Array 1 227050-228422 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUF01000005.1 Salmonella enterica strain BCW_3074 NODE_5_length_346877_cov_0.3268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227050 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 227111 29 100.0 32 ............................. ACGAGCCGAATGCGGCGCTCCAGGACTGGACA 227172 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 227233 29 100.0 32 ............................. GCTATGCGGAAAAAATGGTTGCAGGCTGGCGA 227294 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 227355 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAATA 227416 29 100.0 32 ............................. CATATTCAGGCTTCAAACCACAGGTCGGACAT 227477 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 227538 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 227599 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 227661 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 227723 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 227784 29 100.0 32 ............................. ATCGTCTGGCATATGTGCGTAGCCACCTCGCA 227845 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 227906 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 227967 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 228028 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 228089 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 228151 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 228212 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 228273 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 228334 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 228395 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237157-238897 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUF01000005.1 Salmonella enterica strain BCW_3074 NODE_5_length_346877_cov_0.3268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237157 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 237218 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 237279 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 237340 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 237401 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 237462 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 237523 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 237584 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 237645 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 237706 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 237767 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 237829 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 237890 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 237951 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 238013 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 238074 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 238135 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 238196 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 238257 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 238318 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 238379 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 238440 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 238501 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 238562 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 238623 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 238684 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 238745 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 238807 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 238868 29 96.6 0 A............................ | A [238894] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //