Array 1 19380-17016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFELF010000010.1 Streptococcus dysgalactiae subsp. equisimilis strain NT 15 NODE_10_length_77900_cov_105.381_ID_1461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 19379 32 100.0 34 ................................ AGCTATTTCACGATTAGTCTGTCTAATCTGCTCG 19313 32 100.0 34 ................................ CATAAGGAGGAGCCTTTACTTCAGATTGAGGAGA 19247 32 100.0 36 ................................ TCTTCCACTGCTTGAGTGGTATTAACTTCTGCTAGT 19179 32 100.0 34 ................................ TACATGACCTCGGTTCGAGCTAACCTGAACTGGT 19113 32 100.0 36 ................................ ACTCTTTAAATTATCTTTTTGATAAATGGTACATAG 19045 32 100.0 34 ................................ TTATCTTGGGCAACTACAAACTGATAGTGATCAG 18979 32 100.0 33 ................................ TTTAAATCACTAGGAATTTTTACAACAAAATTG 18914 32 100.0 36 ................................ AGCACTAACATTTTCTTTGCTGTCAAATGATTGAAT 18846 32 100.0 35 ................................ TTTGATAACTCCTGTATGCCCCCATGTACCATCAA 18779 32 100.0 37 ................................ GGTTTCTTTAGCTAGGTTTTGAGCTATTTCCAAAGCC 18710 32 100.0 36 ................................ TTTGTCAGATTTAATTATTAATGAGAAGTCAAAATC 18642 32 100.0 34 ................................ TTTATCTGTAGCAAAGAAAGTAATTCCTTGACTT 18576 32 100.0 34 ................................ TGGCATGGTTTTGAATTCCAATGAATAGCCTTTT 18510 32 100.0 35 ................................ TAAAGAATTTGATTTAAAAATAGTAGGACCTGTTT 18443 32 100.0 34 ................................ AAAGAAGCTATTCAAAATTCATTTTAATATACCA 18377 32 100.0 33 ................................ ATATAAACCAGCATAACCAAAACTTATTGTACA 18312 32 100.0 35 ................................ TCTGGCTTGATTGCGATGTAAAAAGGCATTGTTGT 18245 32 100.0 34 ................................ CATCCATAAAGGCAAGGTTCGTGCTTCCAATGAT 18179 32 100.0 34 ................................ AGTTTCGAAATTAAGCAATTGGGAAAATGCAAAA 18113 32 100.0 35 ................................ TAAAAAGTCGGCATCAACATTTTTAAAACTATTGT 18046 32 100.0 36 ................................ AATAATATCAACAGTCTCCAGTCTCCCATCAAGATT 17978 32 100.0 34 ................................ TTTATCTGTGCCGCGGTTATCATAGAATAAAAGC 17912 32 100.0 34 ................................ TCTTATTATCTTCGATAAACGAGAATACTTTTAT 17846 32 100.0 35 ................................ GCTAAATTTAAAATCCTTGAACTTGCTCATACAAT 17779 32 100.0 36 ................................ ATTTAATAGCTTTCCTGTAAATATTTAAAACTTAAT 17711 32 100.0 33 ................................ TATTGGTATATACAGCAACAACAAGGAAGGTTA 17646 32 100.0 33 ................................ TACCTCAGTATAGGTGTCAGCTTAGACGAATTT 17581 32 100.0 33 ................................ AAAAGTGCAACGAACCAATAAAGAAGTAGCTGA 17516 32 100.0 34 ................................ TTTTTGCATCAGTAAATCAAAATGCAGGAGAGTG 17450 32 100.0 34 ................................ TTTTATAGCAAACTTTTTATTAGGTGTTAGAACA 17384 32 96.9 35 ....................A........... ACAAGATATTGATGATAATAGACCAAAGGTTCAAA 17317 32 100.0 37 ................................ CTAAGTCCCTCTAGCAAATTGCGGACTTTTTCGGAAC 17248 32 100.0 35 ................................ ACTGTATCGTATAACACATTCAAGAAAATTCGCAA 17181 32 100.0 35 ................................ AGGGTATGCGACAAGCACGAGTTATCCTCTTATAT 17114 32 100.0 35 ................................ TTTTCTAACGGAATTAGTACTTTATCTCTTAATGC 17047 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ===================================== ================== 36 32 99.7 35 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATTGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGTTTGGCGGGCAATGGCGAGGTTGTGGCAGTGTCTAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37403-36442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFELF010000005.1 Streptococcus dysgalactiae subsp. equisimilis strain NT 15 NODE_5_length_118917_cov_84.6244_ID_1749, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 37402 36 100.0 30 .................................... TTTTCGTTTGCTAACTGGACAACTCTGTTT 37336 36 100.0 30 .................................... ATCGACTTAGCACTGGTACGCATTGTTAAG 37270 36 100.0 30 .................................... TTTTTGTTGTAAATAAATCAGCAGCTTTTG 37204 36 100.0 30 .................................... ATTTTTATCATTTGAGAGTGATATGTCAAT 37138 36 100.0 30 .................................... TAAAACAGGTTTAACTGCCTCTGGTTTAAC 37072 36 100.0 30 .................................... TAATTCTATCGCCAATAATTTCCACGCCGT 37006 36 100.0 30 .................................... CATTTTCATACCAACGTGGGTCGCTCGCAT 36940 36 100.0 30 .................................... GATTTTGGCAATTGTCATAGCATTATATGC 36874 36 100.0 30 .................................... CAAATTTTTTAACGACATTGATAAAAATGT 36808 36 100.0 30 .................................... GACTGTTTAGGAAGCGTCCAACCTCTTCTT 36742 36 100.0 30 .................................... TTGATGGTTATCTTGAGGAACAAAGACGAT 36676 36 100.0 30 .................................... GCAACACGAACGGTAAAAGTACCTGTTTCA 36610 36 100.0 30 .................................... GGGGTGGAGCGTCCTACGCTCCTCGGGTCT 36544 36 100.0 31 .................................... CGTGGCGCTTAAATGCTCCTATGACACGCTC 36477 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.6 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //