Array 1 914-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAWR01000024.1 Streptococcus agalactiae strain CZ-NI-016 NODE_31_length_932_cov_254.147_ID_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 913 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 847 36 100.0 30 .................................... GTTGATCTTATTCACGTTTCGTGAAGTTTA 781 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 715 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 649 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 583 36 100.0 30 .................................... TTACCGAAAGAGTGGAAAAACTACTCAGTG 517 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 451 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 385 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 319 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 253 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 187 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 121 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 55 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATATAAAAATTTCTACGA # Right flank : CAAGCTAATTCTCATCTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 715-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAWR01000035.1 Streptococcus agalactiae strain CZ-NI-016 NODE_41_length_732_cov_262.019_ID_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 714 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 648 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 582 36 100.0 30 .................................... TTACCGAAAGAGTGGAAAAACTACTCAGTG 516 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 450 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 384 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 318 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 252 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 186 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 120 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 54 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AAGAAAATTTTCTACGA # Right flank : CAAGCTAATTCTCATCTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 319-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAWR01000047.1 Streptococcus agalactiae strain CZ-NI-016 NODE_52_length_337_cov_191.617_ID_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 318 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 252 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 186 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 120 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 54 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CAGGAATCACTCAAAATA # Right flank : CAAGCTAATTCTCATCTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 19-516 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAWR01000010.1 Streptococcus agalactiae strain CZ-NI-016 NODE_19_length_44227_cov_104.125_ID_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 85 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 151 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 217 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 283 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 349 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 415 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 481 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AAGAAAATTTTCTACGAGG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //