Array 1 1641518-1639855 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJTK01000001.1 Clostridium perfringens strain TAM-NE43 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1641517 29 100.0 36 ............................. AAAATTTGAATTGATGTAGACTCATCCAACATCTTA 1641452 29 100.0 36 ............................. TGACTTTGAGAATTAACAGGGTCTAAAACATTATCA 1641387 29 100.0 36 ............................. TTTTTATTAGCTAATTAGCTAATTTATTAACACTGG 1641322 29 100.0 37 ............................. ATATTTCATCTATTTCCATTTTTATCCTTAAAGATTC 1641256 29 100.0 36 ............................. GCATTTTAAGATATCTTAATTCTTTATATTTAGATC 1641191 29 100.0 36 ............................. TTTTCCTTAAAACTCTTCTTGCTGTATCATAGCCAT 1641126 29 100.0 36 ............................. AGGGTAACACCCTGGTCAGCAATCAATTGAAGTATC 1641061 29 100.0 37 ............................. TCTCTTTTTAGTAGGTTTTTCAATCAAATTTTCCGAA 1640995 29 100.0 37 ............................. AAAGCCAACGGGGAGGGAAGGCATAAAGCCATTTCCC 1640929 29 100.0 36 ............................. TTTCCCAAGGCAAAGCACCAACATCAGAACCATTAA 1640864 29 100.0 36 ............................. TCATTAAAATATCCTAAGGACATATTTGAAATTACA 1640799 29 100.0 36 ............................. ATTAATTGAATGCTATCTGCACTTTCAACATCGAAG 1640734 29 100.0 37 ............................. GAGCAAAAAAAAGAGTTAGATAAAAGGGAATCTGACT 1640668 29 100.0 35 ............................. TATATTTTCACCAATTCCACCCACAGGCTTATCTA 1640604 29 100.0 37 ............................. CAACATTTCCGAGCTACAGTTCAGGAGCTCCCCACTC 1640538 29 100.0 36 ............................. AAGATTAATAAAAAATTCTTTAAGTGAAGTAGCACT 1640473 29 100.0 37 ............................. TCAGACTTTAGAGTTAGTAAAAATCAGAAGTTAAGCA 1640407 29 100.0 37 ............................. TCTAGAGCATTTATTCTACTTTCTGTACTAGATACTC 1640341 29 100.0 37 ............................. AGTAATTATTTTAACATAAATGAACTAGGGGCTTATG 1640275 29 100.0 36 ............................. TCAGTTTTCTGTCTTTCTTCGACTCCAGTAATTAAA 1640210 29 100.0 36 ............................. CTTAAACAATGACCACAATCAATTAATACTAAAATT 1640145 29 100.0 36 ............................. GAGAAACAATTTTTTCAGACAGCATAACGGTTTCTC 1640080 29 100.0 36 ............................. ACAATATCTTTTACATCATCACCACCATTGAAATGT 1640015 29 96.6 37 .......C..................... TTAGAGAAAATGCAAGGTTTAAATAGAAAAGTTAGAG 1639949 29 96.6 37 .......C..................... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 1639883 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ===================================== ================== 26 29 99.1 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AAACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAACAAAATGAATCAGAAATTGAAGGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAGAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGTAATTATTCAGAGTTAGGATTTACTAGAAACACCAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGTTTTTAGCATTTTAAATTTGGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGAACCTAATGCAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAATAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTAAATCTAATAATCTATGCATTTAGTAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACTAAGTTTTTTCTTAAATACATCATCATCAATTCTAGCAACAACAACCTCATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //