Array 1 73338-71466 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGV01000017.1 Clostridium oryzae strain DSM 28571 CLORY_contig000017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 73337 30 100.0 35 .............................. TACGGTTTGGTATAACTCTACTGGAGATAGTGGTA 73272 30 100.0 35 .............................. CTTTCTTTTTTACCGAAATCCTCTCTGATATCATT 73207 30 100.0 35 .............................. TAGCTTTTTTCTAGTTTTTGAGTTTCTTCATTATC 73142 30 100.0 35 .............................. ATTCATAAAAATTCATTTATATTTCCCCCTCAATA 73077 30 100.0 35 .............................. TTGTCTTCGATAGGTAGGACTATAACTTCCATAAT 73012 30 100.0 36 .............................. CGAAGTTAGATAAAAAGGACTCCAAAGAGTATACAC 72946 30 100.0 37 .............................. CAGGAAATGAATATGATGAAGTTCTTGACCATGCAAG 72879 30 100.0 37 .............................. CAGGAAATGAATATGATGAAGTTCTTGACCATGCAAG 72812 30 100.0 36 .............................. ACTCCTTCTAACATATCAAGAAGAATTGTTTTGTTG 72746 30 100.0 35 .............................. AAAAGATTATTGAGGGGGAATAACATTGAATAAAG 72681 30 100.0 36 .............................. GTGGTAAAGGAGCTTCAAAGCGAAAAGAACAGATTA 72615 30 100.0 36 .............................. CCGATGAACAAAGCATTGAGTACGATAGAGTTGCAG 72549 30 100.0 36 .............................. TCTTTGAAGATTGAAACACTTTGTTTCCTCCTTACT 72483 30 100.0 36 .............................. CATAAAACTCTGAATCTTTAAAGGATTTATTCTATA 72417 30 100.0 37 .............................. CCGCTGATAACATGCTGTAAGGCTGTAAAAAGTCTAT 72350 30 100.0 36 .............................. ATACTGTAAAAGAGACTATTGTAAACGCCTATGTAG 72284 30 100.0 36 .............................. CAGAATTATCAATAAAAAACTCCTAGAGTTTTCTCC 72218 30 100.0 36 .............................. TATCACCTACGTGAGCGAAATGCAATACTTTTTTAT 72152 30 100.0 36 .............................. AACATAACGGTTAATCCTTCATAGTATGCAGATATA 72086 30 100.0 35 .............................. CAAAGTAGGCTTAAAAATCTTATTGAATACGAGGA 72021 30 100.0 36 .............................. CAAACTTTAAACAGATAAAAGAAACTGAATCGAATT 71955 30 100.0 36 .............................. TCTTTCCAGCCGAAATTATTCTGCAATGTGAACTTA 71889 30 100.0 35 .............................. TCTTTTTGTATATTTCTATTTCCTCTTTAGACTGT 71824 30 100.0 35 .............................. TAGAAAGAAGGTGAAAGCTATGTATAATATACCAG 71759 30 100.0 36 .............................. CTTGTTCCATTAGTCATATCAACGTTTATAAACCTA 71693 30 100.0 35 .............................. TAGCTTCGTCAATATCTCCATCACACTCATATTCA 71628 30 100.0 37 .............................. GTCTCTTGGAGCTGTTGTCTCATATCTTTCATTTCTT 71561 30 100.0 36 .............................. TTGTAACACATTGTTGCGATATCTAAAGATGTAAAG 71495 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 29 30 100.0 36 GTTTATAGAATACCTATAAGGAATTGAAAC # Left flank : GGTATGGAACTACATGCAGGCTAGAGTGGTATTTATTGATAAATTTAAAAGAATTTTAATAGAGGTGTCTTGTTATGTTTGTTATTTTGGTATATGATTTCGGAGAAAAGCGAGTAGGCAGAGCTCTTAAAAAGTGCAGAAAATATTTAACCTGGGTTCAGAATTCAGTATTTGAAGGTGAAATTACAGAAGCAAATATGAAAAAATTAAAAATGGAGCTTTCAGAAATAGTGCATTCCAATGAGGACTCGGTTATAGTCTATACACTTCGAAATACAAGATATTCTAAGAGAGAGGTTATAGGTGTATCTAAGAATGAACAGGATATATTTTTATAGCATGAAACAGCATTTGATTTTTTCGTCGACCCTCAGTAGTGCAAAAAACACTGGAGATCGACGAATTTTATAATGAGGCAAACAGAGGGTTTGCGAGTTTTGTTAACAAAAGAGTTACAAATTGACAAAACAGTAAACCTTGATATAATGGTAGTTGGATGG # Right flank : GCAGGTTAAGCTAACACAAGATGTACTTGTAAACATCAAAGTAGCATAAAAGGGATTTCAGCAAATAAAAAGGAGAAACATTTTCTTAAAAACCTATTGAAAGTAAAATTTAATTGTGGTAACATTTAAATAAATGAAAAGGTTTTAAATGTTTGGTTAAACGTTTATGTTAAATTCATGTAACTTTAAATAAATTAGATAGTAGGAGAACATATGAATATTAAAGAATTGTCGAAGTTGGCTGGCGTTTCTGTAGCTACTGTTTCTTATGTATTAAACGATTCAGGTAACGTAAGTGATGAAACACGCCAAAAGGTACTCAGATTAGCAAAAGAATATAATTATAAACCTAATAGTATTGCTAAGAGTTTGAGAACAAATAAATCAAATACTATAGGTGTCTTGGTGGAAGATATTACAGTTTGGTTTGCACCAGAAATAATAAAAGGAATAAGCAAATATGCAGATAGCAATCAAAAGAATATAATACTTAGTGATCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 89029-91967 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGV01000013.1 Clostridium oryzae strain DSM 28571 CLORY_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 89029 30 100.0 37 .............................. TCCATTGCTACAGCTCTGAACCTATTGAGACTTTCTG 89096 30 100.0 37 .............................. ACTGTATTCAATGACAAATTGGGATTATCGGAGGAGT 89163 30 100.0 35 .............................. CAAACCACGTTTTTTCCTTCTCCGCCAGATTGATA 89228 30 100.0 35 .............................. TACTTGCAGTACTCTGCCAACCTTTCAATATTTTT 89293 30 100.0 37 .............................. CTGGCTTTTGAGCTGGGTGTATCTTTGGGTATTCTGT 89360 30 100.0 37 .............................. AGTATTGGAGCAAAAAAGATTCTGAAAGCAAAGAAAG 89427 30 100.0 35 .............................. AAAAAACATCTGCAACTCTGTCATATTCACTGCTT 89492 30 100.0 35 .............................. TCATCATCCATAAGGATTGCATTGTTAATTATCTT 89557 30 100.0 35 .............................. CTTCCTCCTTGCCATGCTCCTGCACTATCTCGCAA 89622 30 100.0 37 .............................. CTTAAAAAGTTAAAACGAAGATAACCAGAGAAATAGC 89689 30 100.0 35 .............................. ACTTGTGAGCTTCTTTCATAGCCTTACTTGATATT 89754 30 100.0 35 .............................. TCCATTGCTACAGCTCTGAACCTATTGAGACTTTC 89819 30 100.0 37 .............................. CTATCGAGGGCAGTGGAAAAGTAGTCGGATATGCAGC 89886 30 100.0 38 .............................. TCTTCTCTGAGTTCCGACATTAAGTTTACTTCCGTAGG 89954 30 100.0 35 .............................. AATGCTTGCTTATTGGGGAAAGAGAAAGAAGCTTG 90019 30 100.0 35 .............................. CAACCGATTGTATGATATCTTCTATAAGGCTGGTG 90084 30 100.0 36 .............................. CTTTAAAAAGAAATAAAATAAGTGCTAATGAGATTG 90150 30 100.0 37 .............................. CGAAAACAATCTTATTTGCCCTTATTGTGGATATGAA 90217 30 100.0 37 .............................. AAATACCATCAGACACATTGAAATTCTTAGGTACATC 90284 30 100.0 36 .............................. TCACATTTGCTGTCTATAGCTGGTGCTTTGATTTTG 90350 30 100.0 37 .............................. TATTTACAACGCTCTGCCAATCTCTCGATATTTAATG 90417 30 100.0 35 .............................. TATAATAGTGCTCAGTCCAATAGTTCTTTTTAGAT 90482 30 100.0 36 .............................. GCGAATACTATAAAGTCACATATGTTCGTTGCTGTA 90548 30 100.0 35 .............................. TACAATGGCTATACGGATAAAGAAGCTTTGTTTGG 90613 30 100.0 35 .............................. AAAACCACGTTTTTTCCTTCTCCGCCAGATTGATA 90678 30 100.0 37 .............................. ATGAAATGGAAGCAGTCTACTACGCTAAGAACAAAAT 90745 30 100.0 37 .............................. TACAGCATTTCGTTTATATAGATGAAAAAGGGTTCTC 90812 30 100.0 37 .............................. CAAGCTGTGCAAGAGTATTTCAGAGAACGAGGTGAGA 90879 30 100.0 36 .............................. CTGATATTAATACGCAAATGGCAGATATTACGACCA 90945 30 100.0 38 .............................. TATCTTTAACGTATTTATTCATGCTATCACTTCCTCTA 91013 30 100.0 36 .............................. CAAGTGCAATACGATCATTCGGTTTGAAAGCCTCCG 91079 30 100.0 37 .............................. TTGCATTAGGAAGGAGACGAGTTATGAATTGGTGTTA 91146 30 100.0 36 .............................. CAAACTACGGTATAGAACGTACAAGTGATATTGATA 91212 30 100.0 36 .............................. TAAAAAAGCCTGCAACGCAATATAGGTGTGCTTTAG 91278 30 100.0 37 .............................. AAGAACTTCATGAGTTAGGGCGTACCGATAGATGGAT 91345 30 100.0 36 .............................. ATTCAATAATAATCATATAAATACTCAATTAAACTA 91411 30 100.0 37 .............................. TCAAATACATATGATTCTAACAAATCTCTATATTTTG 91478 30 100.0 36 .............................. TTAGCCATTGTACCGGTTATTTTTTTCTTTTTTTCT 91544 30 100.0 36 .............................. CTATATAAATCATATACATTATCGCATATAAAGTAT 91610 30 100.0 36 .............................. GAGTCTAGCAGAGAAGAGTTCCAGTGTTCCGTTGTA 91676 30 100.0 35 .............................. TCCTTTTCATAATCCTAACGCCTTTCTAAGTTCTG 91741 30 100.0 35 .............................. TCAGAACATCATCATTATATTTTGTTGCCATATCA 91806 30 100.0 35 .............................. CTAGTCAACATTCTTTCTATGAAATCTATGGTTTT 91871 30 96.7 37 .................G............ TCGACTCTTGTAAATTGGATATATTACCGAGCTGTGT 91938 30 90.0 0 .................G........C.T. | ========== ====== ====== ====== ============================== ====================================== ================== 45 30 99.7 36 GTTTATAGAATACCTATAAGGAATTGAAAC # Left flank : TTAAAAGCGAAAAAGCTGTTAAAGCTTATGTAGAAAAAGAAACTCATCTTGACAGTTATTTTACTAAAGAGCTTAAGAATAAAATTTTGCAGGACATGATTGTTTTGTATAAAGGTAATTACTATCTAGGCGTTGGCGATCCTGAAATTGGTATCGTGGATTTAAGTAAAGCAACAGTAAAAAGCAAAAGTTATGTTAATAAATCTGTGAAAGTTACACTGGAAGGAGAAGAAGCTGGAGGAGCTAGGACCACTAGCAAGCTTATTCTTATCCATACTAATGGTAAATGGCTTATCAGTCAATGGAAGGAGATTTCCTAGGGGATAGCCTGAAAACTGAAAAATTAAGAATTTATTTTTTTCGTCGACCTCCAGTAGTGTAAAAACACCGGGAGGTCGACGAAATTAATAATGGGACAGATAGAGGGCTTGCAGGTTTTGTTAACACAACAGTAACAAATTGACAAAATAATAAGCCCTGATATAATGGGAGTTGGAAGG # Right flank : CAAAAAATTGATGTCTATTTTTATAAAAAATTTGATATAATAAAAATAAGAAATGCTTAGTGCTGGTAACACTAAGTATAACCTAGAATGTTTTTTTAGGGTTATAGAAAAATGTACTTAATCTTTGCTGGATGTGGTGCTTTTTTCTTTGCTTGAAACTTCTATATCAAGTCCTAACAGCTTTACACTAATTTTTAAATGATCTATAAATAGATTGTGAGTTAAGACTAACCTAACAATATATATGATTGCTATGTATTTTAATAACTTTACAAATAGTATAATCAATACAATACCACCTTCTTAGCTATGATGGACTTCACTAATAGCACAGAAGGTAAAAGTCCTAAATGGACTTTTACGGGCAACTTGCGAGTGAGAGCGAGCATGGTTAAGGTGCCCAGTGGCGAAGACAAAACGTTCAAAACCTCCACAGCCATCCTTCTGTGGATATTAAATATTTTACATGAATATGTTATCATGATTATAGATGAATACGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 103920-104345 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGV01000013.1 Clostridium oryzae strain DSM 28571 CLORY_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 103920 30 100.0 36 .............................. ATCTTGTTGAGTAAGTTTCCTGCTGTGTCTCCATCC 103986 30 100.0 35 .............................. CTTCCTTTCTTTATCTTATGTACTTATTATAACAT 104051 30 100.0 36 .............................. AAGAAACTGGTACTAAGGATATATACATTGAATTGG 104117 30 100.0 35 .............................. ATTCATCTCTGCTTAATTTTTTAACTTCTGTTATG 104182 30 100.0 37 .............................. TCAAACTCATTATCCTTACTTATCTCATACATTTTAA 104249 30 100.0 37 .............................. ATGCATTTGAAAAATACCGTAGTTGATAATAAAATTG 104316 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 GTTTATAGAATACCTATAAGGAATTGAAAC # Left flank : ATTTTTGTTACTAACAATTATCATGTCTTTAGGGCAAGTATTCTTGCTAGAAAGGTCAAAATTAAGAGGACAAAAGGCATTGGGTCAAAGACAGCCTTTTATTATGTTCCCAGTGCTTTTATAAGGGAGTTTATAGGAGTAATTGCTATAAGAAAATGGCGGTATATTTCAATAGTTGCGATAATAGCTGGAATATATATTTTTTCGCTGGTTATGTTTTATTTATCACGAAGGTAGTAAAGGTTACGGTAAAATGACCATGTTGGAGATAAAATGGAAGCAGAAACTTTGAATGAAAAAACAAGCTTGAGCGTTGAATTTATAAGAGGGTTGAAAAGCGAATAAGGACATTATAATCTTTCGTCGACCTCCAGTAGTGCAAAGACACCGGGAGGTCAACGAAATTTATAATGAGCCAGCTAGAGGACTTGCAGGTTTTGTTAACACAAGGGTAACAAATTGACAAAATAGCAAGCCCTGATATAATGGGAGTTGGAAGG # Right flank : CTATATATTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //