Array 1 20816-23014 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPGS01000003.1 Porphyromonas gingivalis strain 381OKJP scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 20816 47 100.0 30 ............................................... TAGGCTGATATAACAATTCCCTCCTCTCCG 20893 47 100.0 30 ............................................... ACGGTAACAATCCCGTAACATATTGGTAAA 20970 47 100.0 30 ............................................... GACATACATCGTCTTTATTCGCATCTTCGT 21047 47 100.0 30 ............................................... AATTTGCAGGTGGCAAAGGACACGCTTGCG 21124 47 100.0 30 ............................................... GACGCCATCGGCCTCCCCTTTATACTGCCC 21201 47 100.0 30 ............................................... TGCCGGTGGCGGAATCGTGCCCGGTAATTC 21278 47 100.0 30 ............................................... GAAACAGGGGCATGGAAAAACATCCCCCTT 21355 47 100.0 30 ............................................... TGGCTGCCCACCTTGATCCGCATCGTTCCA 21432 47 100.0 29 ............................................... AACAGGCGGTCGTCGAACTCTTTTACGAG 21508 47 100.0 30 ............................................... TGCGGATACGGGCTTTCGACCGTTATATTG 21585 47 100.0 30 ............................................... CAGAAGCGTGTATCCCTGCATGCTCTTTTG 21662 47 100.0 30 ............................................... CCAAGGAGCGGGGCGACATCCTTGGTTACC 21739 47 100.0 29 ............................................... GCATTACTATTTAGACCTGCCTCACCCCG 21815 47 100.0 30 ............................................... ATCGAAAGGTCTACAAAATCCGCCATCGCC 21892 47 100.0 30 ............................................... AGAAAATAATTAATAACTACAACAAAAAGA 21969 47 100.0 30 ............................................... GGGAGAAGAACCTGATTATCGCTATTATGC 22046 47 100.0 30 ............................................... AAAATACTATGCCACCGGCGAGTCCGGTGC 22123 47 100.0 30 ............................................... GAGACATCTCCTCTATGCTGCATATGATAA 22200 47 100.0 30 ............................................... ATACTTATTTAGTTTGCGTTTCTTCCGTTG 22277 47 100.0 30 ............................................... TAGTAATCGAGGAGTATTCATCGATTGCGC 22354 47 100.0 30 ............................................... TATCGTTTATTTTCAGATGAAATCTATGAT 22431 47 100.0 30 ............................................... ACATTCCATAAACCATTACGAATTATAAAA 22508 47 100.0 30 ............................................... TGGATCGATATGACAGCTATATACGCGATC 22585 47 100.0 30 ............................................... TATCATCAAATACTTGAAAAATGTGTGATT 22662 47 100.0 30 ............................................... AATACGCAAGCAAGGTCATGTCATATCACT 22739 47 100.0 30 ............................................... AAAAGACTTGTTTAAGCTATTTCTGATATA C [22752] 22817 47 100.0 29 ............................................... AGAGTTTTGAAACTGAAAATATTTTTGAT 22893 46 97.9 30 ............-.................................. TAATGGATAATAATATGAAGATTAGGGATA 22969 46 97.9 0 ............-.................................. | ========== ====== ====== ====== =============================================== ============================== ================== 29 47 99.9 30 GCTGTGCGTTGCCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : GTAATGAGTCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCCATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTTCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGCGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGAGAAATCTCGGCTTTTCAGTTACGCACAGTTGTTTTTTTACTCACAATCACCCTCTATGTCCTGTATTACAGGTGATTACGGGGATTAA # Right flank : TTACCGATTCGGGTTTGAGGTTATCAGCAAAGGGGGAAGGGTATGGGAGGAGCCGTACTTTGCACAAGGGCCATTCCCCGAAAAAAATAAAGGCTGATCGGCAAGGAAACAGGATAACACTCCCCCGTACTCACATCGCCAACCAGCTTTATCTGCCACAAAGATAAACAAAGTTTATGAATCTGCAAGAGCTCAAGAAACTAATCATAAAAGATTTCGCCGGCTGTGCGTTGCAACAACATTACTAAATCTGAAAGCTATTCCCTGTGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAACGATTCCAAATAAGTATCTGTAGAGAGGAGAAAAGCAAGGTAAAAGTGGAGGGAAAAGGAACTGCCATAGATCTAAATTCCACTTAAAACAAGCCGTACAACGATCTGTATATAAAGCGTTTTCAATTTGTATACAAATCGTTTTCATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 50496-49537 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPGS01000004.1 Porphyromonas gingivalis strain 381OKJP scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50495 36 97.2 30 ................A................... TAGACTTTTAACTTCTACAAAAATAATTAA 50429 36 97.2 29 ................A................... AAGTCCTTAACGGATTTACTTCCGTATAG 50364 36 97.2 30 ................A................... AAGGTCTCCAAAGCACCGCTACCGCGCGGA 50298 36 100.0 30 .................................... ACTAATTTTTGAAGGTGCGACCGTTAAAGA 50232 36 100.0 30 .................................... AAAATAGCCAGTTTCTATGATAGATTCTCT 50166 36 100.0 30 .................................... CATGATAAAAGTCTTAATTACATAGAATCA 50100 36 100.0 30 .................................... CATCAGTTACATCTCTAAATATGGTGCTTT 50034 36 100.0 30 .................................... TATTCCGAATTTTTCTCTTTTGATGTCCGC 49968 36 100.0 30 .................................... AAAAAGGCAACAAAAAGTTGCTGATCTCGG 49902 36 100.0 30 .................................... TTATTCTATCATTATTATAAAAGCTCTTTA 49836 36 100.0 30 .................................... TCCGATGAGATGTTGACTAAGCTTACTCTT 49770 36 100.0 30 .................................... CAATTGAGAAAAGCATAGAGACCTCTTTGC 49704 36 100.0 30 .................................... ATTAGCGTTTGCACGTTAATCAAACAGGGT 49638 36 100.0 30 .................................... ACTGTATTGATTCTATATTACTACTTCTTA 49572 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.4 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATTTTGTATACAAATCGTTTTTGATTTATATATAAATCGATTGCGATAAATATATAGATTGCAAGCCGATTTGATATAAATCGGGCAACTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCAAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCGCTCATACAGCAGGTTTGCATCAGCCATACGCAACGCCGGCATAAACCACACAAGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGATACAAATTCGCTGAAGAAGGGAGCACCTCGTTCGCCCGCAAATGTAGTGAAAAAGCCCCAACGCGGAAGAATCCCCACACTACACCCTCCCTCTACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : AACCCCCATCGAATTTGAAACCAATTGAGAAGTCATAATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCATTGCAAACCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCGCTCAAAAGTTCAACGTTCGCTTTTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACGGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //