Array 1 12587-12795 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNEC01000023.1 Pseudomonas delhiensis strain CCM 7361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12587 28 100.0 32 ............................ AGATGGAGCGCTATGCGGCGCGCTTGAACAAA 12647 28 100.0 32 ............................ TGGAGGTAAGCGCCTCCGGGAAGCTTGTAATT 12707 28 96.4 32 ......................G..... CAACGACGCCGCCGTGTGTTCATCGTCGCAAG 12767 28 67.9 0 ..........A.AC.......AGT.CTC | A [12787] ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.1 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GTTCGAGCAACTCACCGACGCCCTCGAACACCCGGTTCTCGTACAGCCCGGTGTCCTTGAAGCGTACCCGGTAATGGTTCACCGCCTCCCAGGCACGGGCCTCGTCGAAGCCATAGGTGCTCATGAAGCACTGCAGCAGCGGCGGCCCGATGAAATGCTCCAGCCGGCGCAGGTCCGGCTCGTCGATGCCGAGCTGGGCCAGGGCGTACTGGATCGAACGGGTGATGCCCTCGCGCGGGTCGGTGAGGGTGCCGTCGAGATCGAAGAGGATGTTCTGGTAGTGCATGGGCGAGGCTGGGGCAGGAAGAATCGAACAGAAAGCATACCGCCGGCCTGCGTACCGACCAAACGCGGATGCCATGAGTTCCTACCCTTTTTCTGAAGTACCTTTCAGGTCCCATGAAAATCAATGGGTTGGAGAGAGCCCTGAAAAAAGGGTTATGCGTGTGTAAATGGTACTTTCCCGTGGGAAGTCAGGGAGTTGCGGAGTAATATCCCTA # Right flank : CAGTCAACCCCACGCCTATCCGGCATACCCCTCGGCAATATGCCGGTCCTTCAGCTTCACATAGTTGCCCGCGGTATAGGCGAAGAATGCCCGCTCCTTGTCGGTCAGCGGGCGGGCCTTCTTAGCCGGGCTGCCGACGTAGAGGAAGCCGCTTTCCAGGACCTTGCCCGGCGGGACCAGGCTGCCGGCGCCGAGGATCACTTCGTCCTCGATCACCGCGCCGTCCATGACGATGCAGCCCATGCCCACCAGCACGCGGTTGCCCACCGTGCAGCCGTGCAGCAGCACCTTGTGGCCGACGGTGACTTCGTCGCCGATGGTCAGCGGGAAGCCGTCGGGGTTGTAGGGGCCGGCGTGGGTGATGTGCAGCACGCTGCCGTCCTGGATGCTGGTACGGCTGCCGATGCGGATGCGGTGCATGTCGCCGCGCACGGTGACCAGCGGCCACACCGAGCTGTCGGCGCCTATTTCGATGTCGCCGATGAGCACGGCGCTGGGGT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49839-50300 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNEC01000005.1 Pseudomonas delhiensis strain CCM 7361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49839 29 100.0 32 ............................. ACTCCTTGCGGGTGCGCTCTTGCTTGCGCTTA 49900 29 100.0 32 ............................. TTAGCGGCGGGACGATCTACTCTTCGAATAAC 49961 29 100.0 32 ............................. GTTTTCTTCGGAGCTTCCATGTCGGTCGTGGC 50022 29 100.0 32 ............................. GCCTGGAACACCGGGGCGCCGAACTGGACGGA 50083 29 100.0 32 ............................. TTCTGCAGCTCGGCACGCCCCTGCTGGGCATC 50144 29 100.0 32 ............................. TCATAATCAGCTTCCTCCTAAGTGAGCAGGTT 50205 29 89.7 32 .............GG......G....... TACGTGAACAAGCGCTCCGAGATATGGGGTGA CGCT,GT [50217,50226] 50272 28 86.2 0 A..........A............-C... | T [50298] ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TGGGCGGCGCCGGCTACGTCGAGGACACCATCCTCCCGCGGCTGTACCGCGAGGCCCCGGTGAACTCCACCTGGGAAGGCTCGGGCAACGTCCAGTGCCTGGACGTGCTGCGCGCCCTGTCGAAGGAGCCGGGCGTGCTCGACGCGCTCTTCGCCGAACTCGGCGACGGCCACGGCGACGCCCGCCTGGCCGCCTTCATCGGCAACCTCAAGGCCTCCTTCGCCGACACCGCCGACATCCAGTTCCGCGCCCGCCAGCTCACCGAGGACGTGGCCGTGGCCCTGCAGGCCAAGCTGCTGCTGGAAGCCGGCAACGCCACCGTCGCCGACGCCTTCATCGGCAGCCGCCTGGGCAACGGCGGCCGCGTCTACGGCACCCTGCCGCGCGGCACGGACGTCGAAGCGCTGGTGGCGCGGGCCACGCCGCATCTGGCGTGAGGAAAGGTCGGTAGAAAAGAGAGTCTTGAAAAAACGGCGCTGGATCAATAGGTTGCGGGAAGT # Right flank : GATGGCGCTTCGTTCGCCTTCAAGGGCTATCGTCGCCCTCTGTGTGTCATTGACGCAGATGCTGGCGAATGCTGGCATTTTGCAATAATGTCGAACGCCATTGGTGGACAGTGGAGGTTCCCGGATGGGCGAAGGCAGGCTGTCGTTTTCCGGTCTCAGCGCTGCTGGTCGTGCAGTCTGGGCGAAGAGCGGCGACGAGGGCGGCCATGGGCTGCTGGCGCACCTGCTGGATGTGGCGGCGGTGGCCGAAACGCTGCTGGAAATCGAGCCCGCCTCGACTCGACGTTGGGCCTCCCGTGCCCTTGGCGTCGACGAGGCCGAAGTCGGGCGCTGGGTAGCCGCCATCGCCGGGTTGCACGATTTCGGCAAAGCCATTCCCGGCTTCCAGGCGAAGTGGCCGGATGGCATGGCGGCCGACCAGGCCCATGGGCTGGCCTTCCCTGCCAGTGCCTGCAACCAGGGCCGACACGACCTCGCGACAGCCAGCCTGCTGGGTAGGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59498-59710 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNEC01000005.1 Pseudomonas delhiensis strain CCM 7361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59498 29 100.0 32 ............................. TCGCGGCGGGCCGCCAGCCAGGCCTTGTAGGC 59559 29 100.0 33 ............................. ATTGATCTCGCGGGTCTCGTAGTCCACGGCCCC 59621 29 93.1 32 ................T..A......... AACAACAAGTTGCTCGTTCGCCCCGTCCGTAG 59682 29 79.3 0 ..A........GTA..........TG... | ========== ====== ====== ====== ============================= ================================= ================== 4 29 93.1 33 GTGTTCCCCGCAGGTGCGGGGATGAACCG # Left flank : TTCCCCGCAGGTGCGGGGATGAACCGGTCAGGACGCTGATGACGGTCCAGCGCACCCGGTATTCCCCGCAGGTGCGGGGATGAACCGGTCAGGACGCTGATGACGGTCCAGCCGATGATGTGTTCCCCGCAGGTGCGGGGATGAACCGGAAACCCCATGAGCGATTTCAAGAAAGGCCGGGTGTTCCCCGCAGGTGCGGGGATGAACCGGACCCGCACTATGCGGCTGTCCTGGGCACCCGGTATTCCCCGCAGGTGCGGGGATGAACCGAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACGGTGTTCCCCGCAGATGCGGGGATGAACCGGCGACGAGTCCGGATGTCTTGGCCTAGTCGCG # Right flank : GCCGGAGCAACTGGTCGGCTCACCGTTCAGGCACAAAATCCGTCATCCCCTTCCTGCAAATAAGCAGGCAAGATGGAGCTGATCGCTCAGACAGGAAGCCCACCATGAATGCCGAGCTCGGCGACGCCTTCGTCGTCGCCCATACCGCAGAAGAGGCGGTCGACCGCCTTGCCGCCCTGCACCAGCGCGCCACCGGGGCGCTCAGCCAGGCCCTGCGGCGCTACCTGAAGACCCGCGAGCAGCCGGCAGCCGAAGAGCGTGCGCTGTTCCGCTACCCGCTGCTGCGCCTGTCCTACCTGTGCCAGGGCGAAGTGCCCTCGACCACCCGCGCCTATGCCAAGGTGCAGACGCCGGGCAACTACGCCGTCACCATCACCCACCCCGAGGCCTTCCGTAAGTACCTGCTGGAGCAACTGCGGCCGCTGATGGAAGACTTCACCGTGCGCGTCGAGGTCGGCCCCAGCGAGCAGAACATCCCCTATCCCTACGTGGTGGAGCAG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //