Array 1 67-5416 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017006.1 Sulfolobus sp. A20 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 67 24 100.0 37 ........................ TTAGGAGCCACTGTTCCAGAACCACCTGAGCCAGAGG 128 24 100.0 35 ........................ TCACAATAAAACACATTTTCCTTACCAGCTACAGT 187 24 100.0 35 ........................ GTTATAATAGTTGTTACATCCAAAAAATGAATAAA 246 24 100.0 38 ........................ GGAGGAAGTGCTAAGCTGTTGAAGTTCTGGGTCTTCAT 308 24 100.0 36 ........................ TTAGTAAAAAATTCTACATTTGATGTAAACATTTTA 368 24 100.0 31 ........................ TGCGTAAGATTTCCACCAACTTCATTACCAC 423 24 100.0 34 ........................ TTATGTCTTCAACTCCCCTTATTATAGGAGAAAG 481 24 100.0 38 ........................ TGCAGACGTCTGTAGTTTTACAGTATAATAATATAGAA 543 24 100.0 36 ........................ TTGAACAGTAAGCCTTATCAAACGGCATATCCAGAT 603 24 100.0 36 ........................ CTGTAGTTGTTTCCCGTATTGGTAAATAGGAGAAAG 663 24 100.0 35 ........................ TCAAACTTCTCGGTGAAGAGGACATGGAATGCAGG 722 24 100.0 34 ........................ GTGCCGGTAGTGCCGGTGCCGGTGGTAGTGGTGG 780 24 100.0 40 ........................ TTTCCACCATTAAGCGTATATGATGTGCCGTTAAGCGTTA 844 24 100.0 33 ........................ CCGAAGTGTAGACAGTCTGAGTAAGATTTCCAC 901 24 100.0 36 ........................ CCCTGAGTTCAGTTTGAGTCTGGTTTGGTAAGGTAG 961 24 100.0 36 ........................ ATATGGCTATTTTTAGAGCTACAATTTCAACTGTTT 1021 24 100.0 34 ........................ ATTTTCGAAATGCCTTAAGCCCTAACTCGATTTC 1079 24 100.0 36 ........................ AGAAATTTTAATGTGGGGGGGTGTATTTACCGCGAG 1139 24 100.0 36 ........................ GAAAATCCCGAGAATTTTGATCCGCTTTTAGACTTT 1199 24 100.0 34 ........................ TACAGGCTAGCATGCCCAATCATCTACCTTCAGG 1257 24 100.0 35 ........................ TAGCTCCAATTTGGTAATTCTACAGACCAGTTGAA 1316 24 100.0 34 ........................ AGAGATCGACAAAGACATTAGGGAACCTAATGAA 1374 24 100.0 34 ........................ ATAAAAATTTCCACAAGAGAAAGCTGAAAAAAGA 1432 24 100.0 39 ........................ AATAACTCTGGTACTGGTATCAGTAATTCTAATCCATAT 1495 24 100.0 36 ........................ TTACATGGTATTGGGTAGGTACAGTTTGGGACAGAG 1555 24 100.0 36 ........................ AATCTTGTTTCCATTAACGCGAGAGCTTCCTCTTTT 1615 24 100.0 35 ........................ TGTACATAGAGAGATGGGGCGATTTTGTTAGAAGC 1674 24 100.0 38 ........................ CTAGTAACCTTCTGGTATTCATATAATAATGGAATATC 1736 24 100.0 35 ........................ TATCTACAAATCGTGTTGTTTAACGATCTCAAAAG 1795 24 100.0 35 ........................ AATCCAAATGATATTATTCAGATGAAATTAATTGT 1854 24 100.0 35 ........................ ATAAACGTAATTGAATGGGACGGCGTATCGGACAT 1913 24 100.0 38 ........................ GCATCAGAAAGGACTTCTGGTTTAGTGGGATATTATGT 1975 24 100.0 35 ........................ CCGACACTGTATCGCTCTCCGTGGACTGACCCACA 2034 24 100.0 35 ........................ GTTAACCCGTTAGATACTAGTGGAAACATTAAGGT 2093 24 100.0 33 ........................ TGGTCGCTACCCGCATAGACCTTCCAGGCAGCC 2150 24 100.0 34 ........................ ATGAAAGATGTTACCATGTGGGATAATCATACCT 2208 24 100.0 36 ........................ ATCTCTAGTTTCCAAAGTAATAAAGGGGTTATCAGA 2268 24 100.0 36 ........................ ATGAGAGATGGAAGATTGATGATAATTCCAATAAAA 2328 24 100.0 37 ........................ AATACTCATATGATTAAGATAACCGGGGTGGTATATA 2389 24 100.0 36 ........................ TCCATCCCCTAAATTCTGCGTTTTGTTTCTTTACTT 2449 24 100.0 37 ........................ AAAATGAATCTATCAATAATATATGGTTTTCTCCAAT 2510 24 100.0 36 ........................ TCGCCAAGCATCGATGGTTACGTCGTATTTTACAAG 2570 24 100.0 36 ........................ AATTAGTGCGGTAGATTTAAGGGTTAACGTATTGCA 2630 24 100.0 34 ........................ AACACAACCACATTGAACTATAACTATACAAAAC 2688 24 100.0 36 ........................ TCTTTTTCATTATTTTTGCTCTGGTATAGACGTCTT 2748 24 100.0 36 ........................ TAAGACTTATCACGCCAGTAACAAATATCCGCTTAT 2808 24 100.0 33 ........................ CCTTATTTACCCAGTAAACATAGAGTCCACTAA 2865 24 100.0 35 ........................ GAGTATCTAAGGGGGGTCAAGATAGGATATATTAA 2924 24 100.0 33 ........................ TCACGATGAGAACCGAGGGAAAAAAGGCATATT 2981 24 100.0 34 ........................ TATTTCTGAAATCACTGGCAACTACATCAGCGAA 3039 24 100.0 42 ........................ TTTATGTTTTTGAACCTCCGGATCATCAAAATCGATAATCTT 3105 24 100.0 35 ........................ GCCATTGAGTCAAGTTAGAGACATAGTTGCTACAA 3164 24 100.0 35 ........................ ATGTGAAAAAAGGGAGACAGCGAAAAAGATAATAG 3223 24 100.0 42 ........................ TGGCTTAGGGACTTAATATATCCATGTGGTTCCGTTCCAAAT 3289 24 100.0 37 ........................ CTCTCATCTCAGCAAATAATGCCACTTTCAACAGGGT 3350 24 100.0 34 ........................ CTAACACCCCCACCACCAAAAAACCCCGGTAAGG 3408 24 100.0 40 ........................ ATCGAGAGGAATAAGCGGATATTTGTTACTGGCGTGATAT 3472 24 100.0 33 ........................ TCCATGGGTTGTCCTAGCATTTCGTAATCCTCA 3529 24 100.0 36 ........................ ACACTACACAATAGATATCGCTGATCGTGAAATGCT 3589 24 100.0 33 ........................ TAGTTGCTGCTCTAATTTCTTAAGCCTTAGTTT 3646 24 100.0 36 ........................ TTCTGGATCGCTTGGACTGCTGTGGTAGTAGTCTGT 3706 24 100.0 36 ........................ ATTGCTTGCCAGATCGTTGAGCAAAGGTGATGATGT 3766 24 100.0 36 ........................ TAGCGCATATTCCAGTTGCTTGTAGATTCCTAAATC 3826 24 100.0 38 ........................ GCCAATTCTCTGTTGGTAGCATCTCCTAGTGTAAAGTT 3888 24 100.0 35 ........................ AGTGGAATCCAGGCTACAACCAATATATTAGTGTA 3947 24 100.0 38 ........................ ACTTGGACTGATGCAGTACCCCCAGTAATCGCCTCATA 4009 24 100.0 35 ........................ CTAAATCCAAACATCTCTGAAAGCTTATCGGTAAA 4068 24 100.0 35 ........................ TAAAAACGACACGATGGTAGTGCAAACGGTTGAGA 4127 24 100.0 37 ........................ ATAATGAGGGCTGGCGCTGCGCGGTTTGAACTGAAGG 4188 24 100.0 37 ........................ GCTCCTAGGGACTATTGGAGGGGCATTTATCTTAAGC 4249 24 100.0 34 ........................ GAGGAGGGTAGGTTTGTGGGATGGCGATATCTTA 4307 24 100.0 34 ........................ TTGTTCTCCCCATCTGACACTGTACCTTTCAGAA 4365 24 100.0 34 ........................ CAAAATCCTAATTCTTTTCAAATTCCAGCTGGTA 4423 24 100.0 34 ........................ ACCTTAATATTATTAGTTTGGTAAATGATCTCTT 4481 24 100.0 36 ........................ TGGCTTTTCCAATACCCCCACAACAACAATATCATC 4541 24 100.0 38 ........................ ACGAGTATGTCTGCATAAAAACAAAACAAAGGTATTTT 4603 24 100.0 36 ........................ ATTACTCACAATTGGTGTAGTTATAATTATCCTATT 4663 24 100.0 36 ........................ TGTTTTAATTTAGGATTTATTGGTGAATATGCAATT 4723 24 100.0 35 ........................ TTTCAACGTATTTGTATCCAAAATCTTGTTGACGA 4782 24 100.0 36 ........................ ATGAAAATGAGATACGCCGTCTTAGATCAAAACAAT 4842 24 100.0 35 ........................ ATTAGCCGTAAAGCATTTACAAGGACAAACACAAT 4901 24 100.0 37 ........................ TGGTAACCCAACTTATGAAATTGCCCCCATACCAATT 4962 24 100.0 43 ........................ GCAAGCTGCCGGAGTACCAGGTTGTCTCCAGGCTAGGCTTGTA 5029 24 100.0 44 ........................ GTGGTTACAGCAGCTTTCCCAGTGTTATCTTGTACCAATATATT 5097 24 100.0 35 ........................ ATTTCAGGGTTCTCTCCTAGCTCGATCCACGCTTT 5156 24 100.0 35 ........................ ATAGCAGAAGGTGGTATGTTAAACATAGTAGCAGC 5215 24 100.0 36 ........................ TACTTGCCGTTAAGCCTGAAAACACTGCCATTGATT 5275 24 100.0 35 ........................ TTTGACGCTCCTGCAGGACTTCGATTCGAGATAGT 5334 24 100.0 35 ........................ ACATAAATCTGGGGGGCTACTGATTTTCATGGCTT 5393 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 90 24 100.0 36 GTACTAACGACAAGAAACTAAAAC # Left flank : GTAAATGCTAAAATACTAACGAAACTAAAACCCGGAGTTCTCGCGGTAAAGAGTCCTCCCACATTAG # Right flank : CTTGTAGGGAACAAGATGTTGAGTTTGCCGAAGAGATTGTACTAACGACGAGTGTGTGGACAACAATTTCATCCACCCCCCTTAAAATTCAATTTTATTCCAACTTATGTCAATAGATTTCGAGTAAACTGTGTTGAGGAATATTTTTAACCATCTCGTCATTGTGTTTCTTGTTAAGTAAGGTGAGTGCTAGGAAATCAAACCCATTCATCTTCTCGCCCTAATAAAATAACTTAACCCTAAAAATACTTTTCCACAATAAAGAAAATTCAATTTATATCAACTAAATTGTTGTCCACACACACGCTATGAGTAAATCAAGTTAAGTAGATATAGATCTAAAAATAAACTATGGATGTAAGTGTCTTAAATACTGATACTTAATTTACGTTGCCATTACATAAGTAGTTGCTAAAGACTAAAAAGGATCCGACCAAAAACTTAAGTGTAACTTATGCATGTTAGACATTCTTGCTTCATGCCTTTTGACTCTAAATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 18272-13881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017006.1 Sulfolobus sp. A20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 18271 25 100.0 42 ......................... TTACGTGGATATGATTTCCCATTTGATCCGCTGGAATGATAT 18204 25 100.0 39 ......................... TTATTGGGACAAAAGAGGAAATTCAACAGTTTATAGAAG 18140 25 100.0 40 ......................... AAAATGTCAGAGAGTTTATAAGTATACGCACTTTGAATAT 18075 25 100.0 40 ......................... ATAATGCAATGAAAGATGTAGCTTCTGTCGTTGGCCCAGC 18010 25 100.0 39 ......................... TTATTATAAAATGGAGGGCAAAGATCTAGATTATATTAG 17946 25 100.0 37 ......................... TCCTTTTTTTATTAAGTGTACACTGGGGAGTAAACAA 17884 25 100.0 40 ......................... AGGGAAGGAGTCACTATATAGTCTGAGGGTTTACCTTGAT 17819 25 100.0 39 ......................... CTATTTTTTATCCCGTGCCAGAGTTCCTGCAGGTTCTTT 17755 25 100.0 38 ......................... AGATTTCGCAAGATTTCGCATAAGATCACAAGAAATCA 17692 25 100.0 39 ......................... GTATAACAGTTTCGGTGTACCTTCTGGCGATGTATCTGG 17628 25 100.0 38 ......................... ACATCTTGAAGTTTAAGGGGTTAATTTTCCATAGGTTT 17565 25 100.0 40 ......................... TTAATCTCTTTATTGCCGAAAAGACCATGTCGTGAGTAAC 17500 25 100.0 37 ......................... TTAAGCCTTTTTGAAAAAATCGAAAAATTAGTTTTTT 17438 25 100.0 39 ......................... TATAAGCTCGCTCCTAGTGATGTTACGTTTCAACGCTAG 17374 25 100.0 37 ......................... TCTAATACGTACTTTTTACCCTTATCCGCACCTTTTA 17312 25 100.0 42 ......................... AGAGCAAATATATCAAACCCTTCCCTAGGTCTTACTCTCAAC 17245 25 100.0 38 ......................... ACTCCATATTTCTCTTTAAACTTCTCAGCTATCCTCTT 17182 25 100.0 41 ......................... AAATGTCCAATAATTTTCCTATTACCAATCACTGACTTTAA 17116 25 100.0 38 ......................... TCATTTGTTTCACCCTTATAATAAGGTAATAATCTTTA 17053 25 100.0 37 ......................... ATTGATTCGATTGCTGGACTCCTTTCCTTATCTCGCA 16991 25 100.0 38 ......................... GAGATTGGAATGATAAAGTATAAGATCAGTGAGATATT 16928 25 100.0 40 ......................... GGTTCACAAAATTTAGGGGGCACATCAAGAGAAAAATAGT 16863 25 100.0 39 ......................... CTAAAATCTAGGGGCTCATAACGAATAATATTCATCACA 16799 25 100.0 38 ......................... ACGTAAACGTTGAGCTCATCTTTAACTACTAGCCTTTT 16736 25 100.0 36 ......................... GCCCATCCTCTGGGATCCTTAATGTTAATAGGGATG 16675 25 100.0 39 ......................... CAACACATTAGAAGACTATGAAGTGTTAGAAGAGAATAT 16611 25 100.0 37 ......................... TCATGACAGTCACAGCCAAGCTCATAGCTCTCTTTGT 16549 25 100.0 41 ......................... GTATAATTTTGTAAAAACATAGGTCTAAAAAATAGTGATTT 16483 25 100.0 42 ......................... ATCTCTGACATTAAGTTTGTAGACCAACACATTTTGTTTACT 16416 25 100.0 36 ......................... GTCTTTTAGTTAACTTGTGACCTGTGAACTCTGCAA 16355 25 100.0 39 ......................... TTGTTAAAGGTTCTTGGCTAAGCGCTATTAGTATGTCCG 16291 25 100.0 37 ......................... TATCTCAACAGTTTCACCATCTCTCATTAGCCACCCT 16229 25 100.0 39 ......................... AAAGAAATTATGAAAACGTATATTAATAAACCTTTTATA 16165 25 100.0 38 ......................... TATCGTTCTTGACTACGGTGCAGACCCAGCATCCAAAC 16102 25 100.0 40 ......................... TAAACTATTTTCAGTTTATTAACATCTGCGTATAAAAAAA 16037 25 100.0 41 ......................... TAAAAAGAATTCATAGCTGTTACTGGGTCTGCTCTCATCAA 15971 25 100.0 41 ......................... AGGATTTTTTGTTTAATTTGGGTTTGTGTGGTTTGAGACTG 15905 25 100.0 42 ......................... AATAGAAATCTTTTGTATAAAAAGTTTATATCATATTTTTTT 15838 25 100.0 40 ......................... ATTTCTTCTAAAATCTTTATACTATAGAAATTGATTTTTT 15773 25 100.0 39 ......................... ACATAAGCAACATTGTGACTCTGTGCCCCATTCGGTATG 15709 25 100.0 41 ......................... AACTGTGTGCTCTGCTGAACTAGAGCAAATGTTTGTTTACT 15643 25 100.0 38 ......................... TATCGTTCTTGACTACGGTGCAGACCCAGCATCCAAAC 15580 25 100.0 40 ......................... TAAACTATTTTCAGTTTATTAACATCTGCGTATAAAAAAA 15515 25 100.0 41 ......................... TAAAAAGAATTCATAGCTGTTACTGGGTCTGCTCTCATCAA 15449 25 100.0 40 ......................... AGGATTTTTGTTTAATTTGGGTTTGTGTGGTTTGAGACTG 15384 25 100.0 42 ......................... AATAGAAATCTTTTGTATAAAAAGTTTATATCATATTTTTTT 15317 25 100.0 40 ......................... ATTTCTTCTAAAATCTTTATACTATAGAAATTGATTTTTT 15252 25 100.0 39 ......................... ACATAAGCAACATTGTGACTCTGTGCCCCATTCGGTATG 15188 25 100.0 41 ......................... AACTGTGTGCTCTGCTGAACTAGAGCAAATGTTTGTTTACT 15122 25 100.0 38 ......................... GTTTACAAAATTGTATGGCAATCATACAGCTTATATGA 15059 25 100.0 38 ......................... TCAATTTTAACATTGGTAATCAGTGACATATAATAGAC 14996 25 100.0 40 ......................... TATGTACTTGTATTTTTGCTAAAGCATAATATTGTGGCTT 14931 25 100.0 40 ......................... TGCTTATCCTCATTTTCCCACTTTAGTAATCCCAGTTCAC 14866 25 100.0 38 ......................... CCTAGGAACGATAGACCGTAAATTACATCAAAGATCCC 14803 25 100.0 38 ......................... TCTCTCTTTCCGTAAACTTAGTAACGCTAGGTGGATCT 14740 25 100.0 38 ......................... TTATAGTTTGATTTAGGTAAAGGAATGTCTCACCACCT 14677 25 100.0 39 ......................... GTCCCCCATGCCCTATGTATGTATTCCTTATACGGTTCC 14613 25 100.0 39 ......................... ATGCCATCAGTTACGAGGATCAGTGTCCTTATCTTCCTC 14549 25 100.0 40 ......................... CTAAATTGTTCCAACCCATGCTATTCCTGTGTCTGCTCAA 14484 25 96.0 40 ....T.................... TCACTTTGTTATTTGTTGTACAAATTGGCTAAGAACACGA 14419 25 96.0 40 ....T.................... AATTCCTGGATTTGGGGATCGATTTGTGCTTCACACATTT 14354 25 100.0 41 ......................... TCAAATTTTATACTTTTACCTTCTTTTACCAAAAAAACTCT 14288 25 96.0 42 ....................A.... TTAGATTTATAATTTTATTCCCTATTTCCGCAGTACTTTTTC 14221 25 92.0 35 .........CA.............. GTAGCTTACTATGTTGAAGGAGTTGGAGAATTAAA 14161 25 92.0 37 .........CA.............. CCAGTAGGCAGTTGAACATATGCTGTTATTGCGTAAA 14099 25 96.0 39 ..........A.............. CCGAAGAGGTCAAGTCCGAATGTGGACTCAAGTAGAAGA 14035 25 92.0 40 .........CA.............. CTTATTAGCTTATAGATATCGTCTACTGTTAAGTTGTCAA 13970 24 92.0 40 .........C...-........... ACAAAACTTGATACATTGAAGTAAACTGGGAATATACTAC A [13961] 13905 25 76.0 0 .....G...CAC.A.......G... | ========== ====== ====== ====== ========================= ========================================== ================== 69 25 99.0 39 GATGCATCCTTAACGGGATTGAAAG # Left flank : TAGTATATATAAAAGGGGGAAAATATAGATTTATTTAGATATAAGAAGAATAGATTTTATATCCTAATAAAACCTTTTTATTCTAACGTCAATCCAATTTTTACGTTACAACGCGCTTATTTAAGCCTCTTTATAAACATAACTATAACGTAGTCTTAAAAATCGTTTTATATATTCTATCATTTTCAATAAATCTTTAAACGTCTTATTACGATGTAACAACCCTAATGTACGTTAATTCAAACAGTATTTATCCGTCTTCATTAAGTGGTTTAAAAGTGTGAAAGTATGAGTCTCAATGCGAGAGTTGCGATAATCATTTGGTGAATTAAACGTTTATAAATTAACCCAAACTTTCAAATAAATTAAAAGTCCATGCGAGGGAAAAACGTTAAAGACTATTACTAGGAAAAACCCTCGCATGATAGGGGAAGGTGAGTAAAGTAAAATTTATTATAGGGGAAGGAGAAGATAAGGCATAGGGGTTAATAAACAAATCA # Right flank : ATATAACACTTCCCCATAAAAAATGGTTCTCTGATTCTCTCGATACACGAGAAATATAAAGATGAATCGATGAAGTAAACTATCTAAGGGGAAAAGGACAGTTAACATGACTGACAATCAGATAAGGAATAGAGTTGTGAAGAAGAGACAGTTGAGTGTGCACTCTTTGGTGGGGGGAGACTCTTCAAGTTTTTAGCCGGTTTAAAGATGTATTATAAAAAGGAGAAAGAGGTTTAATTCTCTAATTGTCTCAGTTCCGTAAACCTAGTTTATTAGTTGAATGGTTGTAGTAAGAGGAGACAATGAATAACTAGTATTTTGTGGTGAGGTTTGAGTTTGTATAAGCCGTCATAATACGAAGTAATTTATTGTTTTGGGAATCTAATAGTTAAGTTACGAAAAAGCTAATAAGTTAACAATTATTACGTATGTGGTCAAGTTAGGGGGGCCGTATACAGATTAAGGGCTTAGGGTACGTACCTTAGAGTAATAATTGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCATCCTTAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 2634606-2639557 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017006.1 Sulfolobus sp. A20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 2634606 25 100.0 40 ......................... TAGCCCACGCGAAAAATATCATATCGATAAAATCTCCCAA 2634671 25 100.0 42 ......................... AAATAATAGTTTTCAAAATTCTGTGGCGTCCACAAGTCCACA 2634738 25 100.0 39 ......................... ATTTCTTTCATGTATGAAATACACTGTGGGTCATTGATT 2634802 25 100.0 40 ......................... AAATTTACATTATTTTGTAATCTATTACAGACACAAAAAT 2634867 25 100.0 42 ......................... ACCCATTAAGCCAATACGGATATAATAGTAACATAGGGTTGT 2634934 25 100.0 42 ......................... GAAGTTTTTATTTGATTATATATATCTTTCCAGCTCGTCATG 2635001 25 100.0 40 ......................... AAATTTCCCGATAAACTCATCATACCTAAATAGTAAAAAC 2635066 25 100.0 39 ......................... CTCACTATATAAAAATAATTTTAGCAAAAGATTTTCTGA 2635130 25 100.0 36 ......................... TTTAGAAATTGCATTCCTATCACCATTGTTGTAATG 2635191 25 100.0 37 ......................... TATTTTTTGGTATTGGCAGTTATCGTTAGAAAGTAAG 2635253 25 100.0 42 ......................... GGTTCAACAGTCTACCCAGTTTGAATCTTTAGCCTACACAAC 2635320 25 100.0 40 ......................... TTGATGAAATTGTATATTAGTAAATACAAACTCTGTCCCA 2635385 25 100.0 39 ......................... TACGCTTTTTCGATCTCGTTCTTTATTTCGTCCAAACTT 2635449 25 100.0 40 ......................... TTTGGATATGATTTCGCCGAAACCCATAACTTGTTTAACT 2635514 25 100.0 39 ......................... CTCACCTTGTAATACATACACTTCTTGAAGTCAGTAAAA 2635578 25 100.0 41 ......................... TTATCGATTTGTTAATCGGCTTAATGGTCGCAGGTCTCGTA 2635644 25 100.0 41 ......................... TGTTTGTTGAAAATCTTTACAGCAATTTCAAAGTAAGACTC 2635710 25 100.0 39 ......................... CTTTTCACTAAAATTTTTTAGTTTATAAATGTCTTTACG 2635774 25 100.0 39 ......................... TCTTTCACGATAAAAGTCTACAATAGAATTGCTGGAAAT 2635838 25 100.0 39 ......................... AACCCACCTATTACTATAGGGGTTTTATCTGGTTTACTC 2635902 25 100.0 41 ......................... AAATAATAACAGTATTATTCCCATAACCATGCCTGCTCCGA 2635968 25 100.0 40 ......................... AAATCAGCTACAATCCAGAAATGTATTCCAATTTTTTACG 2636033 25 100.0 39 ......................... TCGGGTACCCAGATCTCACGGTTTTTTATCTTGAGGCAT 2636097 25 100.0 40 ......................... ATAAAGATATTTAGAAAAAGGGAAATAGAAGAAATAGAAA 2636162 25 100.0 40 ......................... CTATTAAATTTGTAAACCTTTACTGGATTACTGTGCGAAG 2636227 25 100.0 40 ......................... CAGTTCATAGTTTCTAAGATTTTCTTTTTGTAATCTCTTA 2636292 25 100.0 38 ......................... GCTGGTATTAGCCTTAAGTCACTATTAATTACATTCAA 2636355 25 100.0 40 ......................... ATATGTAGCCTTTCCAATAGCTCGTCTATGTCGCCCTCAG 2636420 25 100.0 41 ......................... ATATCAAAAACCCTTAAGTCTGTTTCACTATCCTTTATAAC 2636486 25 96.0 39 .................G....... ACCGTTTCCAGTATTTCTGAGATAATATCGCCCTTCATT 2636550 25 100.0 40 ......................... TAAATTCACCGAGTTATTGCATCTTTCGCGTCTGGGCTTT 2636615 25 100.0 40 ......................... TCTTCAGCCTTTGCAATAATAAGCATATTTTGGTCTTCGT 2636680 25 100.0 39 ......................... TTACCGTTCCTCAAGTGCCACAAGTAGTACACTGCATCA 2636744 25 100.0 39 ......................... GTCCTACTTTGGTTATATTGTTTTTATGCATATACCTAT 2636808 25 100.0 37 ......................... ATAAGAAATACAAAGACTACACGCCGGACTTCTACGA 2636870 25 100.0 39 ......................... ATTGGAAATTTTTCTCTTATCGGTTTTGGTATCGTCATT 2636934 25 100.0 40 ......................... TAATCTCCTGCTATCGCCCTATTCATTGTAACGGTATCGC 2636999 25 100.0 39 ......................... GGTAAATAGTCGTAGCGAGTCGTTTTCTCGTAAGTAAAT 2637063 25 100.0 40 ......................... AATTACTTCAGCTATATCTTCAGCTACGTTAAAAATACTA 2637128 25 100.0 41 ......................... TCAATTTTCCAAACTTTGAATTTTGCAAACCGCAAAGTCTT 2637194 25 100.0 40 ......................... TAAGTGTTCAATAAGGGAGTACTGAAATTAGAACTGGAGT 2637259 25 100.0 40 ......................... ATTTTGTCACTTTGCACATTTAGATTAAAGTTGTCGAACA 2637324 25 100.0 42 ......................... TAACGGTTAGCGAGATACAGTAGATTATTAATCTCATTCTCG 2637391 25 100.0 44 ......................... ACGTAACTTTTCCCCGTTTTTCTCATGAAGTTTACGAGAAACTC 2637460 25 96.0 40 ..T...................... GTTTTAAAATTTTGTTTTGAAAAATTATGTCCCCATATCT 2637525 25 96.0 41 ..T...................... GTTAAGAAATTTACTAAATAATCGCCCACACATGTTTTCGT 2637591 25 96.0 39 ..T...................... GTATTTTATTCGCTACATGTACTTAAAAATTGTATTTTT 2637655 25 96.0 41 ..T...................... AACTTATAGACCTTCACTAGATTACTATGTAATTCACGCCC 2637721 25 96.0 39 ..T...................... TTATCTCCCTCTTTTTCACCCTCAAATTTATCGAACTTT 2637785 25 96.0 38 ..T...................... ATGATTTGTTGAACTATGTCCATAATTTTGTCGTTTAA 2637848 25 96.0 43 ..T...................... ATTTCCAAAAGTTCTGATTTCTCAACATGATAATTTGAGATAA 2637916 25 96.0 41 ..T...................... ATTTTGATTAATGTTAATTCCGCCAGGTGATGGATTATAAA 2637982 25 96.0 39 ..T...................... ATTAATATAAGTATACATATAGTCACCCTGAGCAGAATT 2638046 25 96.0 36 ..T...................... TGAAGATTGAGAAGACCCTGAGGAGCCAGAACTTTG 2638107 25 96.0 40 ..T...................... CGCTAAACGGCAAAACACAAACAGTATTTACAATAACCAA 2638172 25 92.0 39 ..T......G............... GATATTCTTCATGAAACCCTTCTAACTCTGCAACACCTA 2638236 25 92.0 37 ..T...C.................. TATTCGCCGGTTTTGTGATAATAATGTATTGCGAATC 2638298 25 96.0 41 ..T...................... TTATTCCTTCGTTTTCATATCTAACCACAAAGTAATATTGA 2638364 25 96.0 39 ..T...................... ATAATAGCCCTTGACGCGTTACCGTAATGTCTCCACCAA 2638428 25 96.0 40 ..T...................... CTCATTTTACTGGGGAGTAAATTGAATTAAAAGGCAAGAA 2638493 25 96.0 38 ..T...................... TCTCTCTCAAATTGAATGATATGTGTAGCCCCTCTTAG 2638556 25 96.0 40 ..T...................... GTATCATATGTTATCCATAACGTTATTAGTGGTATATAAA 2638621 25 96.0 41 ..T...................... GATACCATTCTTTTATTTCAATGTCCCTCCCTATTTCCTTC 2638687 25 96.0 41 ..T...................... GTATAATTTATTGGTTTTATGTAGGCTGTAGACGCTATACT 2638753 25 96.0 38 ..T...................... GTGAAACAACCGTCTGGAATTTCTAATGAGACGATTTA 2638816 25 96.0 43 ..T...................... ATACAGCACAGCACAGAAAACTACAAACCCCTGGTCCACCTTT 2638884 25 96.0 39 ..T...................... TCAAGACCGCAATAAACTCAGATTTGGAATCAATTGATT 2638948 25 96.0 38 ..T...................... TGAAGATGTTGAAGAGCTAATAGATTTTGTCAAAAAAT 2639011 25 96.0 37 ..T...................... GAATTAATATACATATGCAATATTTTATACTTCATAA 2639073 25 96.0 40 ..T...................... AATCCATTAGCCCGTAGTACGGGTGAATATTGGTCATTAT 2639138 25 96.0 44 ..C...................... TAAAGTGAAATATTAGAAACACTAATTGGAATTAATAGATTTTT 2639207 25 96.0 37 ..C...................... GTTTTGTTGTAAAAGCTTATCTTTATTGAAAATTATG 2639269 25 96.0 41 ..C...................... ACTGTATATAGTACGTTACCCGTAGCTTGTGTTTGAGATAC 2639335 25 96.0 40 ..C...................... ATGTTTTGTAGTTTAAGAAATGGAACCTAGGTACTCTCGG 2639400 25 96.0 40 ..C...................... GTTTCGTATGAATATACTTTGTTATCGATAGGATTTATTA 2639465 25 96.0 43 ..T...................... CTATTCTTGATGACGTCCATAATGAAATTAGTATCGACTTCAT 2639533 25 72.0 0 ..TT.......A....A.C.A...T | ========== ====== ====== ====== ========================= ============================================ ================== 77 25 97.8 40 GAAGCATCCCATAAGGGATTGAAAG # Left flank : TTAACTACTGCAAACCAGTCAAACATGGTAATTTTTATTTGAGGGAAATATAGATTTTATAATGTAATAAAACCTTTTTATTTTAACGTCAATCCAATTTTTACGTTATAACGCGCTTATTTAAGCCCCTTTATAAACATAACTATAACGTTATGTTAAAAATCGTTTTATATATTCTATCATTTTCAATAAATCTTTAAACGCCTTATTACGATATAATAACCTTATAACGCGTAAATTCAAACAGTATTTGTCAGTCTTCATTAAGTGGTTTAAAAGTGTAAAAGTATGAGTCTCAATGCGAGAGTTGCGATAATCATTTGGTGAATTAAACGTTTATAAATTAACCCAAACTTTCAAATAAATTAAAAGTCCATGCGAGAGAAAAACGTTAAAGACTATTACTAGGAAAAACACTCGCATGATAGGGGAAGGTGACTAAAGTAAAATTTATTATAGGGGAAGGAGAAGATAAGGAATATGGGTTAATAAACAAATCA # Right flank : TACATTTAAAGCTAGTAAAAACCCAGTGAAGTTTTTATGGTATATTATAAATAGAAAATCTATTAACTTCTTCAGAAGCTAGTCTCTTCAAAAGTTTCCTCATATATGTCTTTATATATTATTTTTATACTTTCTAAATTCCTCTACGTTTTTTATAGCAATATTTTTCATCCAATAAAGTTTTGTGCAAAATTGTTTCCCTCTGTATTTTATCCGTGCATTGCCCTTCTCTTAACTATTGGTATTTCGTTTTCTTTTACTAATATAACGCCCCATTTTCCTAGTATTTCTATCTCTTCTAATACAATAATCTGAAACTCCCTCTCCTTAAACTTTTCTGCTCGCTTACTGTCTTTAATTGCCAATACTATGATGAAATAGATGTTTAGGAAATAACGCATTTTAAAGGTACAAAATATAAAAAATTTTATTTCACTTTACATTATCTTATTCATTACATCATCTAGGTCCTTTGTTAAACTCCCTTTTACATACTCCTC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCATCCCATAAGGGATTGAAAG # Alternate repeat : GATGCATCCCATAAGGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 4 2652686-2650013 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017006.1 Sulfolobus sp. A20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 2652685 24 100.0 43 ........................ CAGGGAAAAGAGATGAGACATCTGGGTTGAAAGGCTCTATCTG 2652617 24 100.0 38 ........................ GAAAGATATGCTTGGTACTTCTTCCCTACTTGCCTTAT 2652554 24 100.0 42 ........................ ATTACAATATTTCATTTCTTTACCAGATTTTGTAAAATATGC 2652487 24 100.0 38 ........................ ACTTGCCCTGGGTATTTTTTGAAATACGTCTCTATCAA 2652424 24 100.0 37 ........................ CAATTCCTCAAAACTTATTGGTCTTGCTGCCAACATT 2652362 24 100.0 43 ........................ AAAAATAGAACGATATATTAGCCGAGGCGTAGAGAAATGAGTG 2652294 24 100.0 39 ........................ TGAAGAGCCCAGACGCGAAAGACGCAATAATTAGGTGGT 2652230 24 100.0 34 ........................ ATCTCTCTCAGTATCTCGCCCGTTTTTGGTTCAA 2652171 24 100.0 39 ........................ ATTAGCCCGTAGTAGGGGTGGATGTCGGTGACGATTATT 2652107 24 100.0 41 ........................ TGTAGTATACCTTTATTGGCTTTAACTTCACTATCTCGTCT 2652041 24 100.0 44 ........................ ATAGCAGGAACCTCAGCTACACTGATTACCTCAAGTTGTTTCTT 2651972 24 100.0 39 ........................ TTTTTTCCACCTCTAAGTAAAAACTAACACACTCTAGTA 2651908 24 100.0 36 ........................ AGAGATGAGAGAGAGAAAATTTAATTTTTGGTTCAA 2651847 24 100.0 39 ........................ TCAATAAGCCTATCGATAATATTCTCAAAACTTCTTAAT 2651783 24 100.0 38 ........................ AGGATTTCTGCAACTCTACCAACAGTAGCTTCAATAGT 2651720 24 100.0 38 ........................ AAATCAAATTGTAAGAGATATAGTCGATGATGTTTTTT 2651657 24 100.0 42 ........................ AGCACACTCCTCGTATTTTTTGTATTTTACTCCCCAGTAAAA 2651590 24 100.0 41 ........................ TTGCAAATTTCTTTATCTGAAATATACTTACAATATATTTC 2651524 24 100.0 41 ........................ AAAGAATATGGCTACTTTGTGCTCCATTAGGTACGCCTAAG 2651458 24 100.0 41 ........................ AATATATTTCCAGCCGTTTGTTAATCTCTTACAATCTTCAA 2651392 24 100.0 40 ........................ CATTTCTCGCTTATTCGCATAAACAATGGGATATCCCATA 2651327 24 100.0 35 ........................ CTGATTCGTTGTTACCGAGATATCTATTTGCGAAT 2651267 24 100.0 41 ........................ TCAAAATGGTAAGGGGAATTGGTCTCATATTTATCGCCATG 2651201 24 100.0 41 ........................ ACTACACCCCCTTCAAATCTAACTTTTGATTTTACACAATT 2651135 24 100.0 38 ........................ ATCCATTAACGGCACAGGGAGGAAAAAACGAGAGAGAA 2651072 24 100.0 40 ........................ TAATCCAATATACATCATCTTTAGACAGAGGTATATCAGT 2651007 24 100.0 40 ........................ TATGTAGTTCAGCACATACATTCCCTCTGTTATTTGCTGC 2650942 24 91.7 40 ...........AC........... CTCGCAAACGCACCAATAATAGCGCCATAGACTACATCGG 2650877 24 100.0 38 ........................ TTCGTAAGTCCTAGCTGTATTCGTATCGCGTCAAGTCT 2650814 24 100.0 40 ........................ AATAGTTTTCAGTATCTAGATTTAGATATAGAGATTCTTG 2650749 24 100.0 41 ........................ AGGATTGAACCAGAACAGCTCTTCTGGTACACAATCAACAT 2650683 24 100.0 40 ........................ TATCCTTCAACTAACGAAAACTTAGCCATTAACATTACAC 2650618 24 100.0 40 ........................ AAAAGGTTATGCAGTTAGAGAAATAACTAAGAAAATAAAA 2650553 24 95.8 40 ............G........... TTCTTTTGTGTGAGTTACCCACTAGATATTATTTCAACCA 2650488 24 100.0 37 ........................ ATATAAGTAGTATGTGGTATAAATTTAATGTTTTCTA 2650426 24 100.0 44 ........................ CAAACCAAATATACCCTGGTGGACTTAAGCTACACTTCCATCCT 2650357 24 100.0 38 ........................ TTTGCAGTTCTTGTAGGTCAATTTAATGGCTCATCGTA 2650294 24 100.0 40 ........................ ACAATATCACTATCTGTCACATAAACTAGTAAGCCGTGGC 2650229 24 100.0 38 ........................ TGGGGTACCAAATGTATTCTAGCTCTACACTATTATCG 2650166 24 91.7 39 ...........AC........... ATATGTCCATGGTTGTTGTTTCCACAGTGATATGTTGTG 2650103 24 91.7 41 ..A........A............ ATTATAATAAATTCGTCATTTAGTAAGGCTTTCTTCAACAT C [2650090] 2650037 24 95.8 0 ...........A............ | C [2650024] ========== ====== ====== ====== ======================== ============================================ ================== 42 24 99.2 40 GATGCATCCCATAGGGATTGAAAG # Left flank : TAACTACTGTAAGCCAATCAAATATGGTAATTTTTATTTGAGGGAAATATAGATTTTATAGTGTAATAAAACCTTTTTATTCTAACGTCCTTCTAATTTTTACGTTATGACGCGTATATTTAAGCCTCTTTATAAACATAACTATAACGTTGTCTTAAAAACTGTTTTATATATTCTATCATTTTCGGTGAACTTTTCAACGCCTTGTTGCGATATAACAACCTTATAGTACGTTAATTCAAACAATAATTGTTCGCCTTCATTAAGTGGTTTAAAAGTGTAAAAGTATGAGTCTCAATGCGAGAGTTGCGAGAATCATTTGGTAAATTAAACGTTTATAAATTAACCCAAACTTTCAAATAAATTAAAAGTCCATGCGAGGGAAAAAAGTTAAAGACTATTACTAGGAAAAACCCTCGCATGAAGGGAAAAGGTAATAGAAGTAAAATTTATTATAGGGGAAGGAAAAGATAAGGCATAGGGGTTAATAAATAAACCAG # Right flank : ATTCTTTCATTAGGCGGGGAAGAGGTCAGATGTTAATGCTACGGGATTTAAGCCAGAAGTCCGCATGCATTACGTCGACGTCACTCCTAGTAAGCGCAAGGGTTTTCTACGTCCACCAGAGCTACCCAGAGTCCCAATACAGATTAAGATACAATCAAAACACTGAAAATTAAAGGTGGATATAATGTCTCGTTACATGATGCTAAAGTAGGAGAACAAAATAAATGAGCTTCTAAGTGGGGTTTGTAAACGAGTGACGGCGATCGAGATGAGAATTAGTTTTTGAAGTTGATAGACGAAGTTGACAAAGTTAGTTAAGCAGAATTATCATTAGATGGATGATTTCAAGGACAACTAGGAAGGTTAGCTACTCATACAAATTATATACGCTTTGGACTAACTGACCTCGAGAGAGGTTCAACAAAAAATTCTTAGTGAAACTTACGTTATTAGCTATTGTTACCGGTCTCAGCATAAGTACCTTTCTAAATGAAGTCTTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCATCCCATAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 5 2658195-2662819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017006.1 Sulfolobus sp. A20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 2658195 25 100.0 40 ......................... ATATTCCGGATGAAAAGGCATATGAAAAGTTAAAGGCGAA 2658260 25 100.0 39 ......................... AATCATAAAAAGCATTTGATTTTGGCGCGTTAGCGCTTT 2658324 25 100.0 40 ......................... AACTCAAAATCGCTGTATATCCCTCGCCGGCTCTATGAGG 2658389 25 100.0 38 ......................... CATTACTAGTTTCCTCCATGTTAACGTCCACCACATCT 2658452 25 100.0 38 ......................... TTTTATACAATATTGTTAAGAAACATCACCAATACTTC 2658515 25 100.0 37 ......................... TATTAAACCAACGACTCCTTACGAATAGAGAGATAGA 2658577 25 96.0 43 ........T................ TGTGCTGTGATATTTGTATCAGTAAGCAATTTATCTAACAACG 2658645 25 100.0 35 ......................... GTCAATAGCTCACCCCATATAACAGCTCATAATAT 2658705 25 100.0 42 ......................... GCTTTTGGATATTGCTTTTGGACTTCCTGTAACAGTGAAATC 2658772 25 100.0 40 ......................... AAAATCTTCACCCCTTCCATGAGATGGATATAGAGCAATT 2658837 25 100.0 38 ......................... GGTACAACTGGGTTCATTTCCCCAGTGTCTTCTGGCTC 2658900 25 100.0 41 ......................... AATCTACAGTTTTTATCGCTGTGTGTACAATTATTTCTAAG 2658966 25 100.0 40 ......................... TGAAAAAATTTCACTTTGGAAACCGTCTTGATATATTATT 2659031 25 100.0 40 ......................... TTACTTAATTCGAATGTTCCATAATTCACAAAGACTTTAG 2659096 25 100.0 40 ......................... AAATAAGCATGACCTTTTATCGTGCCAAACATATAATCAT 2659161 25 100.0 42 ......................... AGAATCACTAGGAGAAGGAGTAACTAAAGGAGTAGTAAAAGG 2659228 25 100.0 39 ......................... GACCAACAATCAATGCCAACTTTGGCATATCATAGCCAT 2659292 25 100.0 38 ......................... ACTGTGGCATATGTTAACCTAGCCACAATGACTAAAAC 2659355 25 100.0 41 ......................... AATGACCCTGATAATGGTATATGGAGTTTAGGTTTTTACAT 2659421 25 100.0 40 ......................... TTACTTAATTCGAATGTTCCATAATTCACAAAGACTTTAG 2659486 25 100.0 40 ......................... AAATAAGCATGACCTTTTATCGTGCCAAACATATAATCAT 2659551 25 100.0 40 ......................... AAAAGTAAAACTAATTGGGGGCTAATAATAGGCGTAGTAG 2659616 25 100.0 38 ......................... CTGTTATCGAGATATAATGATATTCTCCCATTCTGTAT 2659679 25 100.0 39 ......................... ATAATGTCTTTATTTGAACTACAGAGGAATGGATGTCTT 2659743 25 100.0 39 ......................... TACAATTTCCAGCACGTCAGACATACCCACTATGTCTAG 2659807 25 100.0 37 ......................... TAATTTTTATAATTTCATCAGCAGTAACACGATAAAA 2659869 25 100.0 39 ......................... ATGTCTCATCGTCGGCAGACAGTGCTCTATTCATCTCAA 2659933 25 100.0 38 ......................... ATCAGTGGCTTCAGTCTTCTCTTATAATTCTCATACCT 2659996 25 100.0 41 ......................... TATGTAAAATTTAGGGAAAATACCTAGAGGTCCAGTAAGAG 2660062 25 100.0 39 ......................... AGTATATGTTCAACAGCTGAGAGACATTAACATTTTGCT 2660126 25 100.0 38 ......................... AATTAATATATCTTCTGCGAGAGTTAGAGCCATTTTTT 2660189 25 100.0 39 ......................... TCCCCATCCCCTTTGCTATCTCTTTTACCTGTGTCGCCG 2660253 25 96.0 40 .............A........... TGATTCGTTAAATCGGGGAATTTAACGCGTTCAAACATTT 2660318 25 96.0 39 .............A........... TTTTCTTCTTCATTAGCAAAGCGTACGCAGCTATACCAA 2660382 25 96.0 37 .............A........... TTTATATCATCATCTTTCCGCATAGTCTCGGCGACCC 2660444 25 96.0 36 .............A........... ATATTAGCCAAAAGCCCCTTAAAGACTGACTTTCTC 2660505 25 96.0 39 .............A........... GCGTTTCCACTGGCATAAGAACCACCTAGCTCTATTGGC 2660569 25 96.0 39 .............A........... GATATATATGTACGACCATCACGAAACAAACCTAAAGTT 2660633 25 96.0 41 .............A........... CACGTTACCAGTGCAATAGCGAGTGACTACAAACGAATACT 2660699 25 96.0 40 .............A........... CGGTTTGACAATTATGAACGTATCGGTTTGCTTAAGCAAT 2660764 25 96.0 43 .............A........... ATAGATGAATATTATAATCCTATAATTCCCCCATTAATCTTTC 2660832 25 96.0 40 .............A........... CATCATGGCAGGGTCTTGACGCTGAGATAACAGCAATAAA 2660897 25 96.0 40 .............A........... AAGATTTCTACTAACTTTTGCATTAACATCTCTCGCTTTT 2660962 25 96.0 40 .............A........... TTGTCAACCTCGAAGTAGTACGGTATGCTTGCTAAAACCT 2661027 25 96.0 40 .............A........... ATTCTCGAAAATTGCAGTTGTGTTAGATGCAAAAATTACG 2661092 25 96.0 42 .............A........... TTACAAAATCTGTAAAGTAGTTTTTCTGTAAAGCTAAACTGT 2661159 25 96.0 41 .............A........... AGTTCTGTCTTGAACGCTGTTCTATTTCTCCATGTCTCTAG 2661225 25 96.0 40 .............A........... ATCGTCAACTACAACATATAACAATTTACAGATTACATTT 2661290 25 96.0 41 .............A........... CTATATCTTGTGTTGTGCTCTTTAAACATGGCTTTGAAAAA 2661356 25 96.0 43 .............A........... TTATGAATGTGGTAGATGCCATCTGGTATTGGCATTAGAACAA 2661424 25 96.0 41 .............A........... TCTTTTAACGCGTTCAAAAATATTTGCCATACCCCTATTTG 2661490 25 96.0 43 .............A........... AAGAAACAAAATTATACATAAGTAATGCCAGCTTACTTTGTGT 2661558 25 96.0 40 .............A........... TAACTAACATAGTAACCATTCTGTGCCCATGGCTCCCACT 2661623 25 96.0 37 .............A........... CCAACCCCAGCTGTTAGGGGGGAAGAGCCAGCAATCG 2661685 25 96.0 39 .............A........... GAATAACACTGTTTATATGATTGATCACCATGAATCAAA 2661749 25 96.0 41 .............A........... ATTGGGATTAGCTAGAACTTGTGCACTTTGAGGGATAACAT 2661815 25 96.0 39 .............A........... ATTCCTTTCTGCATTTTTACGTAATCTGGTTTATCGTAA 2661879 25 96.0 39 .............A........... ACCGTATAAGGCTGATTTTGTGGTTGTGCAGAGATTATT 2661943 25 96.0 42 .............A........... TTGCAGCTACATTTGGATGGCTCAGTGCGAAGAATGATACGT 2662010 25 96.0 40 .............A........... CCTAATTTCTCTGTTGGTCTATTCCAGCCTAGTAGTTCCT 2662075 25 92.0 41 ..........CA............. CTGTGATGTTTCTCATGTTATATATGTCCAGCTTCCATTCT 2662141 25 92.0 36 ..........CA............. TTATTTCCTAAAATTTGGATGTGCCTACTGGTATGA 2662202 25 92.0 40 ..........CA............. AGACATCCCCCTTTCTTTCCCTAACCACTCTGGCTTAAAG 2662267 25 92.0 41 ..........CA............. ATTGCTAACCAGTACTCATCTGTTCCTTTTCTTTTTCCCGC 2662333 25 92.0 41 ..........CA............. CTCTACTATTTGATTTGCGATGTTCATAGCGTCGTTTTCAT 2662399 25 92.0 39 ..........CA............. CGTTTGAATATATTGTTGTAGTATGTCTAACGCCTTTAA 2662463 25 96.0 39 .............A........... CCTAGACTTCCTACTGCCACTAAATATACCGTAACTCCT 2662527 25 96.0 40 ...........A............. ACTACTGATCTCTATAGTGATAAGGGAAGAGATAGGATAT 2662592 24 92.0 44 .........A...-........... GTGAAACTGTTCTGCATTGATGTCACTGCAGTGACAGTCGTATT A [2662601] 2662661 24 96.0 44 .............-........... TTGGACTTATATCCTCTTCAGGGGTTTGGGAAACTTGCGGGTTC A [2662671] 2662730 24 92.0 40 .........A...-........... GTAGAGTTGAGTAATCCCATAGTATGGAAAATACTGTAAC A [2662739] 2662795 25 80.0 0 ....T...T..A.A.A......... | ========== ====== ====== ====== ========================= ============================================ ================== 72 25 97.1 40 GATGCATCCCATACGGGATTGAAAG # Left flank : TAATATAAGAATTTAGGTAATATAATAAATATGATAAGTCGTGACATATATAGATTTTACAGTGTAATAAAACCTTTTTATTTTAACGTCGATCTAATTTTTACATTACAACGCGTATATTTAAGCTTCTTTATAAACATAACTATAACGTAGTCTTAAAAATCGTTTTATATATTCTATCATTTTCGGTGAACTTTTCAACGCCTTGTTGCGATATAACAACCTTATAGTACGTTAATTCAAACAATAATTGTTCGCCTTCATTAAGTGGTTTAAAAGTGTAAAAGTATGAGTCTCAATGCGAGAGTTGCGAGAATCATTTGGTAAATTAAACGTTTATAAATTAACCCAAACTTTCAAATAAATTAAAAGTCCATGCGAGGGAAAAAAGTTAAAGACTATTACTAGGAAAAACCCTCGCATGAAGGGAAAAGGTAATAGAAGTAAAATTTATTATAGGGGAAGGAAAAGATAAGGCATAGGGGTTAATAAACAAACCA # Right flank : GGAGCTGTCTATAGCGCATTTGTGTTCAACTAATCTACGAGAGATGCATCCTAAAAGGATAAAGCACATAAATCCTTTTTACATGGTAGCTGGAGTTAGGTTTAATTCTGTAGCTTCATCTCTTCACAGTTAACCCTTACGTAACCCTTATCTAATGAACTTGGAAAAGTTATATTCTTATTCTGATAAAGTGGGGGAGTCAGAGTAGCTTATCATGAAAATTTTAAAGCAGTCAAAAAAAGTTGGCGAAGAAAAGATAGAAACCATTAATTTATCTTGAATTTTATTATTAATGTACGAAATCAATATATGATACCGTGTTTGCTTTGGTTTTAATAATCCTTCCATTCAATACTCGAAAACTGTTACCCTCAGTCTCCCTTATTAAGTTCTCTAAAATCTTAGATTGCTGGGTTTGAAGGGAGTATATTACCGGTAAGTTTTAAGAAAGTTTTCATCTCATTAATTTTATACGGATTATTATATACACAGTATAGCTC # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCATCCCATACGGGATTGAAAG # Alternate repeat : GATGCATCCCATAAGGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 6 2674016-2666936 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017006.1 Sulfolobus sp. A20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 2674015 24 100.0 36 ........................ TCTTGAGAACCCAGCGTACGAATCGCTGGACACTGT 2673955 24 100.0 34 ........................ GCCACACATCCACTTTATCACTGTCTGGTAGGTT 2673897 24 100.0 36 ........................ TACATGAACGCTATGGGTACACAAATTGTTTCTACA 2673837 24 100.0 37 ........................ AAGTGGAATTTGAGTAATGTAACTAATTGGCTAAGGT 2673776 24 100.0 36 ........................ ATATTATAGTTTTTGACGTGTTAAAGTGGGGAATTG 2673716 24 100.0 35 ........................ CTGTTTTGTCTTAAAGAAGCCTTTAGATACCTCAA 2673657 24 100.0 37 ........................ GCAAATTCAAATTGGACACTGATTTTCCGATTATATG 2673596 24 100.0 36 ........................ AAGATTATTTTTGCTAGCATAAATCTCTAGAAGATA 2673536 24 100.0 37 ........................ CCCTATTTGTCGTGAACTCGACCTCAATCACGTTTTG 2673475 24 100.0 35 ........................ GATTTCCGATGATTAGACAGATTAATCCTAAATAT 2673416 24 100.0 35 ........................ GATTATTCGCAAGCTGGAATATCTCAGTCGCATAT 2673357 24 100.0 36 ........................ TAAAAGATATGGAAGAAATACTAAAGGAGATGAGAA 2673297 24 100.0 36 ........................ ACTGACCTAGTAATTCGTAATCCTCATACTTGAGAT 2673237 24 100.0 36 ........................ TAAAAATCTTAGCCCCTGGAACACCACCAATACCTC 2673177 24 100.0 35 ........................ AAATATCCTTATTATATATACTTGCTCTACGCAAG 2673118 24 100.0 34 ........................ ATAAGGGTCTTGTTCGTGAGTGGTGATTCATAAT 2673060 24 100.0 37 ........................ TAATAGGGTTGTCCCGAGGGACAACGCTATCATAAAA 2672999 24 100.0 34 ........................ AATATCACGCCATTTTTTTCAGACGGATACTTAA 2672941 24 100.0 36 ........................ GGGGGGCTTTGATGGGCACGGGAGTATAAGTTCTAT 2672881 24 100.0 36 ........................ AAAACAAATGATGAGAGAAGAAGGATTTGAAGAATT 2672821 24 100.0 36 ........................ AGAAAGGTCTTAACAGAGAAATACAAAGGAGAAAGA 2672761 24 100.0 37 ........................ ATTTCACACTTCTTTCCGTTTCGCTCTTTCTCATAAT 2672700 24 100.0 33 ........................ TCAGTTAGAGAACACGTTAGAAGCGAGAGGAAT 2672643 24 100.0 37 ........................ AACCAAAGATGGGAAATATCTATATGAATGTGGAAAA 2672582 24 100.0 35 ........................ ATATTAGGGCTATCACTGCAGCGCCACCACCACCT 2672523 24 100.0 37 ........................ ATTGCCAAAAAGCTAAGGCAGGCAGGAGTGCAAGCAT 2672462 24 100.0 37 ........................ AACCTTCAGAATTGGACTATTGCGAGAAAATAACGGC 2672401 24 100.0 35 ........................ AAATCGCTTATTTTAGGACGCATCACAAAGTTAAG 2672342 24 100.0 35 ........................ CAAAGATTTTACCCCTATTATATCTAACCTTAAAC 2672283 24 100.0 37 ........................ ACAAGAAATGATGGGGACATCCCGCCCAAGAGGAAGG 2672222 24 100.0 38 ........................ TAACCACAGCTCCATCTGGTTCTCATTTCAATTCTCCA 2672160 24 100.0 35 ........................ ATTTACCAAATAATCTCATTTGAAAATCCACAAGA 2672101 24 100.0 37 ........................ AGAAGGATTCCACTACCTCCTGTAACTGCTGAGAGAT 2672040 24 100.0 36 ........................ ATCTCTTACTCGAGACCGTGTCAGAGAAATTAAATA 2671980 24 100.0 35 ........................ TATTGTGGGGTCTAGTGAAATCATCAGTACATCAC 2671921 24 100.0 39 ........................ CTGGTACAGCGCCGGGAGCTGGCACAGCAAATACCGGTA 2671858 24 100.0 35 ........................ TGGGCTAGCGCCAGTCAAGATGAGTGTGGATTCCC 2671799 24 100.0 35 ........................ ATTTCTTATGATATAAGAATCCGCTCTTACTCCTA 2671740 24 100.0 35 ........................ ATTTATAATTCCAACCGCGACGGGTACGGGCATTC 2671681 24 100.0 36 ........................ ATCCAGACTGGAGGAGGTAACGCTTTTGGTAACCTA 2671621 24 100.0 35 ........................ AGATAGAAATACATGTTTCCAAACCTAGTAATGTT 2671562 24 100.0 36 ........................ CCAACATCGGAAACACTATTCTCAACGGGCTAAATT 2671502 24 100.0 34 ........................ ATACTTACGTTTTGTGTCGCGGGGAAATTACTTA 2671444 24 100.0 34 ........................ ATTAACGGATTACTATAGCTTACTGTCCATGTCG 2671386 24 100.0 35 ........................ AACGATAAGGATAGATCTTCTGAAGAATGATTTAG 2671327 24 100.0 34 ........................ CTCTGGGTTTCTGTGTGTGTATATATGAGAGAGA 2671269 24 100.0 38 ........................ TCTTCTGTCTTAGGTCTATACGTTTCTATGTCGAAATA 2671207 24 100.0 36 ........................ CTGCACAACCTAAGATGCAAGCCGTGATGAGCAAAT 2671147 24 100.0 38 ........................ GCTGGTAAGCACAGCACAACAACTACAGACTGCAGTCC 2671085 24 100.0 36 ........................ TTGAAGAGTGTCAATCTCGCTTTGCACTTCTGAGAT 2671025 24 100.0 32 ........................ ATCAACTCGGAGGAGGGGGGAGGAGGAGGTAC 2670969 24 100.0 36 ........................ AGAAAAAGGGGTATCTGATATACCTATATAATATAT 2670909 24 100.0 35 ........................ CCATAATCCCTCTGAATTAAGCCCATCTACCCTAT 2670850 24 100.0 37 ........................ CCACAACGGCTTAATCGGAAGCCTGTACCCAAACTTC 2670789 24 100.0 34 ........................ TGTGACCACAAACTGCTCAAGGTTGATTGAACCT 2670731 24 100.0 35 ........................ ACAAATATAATTACAGGATCTCCAACTGGTTACGT 2670672 24 100.0 35 ........................ CTGGTGCCTGTCCTACTATTGGGATTAACCCACTG 2670613 24 100.0 37 ........................ TTGGCTTTTCCGATACCGCCACAACAACAATACCATC 2670552 24 100.0 36 ........................ TCACTTCAATTCTCCAAATGCATTTTATGCAAATTC 2670492 24 100.0 33 ........................ GTGCTAAAGAGGCTCCATAGAAGTTCAGAGTGT 2670435 24 100.0 37 ........................ TTTTGATATCTCTTCAATATGATAATGCGATTTCAAA 2670374 24 100.0 35 ........................ TCGATAAAGTTATTTATAGCATTAAGAGCGTAGTT 2670315 24 100.0 35 ........................ ATTGGAATGAAATACCTAGCCTCAAGTTCTTCCCT 2670256 24 100.0 35 ........................ TTTTTGCCAATTTCTATATCATTTACAATATCATC 2670197 24 100.0 34 ........................ TTACTGGTAAATAGAGACACTTTCTACTATCAAA 2670139 24 100.0 39 ........................ ATCAAGTGTTTTCAGAGTTTGAAAGCGGGTGAGAATAGT 2670076 24 100.0 37 ........................ ACAACCCTGGACTTACAGATACCTTAAAGAAGGAAGA 2670015 24 100.0 35 ........................ TTTATCTCAAGTGGAATGTTGTGACATAATATATC 2669956 24 100.0 34 ........................ AGAATCTCATTCTTTGCAAAATCAAACTTAGTTT 2669898 24 100.0 35 ........................ AGGCTTGAGGAACTCCCAGCTGATTACTATACATG 2669839 24 100.0 36 ........................ TGGTAAAGTCTGTAGCCACATTAACACCCACAAGAG 2669779 24 100.0 36 ........................ TTCAAATCGCTATAAAGTCGTAGAGATGTTGTGTAT 2669719 24 100.0 35 ........................ GTGTAAAGTGCGATATAAGTCGATATTGAAACAAG 2669660 24 100.0 34 ........................ GTGGAGGGGCGGGTGGTAGTGGCGGAAGTTCTCC 2669602 24 100.0 42 ........................ ATTATAATTATCCTATTGTTGATATGGTTCTTATTCTTTAGG 2669536 24 100.0 37 ........................ CCAAATGCCGTAAAGTATCTATCTAGCCTAGTAAGAT 2669475 24 100.0 36 ........................ CTAAAGCATCAAATCCTTTTAATGTAAATGCCCCTA 2669415 24 100.0 38 ........................ TGTAAGACTGCAAGCGTTAGCTGGGGGGAAAACAATGC 2669353 24 100.0 37 ........................ AGAGTTATCTTGAACCTCCGTTCAACCTAGATTTATT 2669292 24 100.0 38 ........................ ATCTGTTTTCTGATTGTTATTGTTTGCATTTTGCTGTA 2669230 24 100.0 37 ........................ TAAATGTCCTTTACCCCCAGTCTTTATTACGATATCT 2669169 24 100.0 37 ........................ ATATCACACAAAGATTTCAAAAATTATACTGTACCCC 2669108 24 100.0 35 ........................ ATTATTACGTTGTTTATCGGGACAATTGATAAATC 2669049 24 100.0 36 ........................ AGAGCTAGGGCTTATCTTCCTCAAATGCCTACAGTC 2668989 24 100.0 37 ........................ AGGTGATTCGATCTCGATTATAACTGCTTCTGAATAT 2668928 24 100.0 38 ........................ ACTTATCTTCTGAGCTAGCCACTTCATTAGGTAGGTTT 2668866 24 100.0 37 ........................ CATAGTCTGGAAAGCTTTTTCGGTAAGTTTCACATAT 2668805 24 100.0 35 ........................ AATATCAACACTGAAAGAGACACTACCTAGCGCAT 2668746 24 100.0 35 ........................ TATCGGATTTTCAGTACTCTGTCCGCATATGGTAA 2668687 24 100.0 36 ........................ GGTTATCCTGTATCTCGCTGTGTCCTCGTCATACGA 2668627 24 100.0 34 ........................ AAGCTGATCTATCGCCTCGTTGTACGCATCTATA 2668569 24 100.0 36 ........................ GAGTAATTGTACGCTACGAAGACCCTGGCGAGCCCT 2668509 24 100.0 34 ........................ AGATGAAGGCTAATGGTATAGAGATATCCTATAA 2668451 24 100.0 34 ........................ TTTACAACAATTACCTGGTATATACAGCGAAATC 2668393 24 100.0 37 ........................ CAAACGTTGCAGAGGAACATTAATAACTTACAGCAGG 2668332 24 100.0 39 ........................ GTTTGCGCCATCTGTTGTACAGCGTTACTGAATGTATAA 2668269 24 95.8 35 .......T................ ATTGTATCCCTGCGCTACGTATTGTAGAATTTGTT 2668210 24 100.0 36 ........................ AACACTACATTACAGCCTTTCCCATTAAACCAAAAC 2668150 24 100.0 40 ........................ TTAATAAAGCTGTGCAGGTAATGTCAGACAGTGCAGAAGT 2668086 24 100.0 34 ........................ ATGGCAGATCGTGAATAAACTTGAAGAGATAATA 2668028 24 100.0 34 ........................ TGCTAAAAGTCACCCTATCTGGTGTGCAATCAGT 2667970 24 100.0 37 ........................ ACTTTTATGATGCTGTTGAGAACATTTACATCAAAAG 2667909 24 100.0 34 ........................ ATTTGGGTTGCCAGTGACAAATAAATACAACAAT 2667851 24 100.0 40 ........................ TCAAATATTTTACAAAAACTGGTAAATTATTGCTTTTAGT 2667787 24 100.0 35 ........................ ATAGCCTTTTGGAAGCCTTCCTATGTAAAACCCTA 2667728 24 100.0 34 ........................ TCATAATAGAACTCCATTAAGCTGTTAACCCCTT 2667670 24 100.0 36 ........................ TTTCTCAAAATTGTGTATTGCATAACGTGAAATATC 2667610 24 100.0 35 ........................ ATTAACAAATAACGTAGAATATCCCCTGAGAAAAT 2667551 24 100.0 38 ........................ GTTATAAGTAGCTTCTTATCTGTCCTGGCTAGCTCTTT 2667489 24 100.0 34 ........................ ATTTCCGAGAAATACTGAAAAGGATTACAGAGGT 2667431 24 100.0 34 ........................ GTATAAATGGCTGTTCAGGAATCAAAAAGATACA 2667373 24 100.0 35 ........................ TTCTTTTTCTGCACTCAATAATTTAAATGTTAAGC 2667314 24 100.0 36 ........................ TTTGTGAAATTCTTAATTATATTAATAGGATTTATC 2667254 24 100.0 34 ........................ AAAATAAGTTGGGTCTAATCATAATTACCGGAAG 2667196 24 100.0 36 ........................ CTCGCATCGTAATGGGTTTGAAAGATCACGAGGCAT 2667136 24 100.0 36 ........................ TACCTGTTCCGCGATACTCTCTTCAGGGCTGTTCAG 2667076 24 100.0 35 ........................ ACTGTTACATACATAGGTGAAGTGTAGTTATAAGT 2667017 24 100.0 34 ........................ TAAGCTTTGCTCTGAGAAACCTAACGTGGCCTCA 2666959 24 95.8 0 ......................C. | ========== ====== ====== ====== ======================== ========================================== ================== 119 24 99.9 36 GTACTAACGACAAGAAACTAAAAC # Left flank : CTGGCAAGGAAGAGACTACCTTCAAGGAGTCAAACCCAGGATTAGAAAATGTAATTTCGGTAAGGGTGACAAATTTATTGTCGTATAAATAAATAACCCAAAAATACTTTTCGACTATAAAGAAAATTCAATATTTATCAGGTTGTCTATACACGTTTTTCCTCTCTACGATGTATGTATTAAAAATCTTCTAATTATTAACGGCTGTTATATAATTAAGAGTAGAAATAATGTGAAAATGTGTTATGAAATATTTAAAGGTTATCCTATTCCTATTGTACATTTATTAGCCCCATCCGGGTTTAGGCAAAACGGTGAACAAAGAACGAGTAAAGAGTATTATGGACTCCCTTCCGGACCCGTGCGGGGATATCTTTAGGGTTCCCCTAAAACTGCCTAAAACCCCCTTCCGTACCTAAGGGAAGAAAATGGACAAGGAAGGAAAGAAAATATTTATAAACGAGGAAATAAGAATGTAAAAATGATGAACACAACGACCA # Right flank : TCCTAATTGCCAAATCTTTATAAGGGGGAGAGATTAATTATGTCTATGGAGAAATCCGTCACGATTCACCTCCCATACAGCAACTCTCAGCTGTACTCAGTCCTTTCGGACCCGGAGTTTGTGCTCCCCAGGCTCTTCCCACCTATAAAGGAAGTGGAGGTGACCGGCGACTCCTTTAATGCATACGGAAGGTTCATGGGGATGAGGTTCCACATCTACGGGATACTCAATAAGGGAGAACAGATAACCTATAAGATCTACCTCACAGCCGGTACCGGGAAAGGGGAGGGGAAACTCGTAATAAGAGTTGCTGACTCTCAAGTGGAGCTCAGGTTCGAGTACGAGGGTTGGATGGAGAGGTTCTCTGGGATCCTCTTCATGGATAGGTGGTTCGACCAGTTCGTCAAGAGGCTAAAAGAGGAAGGAGTTACCACAGGAGGTAAATAGGAGGCTGTAGCTGGACTTTCGAACCTGTTGGTCTTGCTAGCCTAGAGAAACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //