Array 1 105019-106205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHSS010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCMOA-C2/C3-TMB-10 NODE_9_length_170059_cov_21.951618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105019 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 105080 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 105141 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 105202 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 105263 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 105324 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 105385 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 105446 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 105507 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 105568 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 105629 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 105690 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 105751 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 105812 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 105873 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 105934 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 105995 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 106056 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 106117 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 106178 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122366-123572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHSS010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCMOA-C2/C3-TMB-10 NODE_9_length_170059_cov_21.951618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 122366 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 122427 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 122488 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 122549 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 122610 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 122671 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 122732 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 122793 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 122854 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 122915 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 122976 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 123037 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 123098 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 123177 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 123238 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 123299 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 123360 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 123421 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 123482 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 123543 29 96.6 0 ............T................ | A [123570] ========== ====== ====== ====== ============================= ================================================== ================== 20 29 99.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //