Array 1 56720-57143 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 56720 38 100.0 36 ...................................... CAGATGCGTGACGTGTTGAGAACGTGGCTGACCACG 56794 38 100.0 40 ...................................... ACCCACTGTTCCTCGACCTGCCCCGCCTCATCGGCGTTTT 56872 38 100.0 38 ...................................... CCCAAAAAGACGTGCCCTATCTCGTGCATGAGTGTGAG 56948 38 100.0 42 ...................................... CACGCGCGGCGTACGTGCTTCTCCGGCACGATGCCCTCGGCA 57028 38 97.4 40 G..................................... TAAAATGACCACTCCATATCTTTTTTATAGGCTTCTTTTA 57106 38 92.1 0 ...................................TGT | ========== ====== ====== ====== ====================================== ========================================== ================== 6 38 98.2 39 CGTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Left flank : CCTTTAGGTCATCCTGAAAGCGCAATCTCCCCAGCCGGGCAATCTCCCCAGCCGGGCAATCTCCGCAGTCGGGCAATCTCCGCAGTCGGGCAATCTCCGCAGTCGGGCAATCTCCCCAGCCGGGCAATCTCCGCAGTCGGGCAGTCCACCGCGCCCGTCAGCCCACCGCACAGAAAAAGTGGGCCGCGGCGCTTGACATTCTCCAGCCGCTTACATACCCTGCAATCGTGTGGCGTTGAAATCAGTGCTATGCCATTGAATTCAACGCGCGTTGCAGACCTAAAATGTCCGCTCAAGGCGGGGGGTCTGCGGCACACGCGCAAGATGTTCTTTTACATAGGGTTGCGCAAAATGCCTTCACGATGGCTTCATCAAAAGCCATGAAGCAAGCGCATGCTAGCACAGGGTCTGCGGAAATGACGCCTCCGAGCTACGACCAACGGCCTGCAGCGGCCGCAACCGCTGCCTTTCGCACCGGTATTCACCTCTCTTTCAGGTAC # Right flank : TCTTCCGGCGATGAGGCCTGACCGACGTTTGCGCAGTACCTGTTGTAAATACACAAACGCCTGTCCGCTGCTGCGGGCGGGCGTTTGGTGTTTGGGGGCGATGCGTGCACACCTGCCGTGCGGGCACTCTCCGCAATCGGCCGTTGCCTTCGTACCCGGAGATCGCACCATACATAGAACATAGATATGACCTTCGGCCCCACCACGGGCATGACCTCTGGCCCCATCATAGATATGACCTCCGGCCCCCACGTCATTCCCGCCGGTCGTTGCTCGCGATGACAAGACGGTTAAGCTGTTTTGGGCGTTGGGCGTGCCGTTGCCCCTACCGATCCGAGGGGCCGTTTGGCCATCCCTAACACGTTGTTACTGTGGGGCGCGGAGCTGCTGGATGACCGCGCGGCTTTTGAGGCGGTAGGCGTCCTCGAAGTGGTAGCGGAGGTAGTCGTCGATGAGCTGCCCCACCTCGGCGCGCACATCGGGGGCGAGGCGCATGCGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 410744-410383 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 410743 30 100.0 36 .............................. AATCGTTGTGCGCATCGCACGACCTTCGACGACGAC 410677 30 100.0 36 .............................. TCTCGGTGGGCTGCCCCTCTACGCGGTAGCGATCCA 410611 30 100.0 36 .............................. GGCATGAGTAGCAGCACGCAGGTCACGGAGCGCGTG 410545 30 100.0 37 .............................. CCAGACGTGAGCTCGATGTCATCACGCTGGAGGCGTG 410478 30 100.0 37 .............................. TAGCGACTCATGACATCTGTATGACTAGAATGATCGT 410411 29 86.7 0 ........................C-..TC | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 37 CTTTTAATCGCACCTTTGAGGTATTGAAAT # Left flank : GCGAGCAGCAGCGCGTGGCCATTGCCCGCGCCATTGCCAACGACCCGTGGGTGCTGCTCGCGGATGAGCCGACCGGCAACCTCGACCCCGTGGTGGCCAACGAGATCCACAAGCTGCTGCTGGGCCTGCACCGCCAGGGCATGACCCTGCTGATGGCCACGCACGACTACCGGCTCGTGAAGCAGTTTCCGGCACGTACGCTGGCCATCATGAACGGCCAGGTGGTGGATGTGGACCCCGAGACGCTGTAGGTTATGGGGACGCCGCGGGGCGGGGATTGTCGTCGGCCGGCGGATGGGTGGCGGTGGATTCATCGCGGGCCGCGGGCTTTACGCAAAAAGACGGATGTTAAATGGTTGACATGCAAGAGCTTGCGACAATGTCGTCGTCCCCGGGGGGTTTATGCGCGACCGCCGGGCGACGACATTGCGCCCGAAAAATTCGACGCGCACCCCGCGTTCATTTGCATTTGGCCGGGATCTTTTGCAGCATACGGTAGG # Right flank : ACGTTGACGGCCGGGCCTTCGGTGACAGGAGGCGCCGGTCGTTGCTTTTCTGTGGGCTGTCGGGCATCTTGGAAGTCCTTCGGCTCACCTTTTCCCTGACGTTGCCCCTTTCATGCGCTGGGTTTTTCTGCTGCTCCTCCTCTGCGCGTCGGCCGCGCCGGTCCACGCGCAGTCAGCCACCTCGCTGGCGTCTGCAACCTACGGCACCATCTACCGCCCCTCCGCCGTCCACTACCGGGTATTGCCGTACGGCGCGTACAACATCATCTACCAGCGCGGCTACGAAGCGGCCGCGTACCGGTTTGGGCGCATCCTCACGAAAAGCGCCGCCGTCACCGACTCCATCGTGGGCCCGCACCTGGCCCCGCGCGTGCGGATGCCGGTGGTGCTCAATGGCTACAACGACCGCTCAAACGGCTACGTGACGCCGCTTCCATTTAAGCAGGAGATTGAAATTCCCAGCATTCAGGGCAGCCCCATCCCGCTGCGCTATTCGTCGT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGCACCTTTGAGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 919273-918760 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 919272 37 100.0 42 ..................................... AATCATAACAAAAAAAACAAGGAAAGAAAGAAGAACTATTTA 919193 37 100.0 46 ..................................... CGACCGACTCTGCTGAGATACCTCGACCGCTTGTCCTCGCGGTCGA 919110 37 100.0 39 ..................................... TGTTGTGTACTCCCTGCGATCATTTGTCCGGTCTGGGTG 919034 37 100.0 42 ..................................... CTTAATCCTTATGAGTCACCCAACCCCTGTCAACATCCGCAA 918955 37 100.0 43 ..................................... GGCCGAACTGGCGCGCGCTCCGCCGTTCTTTCGCGACGGCCTC 918875 37 100.0 42 ..................................... TCAACCTTCGGCAGCAGAAGCTTTTTCAAGCTCCACATCAAA 918796 37 89.2 0 .................................TCCT | ========== ====== ====== ====== ===================================== ============================================== ================== 7 37 98.5 42 GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Left flank : TGAACAACCATCTGAACCATCGACGCCTTGTTTTTGACATCAACCACTGTTGTCATTGCGAGGAGCCGAAGGCGACGTGGGGGCCCTTGGGTCATGCTTGAAAGCGCAATCTCCCCAGCCGGGCAATCTCCGCAGCCGGGCAACCCTCTGCGCCCGTCAGCCCACCGCACAGAAAAAGCGGGCCGCGGCGCTTGACATTCTCCAGCCGCTTATATACCATGCTTTTGCGTGTCGTTGAAATCAGTGCTATGCCATTGAATTCAACGTGCGTTGCAGACCTAAAATGTCCGCTCAAGGCGGGGGGTCTGCGGCACACGCGCAAGGTGTTCTTTTACATAGGGTTGCGCAAAATGCCTTCACGATGGCTTCACTAAAAGCCATGAAGCAAGCGCATGTTAGCACAGGGTCTGCGGAAATGACGCCTCCGTGCTACGACCAACGGCCTGCAGCGGCCGCAACCGCTGCCTTTCGCACCGGTATTCACCTCTCTTTCAGGTACC # Right flank : TGGCGCGTCGTCCCTGTGCCTGAGCGCTACCCTATGTCCATCGCCGTGACAAGACGGCGCGGCGCCCACCCGCGGCCCACATCCTGGGGCGGCCGGTTGCGGTTTACGTACCGCTTACAGAACGCATCCGCCGTCAGGTAATATGAGAGGCCCGTCGTTTGCTCTCATCAACCAGTTGCTGCTGTGGATTCCTCACCAACCCGCGTGGGCGTTGTGCTGGGCGGGGTGGCGCCCGAGCACGAAGTCTCCGTCATCTCTGCGCTCCAGGCGGCGCACGCGCTCGATCGTGACCGCTACGCCCCCCTCCCGCTCTACATTGCCAAAGACGGCACCTGGTACACGGGCGATGCGCTGCTCGATGTGGCCACCTACCGCGATCAGGCGCGCCTGCGCGACGGGGCCACGCCGCTGGTGGTGCAGCCGGACGGCCACGGGCGCCTCGTGCTGTGGGAACGCCCCGATGCGGTGCCCGCCTGGCGCGCGGCCCGCCGGTTTACCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 4 937846-937654 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 937845 37 100.0 43 ..................................... GGGGCGGGCATGAGCGTTTCAAGCTCCGCGATGAAATTCTCCT 937765 37 100.0 38 ..................................... CTCAAAATTCACGGTTTGTCCTTCGTTAATTGTGAGGG 937690 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 3 37 100.0 41 GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Left flank : GCAGTTTGATCACACCACCCCGAACAACCATCTGAACCATCAACGCTCTGTTTTTCATCAACCACTATTGTCATTGCGAGCGAACGCAGTGAGCGTGGGGGCCTTTAGGTCATGCTGAAAGCGCAATCTCCGCAGCCGGGCAACCCTCTGCGCCCGTCAGCCCACCGCGCACAAAAAAGCGAGCCGTGGCGCTTGACATTCTCCAGCCGCTTACATACCCTACTCTCGTGTGATATTGAATTCAGTGCACAGCCATTGCATTCAGCGCGCATTGCAGACCTAAAATGTCCGCTCAAGGTGGGGGGCTGCAGCACACGCGTAACGTGTTCTTTTACATAGGATTGCGCAAAATGCCTTCATGATGGCTTCACCAAAAGCCATGAAGCAAGCGCATGCTAGAAAAGGGTCTGCAGAAATGACGCCTCCGAGCTACGACCAACGGCTTGCAGCGGCCGCAACAGCTGTCTTTCGCACCGGTATTCACCTCTCCTTCAGGTACC # Right flank : CGGTGGCATTTTAGCATCTCTTTGCGAGCATCAAAACGAAGCTCTTGCAATTCCGCTCGACCAATGCGATGGTTGTTTTACCGAAAGGACGGCAACTGGGGTTGTATCGGTGGATCAGTAACGACCTTGCCTACCTAGCACCCCTGGATGCTGACGTGGACGCAATCGTGCACATCGATCAGGAGCGATCCGTCATTTCTGCGCTCACGCAAGCGGGCAAGAAGGTGAAGACGTGGACCCTCGCCGGTGAGAAGCTAGAGCCCGTGCGTAGCGGTCCGCACCTGCCGAAGGGGTGTCGCGGCCACTGCGTCAACGTCATTGGGTCGCAAGTATACGTTGGCGGTCGGGCCAAGAATGACAAGCGCGCGCTGTTGTGGCGGTGCACGCTCGGAACGCCGCATGCTAGCTGGACCCAAGTCGCGGTGCCGCCCCCTGTGTGCAAATCTGGTAAGACCGTAGATGCGCTCTTCCGCGACGGCAACCGGCTCTTGGCGGTCGAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 5 940953-940600 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 940952 37 100.0 42 ..................................... CCATTACGGCGCTGGTCGCGACGCCGCTTACTACGGCGGCGT 940873 37 100.0 40 ..................................... CGCCATCTTCAAGGCCATTGACCCGATCAAGGAAAGATGA 940796 37 100.0 42 ..................................... ACGGTGATGTCCTCCTTGGCGGAGAACAGAGTTCCTTCGAAG 940717 37 100.0 44 ..................................... GCGTCTTTAGGAGCGTGCTCTTTGTACCACTGCACTGCTTTCCG 940636 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 5 37 100.0 42 GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Left flank : ACCGCGAACAACCATCTGAACCATCAACGCTCCATTTTTCATCAACCACTGTTGTCATTGCGAGGAGCGGAGCGACGTGGGGGCCTTTAGGTCATGCTGAAAGCGCAATCTCCGCAGCCGGGCAATCTCCGCAGCCGGGCAACCCTCTGCGCCCGTCAGCCCACCGCGCACAAAAAAGCGAGCCGCGGCGCTTGACATTCTCCAGCCGCTTACATACCCTACTCTCGTGTGATATTGAATTCAGTGCACAGCCATTGCATTCAACGCGCATTGCAGACCTCAAATGTCCGCTCAAGGCGGGGGGTCTGCGGCACACGCGCAAGGTGTTCTTTTACATAGGGTTGCGCAAAACGCCTTCATGGCGGCTTCACCAAAAGCCATGAAGCAAGCGCATGCTAGAACAGGGTCTGCGGAATTAACGTATCCGAGCTACGACCAACGGCCTGCAGCGGCCGCAACCGCTGCCTTTCGCACCGGTATTCACCTCTCCTTCAGGTACC # Right flank : GGATCGTGCTGGCCCTGAAACTGTACAGTAGCTATGCCTGAGAGGGGTGACGGCTGCGACCTAACAGTCCCCCAAGGCGCTTATTTGGCTACGATGCGGCCTGGTACTGTATGTATTTGACTCGTCACTCGTATCCCAAAAACTTTTCACCCCTCATAAAACCGTTATTGCAAAAAATAAATGCTCGGACGTTTGGGTCGTCTATCTGCGCAAGACATGTGCGTGAAGAAGCGTACGAGCTGTTCTAATTTGCAGTGATACTCTATTGCGTCAAGCACAGCGGCGACGCGTTCAGGGGCATTGCCTACCTGCTACTCACAGTCCTGTGTAACTGGGAAGCAGCGCTTAGGTAGTGGTGTTGGCTTTGTACATCTGGCAGCGCAGCCCCCAGGGTGCGTATCGAATTCAGCGCACGACGTATGAATGATGCTGCTGCCGCTTGAAAATCAGCGACACGATCGGAGAACTCGTCGCCCCGTAGGAGGGCGTGATCGTTCGTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 6 994215-993654 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 994214 30 100.0 36 .............................. ATCATCGGCGGGCTGATCCCAATGGCCTCAGGCGGT 994148 30 100.0 37 .............................. TTGTTGACGTCCTCGCTCACCTCGATTTCTGCACGTG 994081 30 100.0 36 .............................. TACACGAGGCTGGCCCTGCACTCCTGGCACCACACC 994015 30 100.0 37 .............................. GTGGCTGCGCTGTATGAGACGGGCATGATCAAGCACG 993948 30 100.0 36 .............................. CATGCTCACACGCTGTAAGCCCTTGTTAGCGTTACC 993882 30 100.0 35 .............................. TCGCTGTCCTTGACGACCGCGAAGGCGTCGCACTC 993817 30 100.0 36 .............................. TGGTCAAGCGATGGTAGTGCAACGTCTCAATGCCCT 993751 30 100.0 37 .............................. CCAGTTTGCACAACGTGAAGGTATCCATCCTCCACGG 993684 30 96.7 0 ..........................C... | T [993656] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.6 36 CTTTTAATCGCACCTTTGAGGTATTGAAAT # Left flank : GGTTTGAGCGGTCGAGCGCATCTTCCATTTCGCGGTAGGTGAGCGCCTCGCCGTCGCGCAGGAGTTCGTACAGGGCCTGCTGGGTGTCGTTAGAGAAGTGGTGTAGCACGGTGTGGAAACGAAACTAGACGGGAAAGCTTCATTAAATGCTTACACTACAATACAAGCCGTTAACGGGAACGTCAAGGCATGCACTTGCGCGGTGGAGCAAACGCCAGCGCATCTCGTTGATGCTTCCCCAACCGAGGCGATTGCAACGCCCTGCCGATGCGCGGATGTCGTCGCCCGGGCTCGTTGTTGAACGATCACAACCGATAATGTGCGCACGGCGACCCGATGATTGACTCCACCCTGGTTCAAAACAAGAGGTTAGCGTCATGTCGTCGTCCCCCCGGGGGTTTATGCACGACCGACGGGCGACGACTTAACGGGCCCACGCCCTTCGCTAAAATCGCCGCGCACTTGCATCTCTCCCCGCTTTTTTAGAGGTTGGTGGTAGG # Right flank : CGGTTCGCAGCGGCTGTTTGGATCCGTTACGGACCTTCGTTGCTGTCTGCGCACGCCGTGGCGGTGGTGCGTTGCTGTAGGGTTCTCCTATCTGTAGCGTATCTTCTGGGCGTGTGGCTGTGGGCGCTTGATCGCTTGCACGGGCGTTCCTGATGCATCGCCCGGTGGGTGGACGCCCGGTGTCCGGAGTGGCCGCAGTGCTGTCGTAAGGTGGAAGCGGATCGTTTCGCAGATCCGTTGCCGCTGCACTGCTTCTGCCCCCCGTCCGCCCAATGCCCGCTTCAGACGTGTCATCCGCGCCGCCCGCTCCTCCTTTCGCGTGGGCGGCATGCTCATCGGCTACTACGTGCTGTGTCCGCGCAAGGCCTGGCTGTCACCGCTGCAAATGGCCTTTGGGGCACGCGTAGCGTCCCGGCATGCAGCATGTGGCGGGTGGGGCCATGGGGCCATCAACACAAAACGCCCCACGAAGCGCGCGGCTCCGTGAGGCGTCATGGCGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGCACCTTTGAGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 7 1579612-1577747 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 1579611 28 100.0 33 ............................ TGGCCGAGCAAGTCACGGTAAAAATTAATGTGG 1579550 28 100.0 33 ............................ GAAGTGTCGTACGAGGATGCCGAGACACCAAAC 1579489 28 100.0 33 ............................ GCATGCCGAAACGAACGAGGATCGCTGGAAGGC 1579428 28 100.0 33 ............................ TCTTCCGCGCCTCGTGGATCGACGAAGGGCGCG 1579367 28 100.0 33 ............................ CAACTTGGGATTCATGGCCGAACAGTTCGGCAC 1579306 28 100.0 33 ............................ CGTCAACGCGAAAACCGATCTGTCAACCGATGG 1579245 28 100.0 40 ............................ GATGCGCAAGAGCGTGTGGACGCCGCGGAGGAGCGTGTTG 1579177 28 100.0 33 ............................ TTCTTCGACGCACAAGATTATGAGGCCATCCGG 1579116 28 100.0 33 ............................ TCTGGAAAGCCCTGGAAGCATCGGCTTCCGGGT 1579055 28 100.0 33 ............................ CTCACGATCCAGTTGGCTTGACTGCGCACGCTG 1578994 28 100.0 33 ............................ GCTGCAGAGAGCGAAGCACAGACTTGAAAGGAC 1578933 28 100.0 33 ............................ GTAAGCCGGGGCGGGCCGGCGAAGCCGCCCACC 1578872 28 100.0 33 ............................ CCCGCGCTCAGGCGGGCGGTGACCGGGTTGGCC 1578811 28 100.0 33 ............................ TTTTTTGCGACGATCCCGAATCCTACCTCACGC 1578750 28 100.0 33 ............................ GGTAGCGCCTGTGCGCAGCGCCAAGCGAACGGG 1578689 28 100.0 33 ............................ GCCGCCCATGGACAGCGTCACTCGGCGCTTTGC 1578628 28 96.4 33 ................T........... GTACGACGACGAGTACGGCTGGGTCATGACGGA 1578567 28 100.0 33 ............................ CATGATCGGCAACTGCGGCCTGCTCATCGAGGC 1578506 28 100.0 33 ............................ CGTGACAGCGCTGGGGTTATGGTGCCAGCCGAT 1578445 28 100.0 33 ............................ TCATCGTGTAGAGGTCGGAGTTACCCTTGCTGG 1578384 28 100.0 33 ............................ GCACGAAGGTACATCGATCCGCGAGCTGCTGGA 1578323 28 100.0 33 ............................ GCCGTAGGCTCGGTTGGCTACCGTGTGGTAGTA 1578262 28 100.0 33 ............................ TGACGAATACGATCATGAAAGTTCTTATTTTGC 1578201 28 100.0 33 ............................ CATAATGGAGGGTCAGCAGGATGATCGTGCCTA 1578140 28 96.4 33 .......T.................... TGAGGTTGACCACAATCTCCTCCCCACCGGCAC 1578079 28 100.0 33 ............................ TCCGATTGAGGGCAGCCGCGGGCGCATTGGCGG 1578018 28 100.0 33 ............................ GCGTGATAGGCTTGACAATCTTCGTCTCAGAAT 1577957 28 100.0 33 ............................ TGAGCAGCGTAGGACTGATACTGGGCAAGAGGG 1577896 28 100.0 33 ............................ CTACGTCGACGTCGATGGCCACCGTGGCGAGAT 1577835 28 100.0 33 ............................ CGATTCGCTTCCAGGCTGCATCCGCGTCGCCGC 1577774 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================== ================== 31 28 99.8 33 GATGACCCCGCACACGCGGGGATAGACC # Left flank : GACGATCGCGGTGACGCGTAACACGCCCAACCGCTTCAACGGATTTTTGGCCTCATGCATGCACGAGATTGCCCCCGGCGTGTATGCCGCGCCGCGGATGAAGAAGTCTGTTCGGGAGCGCGTCTGGCATGTGATGATGGAATGGGCCGGACTGCTTCCGCCGGAGGGCGGCGTGGTGCTTTTTTGGAAGAGCCGGCAGGCCCCCTCGGGGCTGGGCGTTCGGATGATCGGGTGGCCCAAGAAAGAGATGGTCGACCACGAAGGGTTATGGCTGACCGTACGGGGGCTTACTGCCGCGCATGACATCGACGAGCTGCAGGATCTCGCGCGCGCTGCGGAGCCCACGCCCGACGCAAACGATCCGGTGCTTCGGTACCTACCAGCCGAGGGCGAGGACACCCCGTAGGGTCTGCCGGATTGGCAGCAGGGAGCCTTGCATCTGGCTATGTTCTTTGATATAATGAGATTGATGTACCTGTGCCGTGACATATCGGCGCAGG # Right flank : GGATCAAACTGATGAAACAGACCTGTTTTGCTCAGCAGATGGTGTGCAAGACAAGTCTGCTTTACTCATTGCGCTCTTCCTTCAATAATCAGCAAAGCAAGTTTCAGCACAAGAACTGAGAAAAACTATGAGCCACGAGTCGAAAAGACTGCTATCTGGTAAAAATATTATAAATCTTGTAAAAGTATTAATTATTTTTGCCATGGTTACTTCAATAGCTTACCTCTCAAATTTATTTGGGTTGCGGACTCACATTGGTGGCCGGGTACTGCCATGGGTTCTGATGACCGTATTCGGAGCTGTGTCTACTTGGCTGTTCAACATTTACTCCTACGACTTTACAGCCTGGGTTTTAGGGAGGTCGGACGAAGTTCGGTAACGGATGTTATGCGAAACTCCTCACGCGGCGTAACACGGCCAAGCACCCGGACGCAGGGCTGGTGCTTTCATGCTGCCAGTGGGCCAACCTGAATACTCGTCGATTCGGCTGGCGATTGTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGACCCCGCACACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 8 1919263-1919608 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1919263 37 100.0 41 ..................................... GTATAACTCATGTCCTTCTTTAAACGCAAGTCTTTCTGCTT 1919341 37 100.0 38 ..................................... GCCTCGACGACCGCCAAGACGTTTCCGTCTTGACCCTC 1919416 37 100.0 40 ..................................... AGGTTGGAATCTAATCCGACCTGCGGAAGATCAAGAGCCT 1919493 37 100.0 42 ..................................... ACATACGACGGCCCCGGTTTTCTACCTTCCCGTCTCGTCCTG 1919572 37 91.9 0 ..................................TGG | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 98.4 40 GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Left flank : TTGCGCGTGCAGATGGGCGAACCACCCCAAACGGCCATCTGAACTATCAACGCTTCATCTTTCATCAACCATTGTTGTCATTGCGAGGAGCGGAGCGACGTGGGGGCCCTTGGGTCATGCTTGAAAGCGCAATCTCCCCAGCCGGGCAACCCTCCGCGCTAGCCCACCGCAAAAAAAGCGGGCCGCGGCACTTGACATTCTCCAGCCGCTTATATACCCTGCAATTGCGTGAGGTTGAAATCAGTGCTACGTCATTGAATTCAACGCGCGCTGCAGACCTAAAATGTCCGCTCAAGGCGGGGGGTCTGCGGCACACGCATAAGATGTTCTTTTACATAGGGTTGCGCAAAATGCCTTCACGATGGCTTCACCAAAAGCCATGAAGCAAGCGCATGCTAGCACAGGGTCTGCAGAAATGACGCCTCCGTGCTACGACCAACGGCCTGCAGCGGCCGCAACCGCTGCCTTTCGCACCGGTATTCACCTCTCCTTCAGGTACC # Right flank : GCTTCCGGCGATGAGGCCTGACCGACGTTTGCGCAGTACCTGTTGTAAATACACAAACGCCTGTCCGCTGCTGCGGGTGGGCGTTTGGTGTTTGGGGGCGAACCGTACGCTCCTGCTGCGCGGGCGTCCTTTGCAATGGGGCGTTCTTCTTCGTACCGGGCGATTTCATCGCAGCTATGGCCTTCCGCCCTAACGGTGGTATGGCCTTCGGCCCCCACGTCCTTCACTTCGCACCAGTGGCATGACCAAGGCCCTTCAGTCCTCGCGATGACAGGAGAGGAGTTTGCTGTTTTGGTGCGCTGCGCGTGCAGTTTGGGCACACCACCCTGAACAGTCCGAGCCATCGACGGATGGTTTCTCTCCTGTCCTGTCAACGGCCGCGCGAATAACACGAAGGATCCGCTGGATTTTGCGCAGCGCCTTTGTTCTCTTGTTCATGACGGTTCCCGATCTACGCGCGGGGGCCGTTGCTGTCGTTCGTTCTTCTGCCTGTGCCGCCA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 9 3023528-3022280 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3023527 28 100.0 33 ............................ TTCCGGGCGACGGATCGGCCTGCGGCGCTCCGT 3023466 28 100.0 33 ............................ GGTAACGAACAAGTAGAGGGACAGTCATGGCAG 3023405 28 100.0 33 ............................ CTGCCGCCGAAACCGCCGCAGGCTTGACGTTGG 3023344 28 100.0 33 ............................ GCCGTCCACCGTCGTGGACAGGTTCGCAAAAAC 3023283 28 100.0 33 ............................ GCGACATGACGGAGTTTTCCCTTGTCGGCGTGC 3023222 28 100.0 33 ............................ TCGAAGCTGGCGCCGACCTTTTCGCGCGGCTGC 3023161 28 100.0 33 ............................ GCTCAGTCACCACCCTCGCCCCCGCTTGGACAC 3023100 28 100.0 33 ............................ CTGGGCCAGTGAGCCCAAGAAGAAGCGCCGCCT 3023039 28 100.0 33 ............................ GACGTTCGGCGTTTGTGTGTAATTGGGTGGTGC 3022978 28 100.0 33 ............................ TCGCACGCCGGACGAATCCGTAACGATAGACCC 3022917 28 100.0 33 ............................ GAAGATCGTGCAGCGACCCGAGGACGTAAGCGG 3022856 28 100.0 33 ............................ GTGCATCGACGAAGAAGCGAAGTCTTTTTGTGT 3022795 28 100.0 33 ............................ GCGGCTCACCTCGTCGCCCAGCACCTCCGTGAT 3022734 28 100.0 33 ............................ CATGATTTTGTTTGAGCTTCGAGACATGCAGGC 3022673 28 100.0 33 ............................ GATGGCGAAGTTGACCTGTGGGCCGAAGAAAAT 3022612 28 100.0 33 ............................ CGAGTACACGAACAAGCGCCGCAACCGGCACAC 3022551 28 100.0 33 ............................ GTAGATGTACGCCACCACGCGCTCAGCCGTCGC 3022490 28 100.0 33 ............................ GTCCATGGGTTTTGGCGGTTTAGAGAAAAAAAA 3022429 28 100.0 33 ............................ GCAGCGCCGGCAGCACGCGCGTACCTCTTCGAC 3022368 28 100.0 33 ............................ GTCCATGGGTTTTGGCGGTTTAGAGAAAAAAAA 3022307 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 33 GATGACCCCGCACACGCGGGGATAGACC # Left flank : GCCGGAGCATGGACGCCCTCAACGCCTACAGCCAGCGCATCTGGCAACGCATGACCGTCGACGGGCGGGAAGACATCAACCAGTACGACCTGTTGATCTCTAAGACGGAAGTCGATGCCGCGGCCTACGATCATGTGCTGGCCGACCGGCTCCCCGCGCCGCTCCTGCACGACGCCCGCGCCACCGCGCCGTCGCTTCAGCTGCTCCGCACCTGCCTGATGAACCCCTTCCAGGCCGATTGGAACGCCGCCGACCCGCCGTTTGCCACCCGCGTGGCCGATTACATCTACACGATCGCCCACGATGTGGCACCGTAAGGCGCGGCCGATCGCCACTAAAGAATCGTAGAGACATCCACGCCAGCGCGTGGCACTTGCAAGAGAACGCACCACTCAACATCTTGTATAAGCTGCCGGAATGACAGAAGGCGAGCTTGCATTCGCAGATGTTCTTTGATATACTGGGATCGAAACACCTGTGCCGTGACATATCGGCGCAGG # Right flank : GAAAGCGCAGGCGAAGTCCGTCACTAAAGAGACGATGGCCCCAATAGACCGTGCATGAGCGCCGCGTAGGGCTTGTTGTTACTCACGCCGGCCTCCGCCTCGCGTCTCAGGTTGTCCCCTACGCCCTCAAGCATCACCTCGGCCAGGTCCCGCATCAGCGGGCTGGTACGCTCCAGCCGATCGGTCAGCCGCCGCAACCGCCTCGTCGTGCTACCCAAGTGGGTCGGTATTAGACTCCCGTTCATCGGAGACCGCTCGTCCTCTAAAAAGTTTTTGCAATCCTTCAGGCCCAAACTCTTCCACGTCCGGTTTCAAGCGTTTGGTGCCGCGTCTAATATTCCGGTATCGGGGTATGGGTAGCCCCCGACCTGAAGGGTGAGGGCTTGCACCAGCCCTCTTTTTTGCTCTGGGCCAAAGCGGTTGCACTGTTTGCCACGACCTGCCATGCGCTTTAGATGTGGAACCGGAACTCCCAAATTGAATTTGCTCTTCATAATCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGACCCCGCACACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 10 3177671-3177863 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3177671 37 100.0 42 ..................................... CTGGCATTCCGGACCAAGGGAGGTACTGGTCCAAGACGATGA 3177750 37 100.0 40 ..................................... TTTGGCTGGTCTATCGGCACAATCGCCGATAACCAAAAAA 3177827 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 3 37 100.0 42 GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Left flank : ACACCACCCCGGACGGCCATTTGAACCATCAACGCGCGGCTTTTCGCGCACCCCGCAATGTCATTGCGAGGAGTGAGCGGATGCGAACGACGCGGCAATCTCCCCAGCCGGGCAATCTCCCCAGCCGGGCAACCTCCCCAGCCGGGCAACCCTCCGCGCTAGCCCACCGCAAAAAAAGCGGGCCGCGGCGCTTGACATTCTCCAGCCGCTTACATACCCTGCAATCGTGTGGCGTTGAAATCAGTGCTACGTCATTGAATTCAACGCGCGCTTCAGACCTAAAATGTCCGCTCAAGGCGGGGGGTCTGCGGCACACGCGCAAGGTGTTCTTTTACATAGGGTTGCGCAAAATGCCTTCACGATGGCTTCATCAAAAGCCATGAAGCAAGCGCATGCTAGCACAGGGTCTGCAGAAATGACGCCTCCGTGCTACGACCAACGGCCTGCAGCGGCCGCAACAGCTGCCTTTCGCACCGGTATTCACCTCTCCTTCAGGTACC # Right flank : CGGGCCGAACCACTCACGCTTACTACCCTGCAATCCGTGTGGCGTTGAAATCAGTGCTACGTCATTGAATTCAACGCGCGCTTCAGACCTAAAATGTCCGCTCAAGGCGGGGGGGTCTGCGGCACACGCGCAAGGTGTTCTTTACATAGGGTTGCGCAAAATGCCTTCACGATGGCTTCATCAAAAGCCATGAAGCAAGCGCATGCTAGCACCAGGGTCTGCAGAAATGACGCCTCCGTGCTACGACCAACGGCCTGCAGCGGCCGCAACAGCTGCCTTTCGCACCGGTATTCACCTCTCCTTCAGGTACCGTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAACCTGGCATTCCGGACCAAGGGAGGTACTGGTCCAAGACGATGAGTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAACTTTGGCTGGTCTATCGGCACAATCGCCGATAACCAAAAAAGTCGGAAGTCTTGCCTCCATTCCAAGAGGATTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 11 3178174-3178761 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 3178174 37 100.0 42 ..................................... CTGGCATTCCGGACCAAGGGAGGTACTGGTCCAAGACGATGA 3178253 37 100.0 40 ..................................... TTTGGCTGGTCTATCGGCACAATCGCCGATAACCAAAAAA 3178330 37 100.0 42 ..................................... GGGCCGAACCACTCACGGTTAATGCTTCCGTGGTCCACGAAT 3178409 37 100.0 43 ..................................... AGCGTCGCGACCACGTCGCGACCCTTGTAGTCGCCGGCCGCCA 3178489 37 100.0 47 ..................................... ACGATCGCCGCGAACGGCTCTTCGTGGATCTCGAATTGGTCGGCCTC 3178573 37 97.3 37 .........T........................... GGTGCAACACCCGATCATAGTCGCCGGCGTTGATAAG 3178647 37 97.3 41 .........T........................... GTGAATTGCAGTACACGGCGTTACGGTATTACGAATGGTGC 3178725 37 91.9 0 ..................................TGG | ========== ====== ====== ====== ===================================== =============================================== ================== 8 37 98.3 42 GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Left flank : GGAAGTCTTGCCTCCATTCCAAGAGGATTGAAACCTGGCATTCCGGACCAAGGGAGGTACTGGTCCAAGACGATGAGTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAACTTTGGCTGGTCTATCGGCACAATCGCCGATAACCAAAAAAGTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAACGGGCCGAACCACTCACGCTTACTACCCTGCAATCCGTGTGGCGTTGAAATCAGTGCTACGTCATTGAATTCAACGCGCGCTTCAGACCTAAAATGTCCGCTCAAGGCGGGGGGGTCTGCGGCACACGCGCAAGGTGTTCTTTACATAGGGTTGCGCAAAATGCCTTCACGATGGCTTCATCAAAAGCCATGAAGCAAGCGCATGCTAGCACCAGGGTCTGCAGAAATGACGCCTCCGTGCTACGACCAACGGCCTGCAGCGGCCGCAACAGCTGCCTTTCGCACCGGTATTCACCTCTCCTTCAGGTACC # Right flank : GCTTCCAGCAGTGCCTGACACGCGCTAACGCCGCACCCCGAGCATATACACCAACGCCTGCCCGCGTCTGCGAGCAGGCGTTTCGTGTTTGAAGGGGGAAGGAGGTGCCCCAAGGCTCCATCCTTGCGCACGCGGTCGGCGGGCAGCGTTGCTGCGCACCGCCTTCCGCCCTAGGCCGCCCGGCGCAGGCGCACATCCAGGTACCCCGACAGGCCCACATAAAACGCCGGGTAGAGCATAGACACCGGCAGGCCCCAGGGCTGCGCCCACGTTGGCACGGCCGGGTAGGTGGGCAAGAAGCCCACCAGCAGCGCCAGCCACCCCAGCGCGCCGCCAATGATCCACGGCTTCCAGGGCGACGGCGCCTGGTTGGGATAGATGAAGCGCACCGGCGCCACGGTAAGCGCTGTGGCCAGCAGCACCACCCCCAGCATCACCGCGCGGCCCGTAGCGCCGTACGCCGCGTGCAACAGGCCCGCGTAATACGCCAGAATATTCCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Alternate repeat : GTCGGAAGTTTTGCCTCCATTCCAAGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 12 3182381-3182732 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTH01000001.1 Salisaeta longa DSM 21114 SalloDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 3182381 37 100.0 45 ..................................... CCTATATTAATCGCCTGGTTGATGGCAGGCGATTTAAAATGGAAG 3182463 37 100.0 39 ..................................... GAATGTATGATGAATCTCTGTTCAACAAATTGATTCACA 3182539 37 100.0 41 ..................................... CTGCGGCGGTCGGTGTCGAGTATGTCGTATATCGTCTGCAT 3182617 37 100.0 42 ..................................... GGGGCTTTTTCAATCAAATCATATACTGTGATATACACCATA 3182696 37 91.9 0 ..................................TGG | ========== ====== ====== ====== ===================================== ============================================= ================== 5 37 98.4 42 GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Left flank : CCCATCCGGGCAATCTCCCCATCCGGGCAATCTCCCCATCCGGGCAATCTCCTCAGCCGGGCAATCTCCCCATCCGGGCAATCTCCTCAGCCGGGCAATCTCCTCAGCCGGGCAACCTCCGCAGCCGGGCAACCTCCGCAGCCGGGCAACCCTCCGCGCTAGCCCACCGCAAAAAAAGCGGGCCGCGGCACTTGACATTCTCCAGCCGCTTATATACCCTGCTTTTGCGTGATGTTGAAATCAGTGCTATGCCATTGAATTCAACGCGCGTTGCAGACCTAAAATGTCCGCTCAAGGCGGGGGGTCTGCGACACACGCGCAAGGTGTTCTTTTACATAGGGTTACGCAAAACGCCTTCATGGCGGCTTCACCAAAAGCCATGAAGCAAGCGCATGCTAGAACAGGGTCTGCAGAAATGACGCCTCCGAGCTACCACCAACGGCTTGCAGCGGCCGCAACAGCTGCCTTTCGCACCGGTATTCATCTCTCCTTCAGGTACC # Right flank : GCTTCTGGTGATGACGCCTGACGCACATTTTGCGCAGCACCCTACGTGTACACACGAACGCCTGTCCGCTGCTGCGGGCGGGCGTTTGGTGGTTGGGGGCGTCGCGTGCGTATCTGCTGTGCGGGGTACCCTTTGCAGCGAGCCGTTCGCCTTCGCACATGGAGATCTCACCACAGGCATGACCTCCGGCCCCATCATAGATATGACCTTCGGCCCCCGCGTCACTCCCTTCGGTCGTTCCTCGCGATGACATATTGCTTTTTGCTGCTTTGGTGCGTTGCGCGTGCAGATGGGCACACCACCCCGAACAACCATTTGAACCATCAACGCGCGGCTTTTCGCGCACCCCGCAATGTCATTGCGAGGAGTGAGCGGATGCGAACGACGCGGGGGCCCTTGGGTCATCCTGAAAGCGCAATCTCCGCAAATAGGCAGAAGCGCACCGAGCAAACCCAAAGAACAGATCACCCTTGAAGCCCAGGCTCCGCAGGGTGTCAATT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGTCTTGCCTCCATTCCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //