Array 1 9563-11056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMZZ010000006.1 Streptococcus salivarius strain D33t1_170424_B11 NODE_6_length_100965_cov_21.9419, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9563 28 100.0 33 ............................ CAAGGTATTTGCCAAGGCACTAGGTGTTAGTGC 9624 28 100.0 34 ............................ TGAAATTCATCTCTAGATGGTTTGTAGCTAACCA 9686 28 100.0 33 ............................ TAAATACACAGAATGATTCTGAGGTAACACCAT 9747 28 100.0 33 ............................ TCAGTCGAAGTCCCCAAAACTTGGGCTAATTTT 9808 28 100.0 33 ............................ CAGTAACGACAGATTCCACTATCAAGCAGAGGG 9869 28 100.0 33 ............................ CGCTGCTTGCGGTTCAGTGAATTTTGTCGGTTT 9930 28 100.0 33 ............................ CAAAACCCAGCAAATTTAAGAAAAAAGGATGTG 9991 28 100.0 33 ............................ CGCTGGGAACGTGACTGTCACACCATCTGAAAC 10052 28 100.0 33 ............................ TCAATTTAAGGGTCAGATATTCCCTGGCACTCA 10113 28 100.0 33 ............................ CACAACACATAGTGCTGACGACATTTTACATGA 10174 28 100.0 33 ............................ CAGCCTAAGTGAACTGATTGATTTGGGAATCAA 10235 28 100.0 33 ............................ CAAATTGGAAGTTGCCTCTAACAAATATGCAGA 10296 28 100.0 33 ............................ CAACGCACAATCAATGCAGAATTTAATGTCGAA 10357 28 100.0 33 ............................ CTCTGGCAACTTCTTCACAAACTCAGTAAATTC 10418 28 100.0 33 ............................ CAACGACGTTAAAGAGTTGATTTTGGAATACGT 10479 28 100.0 34 ............................ CGCTATATCACAGTTACAGTTACACACCCTACGA 10541 28 100.0 33 ............................ CGTCCAAGAGTTCAGGAGTTGTTTGATTATGCT 10602 28 100.0 33 ............................ CAACGACGTTAAAGAGTTGATTTTGGAATACGT 10663 28 100.0 33 ............................ TGTGCCATCTACAGCGTCGTAAATTTTCGCATA 10724 28 96.4 33 ....................A....... TACGGATGCAAATTTTGACAGCATCTTCAAAAT 10785 28 89.3 33 ........T.....T..A.......... TGAACCTGTTAAACCAGAAATTCCATCTGTAAG 10846 28 92.9 33 T.........................G. GTTGTTTTGATAAATGTTGATTCATCTATCAAG 10907 28 92.9 33 T...................A....... TAGTTTTACGTCCTATCTCATGTACTTCTTCAG 10968 28 89.3 33 .C.................A...T.... TAGACTTCTTCGCTAGATGACGATTTACTTGTT 11029 28 71.4 0 ........T.T...T.T.A.TA....T. | ========== ====== ====== ====== ============================ ================================== ================== 25 28 97.3 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATTATTGAGATTGGAGCAGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTCTAAATTGACAGGAATTTCTAAAACCTTATTAGATAAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTATTTATTGGTGATTTAACTATAGTCGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTAGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGAATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGGCATATGGGATCGAGGATCAAGTTCCTCATAGAGCGTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTTCATTGGGACCTTTTAGT # Right flank : CTATTAATTAGGAAACGCCTGACTTTAGCTAACAGTATGGTACAATTTAATTGAATTAAGAGTGAATTTTTTGTTTTTTTATGGAAAATAATCAATTTACATTTATCCTATAGTTAATTGTTTGCACGTAGATCAGATGTAATCAAGGATTGTTATTGCTCGATTTGAGAATAGGAGCATTTGTTATTATCTCTAATTGTACAATTGTTAAAAAAACAATTAATCTATTTCGGGAGTTTTAAAGATTGTAGATATAGAAAGTAGTAGTTTGATGGAGAAACAAACAAAAGTTTAATGCTATCGAATGACATATGATTATGGCATTAATCCGTTTGTATTTACTGAAGATTATGAATCCACACCAGATTTGTTGACTGAAGATGGCTGTATGATTCAATACGGCAACATCTAAAAAAGAATTGGGCTGATAGGATTAATTCTGGTGGTATTGATGCTTATATAATGGCAATTGCTAGGCATTCAAATGATGGTGGTAAGTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //