Array 1 63882-64196 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNDH01000011.1 Nitrosomonas sp. Nm132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 63882 36 100.0 34 .................................... TTGACTGTTTGCGAGGATCCCCATGTGGCCGTAA 63952 36 100.0 33 .................................... ATTGGCTCGTCATCAAAGCTGTAGCGATCTGCC 64021 36 100.0 34 .................................... AGAAAGAAACTGGCGATTTAGCTGAAGATTTGAT 64091 36 100.0 34 .................................... GCTCGGTTATGCCCATCTCTCTGTACTTTTCTGC 64161 36 97.2 0 ................................G... | ========== ====== ====== ====== ==================================== ================================== ================== 5 36 99.4 34 GTAGCAACACAGCCCTGATTTAAAAGGGATTGAGAC # Left flank : ATACGCTACCGGAGCACATCACCTTGCAGTTCGAGACGCCGCTCAGATTGCAGCACGAAGGCCACGCCCTGCCTCCCGCCAAAGTCAGTGCACGCGCCCTGCTCATGGCGCTGGTCCGCCGGGCGAGCTTGCTGGCCGAGATCCATGACGGCAAACCGCTCTATACTGCGGGTAAATTTTCCAGAATGACGGAGATTGCGAATCAGATTGAAAGCAAACATAATCTGACATGGCGTGACTGGACACGGCATTCATCGCGCCAGCAGCGTACCATGCAACTGGGCGGCTGCATCGGCAACTGGCAACTGCGCGGTAATCTTGCGCCATTCCATGATGCACTGCGCCTGGGATCATGGCTGCATGTCGGCAAGGAAACCAGCTTCGGGCTAGGAAAATATCGTATTCTGATGGAACACGGAACATAACTATGACGCACCTGAAAAATCTTGTGAATGCCCCTGATAATCATTTGATCGGAAAGGGAAAAATGACAGTAATGA # Right flank : CACAGAAGAAATCGAAATATCGGCAAGCTTGCCAGTCAGTATGTTTCCGCGGTTTCTCTTTACACTGGCAATCAGGTTGAACAATGGATCAATACTCATGAGCCGTTCGGTTTATTTGATTTGTTATGACGTCTGCTGCCCACGCCGGCTAAGGCAAGTTCACCAGTTTCTGCTGGGCTACAAGACGGGCGGACAGAAATCTTTTTTTGAATGCTGGCTGACGCCGCAAGAGCTGCGGGCGGTAAGAGTGCGTCTGGTTGAGTTGATCGATCAGACGGAGGATCGCGTTCATATCTTTCAGCTCGATCCGCGCATGAAGCCGGATTGCTTTGGTGTTGCGGTCACTATGACAGTGAACACCCCCTTTATTATTGCCTAGGAGGATACCTTGACGAGTCTTTATGTTGACCGGCGCGGAGTTGAACTGGAAGTGGATGGAGAAGCACTGGTTTTTCGTGAGAATGGCTTGAGAACTGGCACGGTGCCGATGGCGCCGCTGT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACACAGCCCTGATTTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 43737-40948 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNDH01000003.1 Nitrosomonas sp. Nm132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43736 28 100.0 32 ............................ TGAGACAAAGATGATTGGTTTGTCGGTTTCAA 43676 28 100.0 32 ............................ GATCAAGGCCGCAACGATGGCTCTACGTCTCG 43616 28 100.0 32 ............................ ACTGATTCATCGATATCGATAATTCTCTGTTT 43556 28 100.0 32 ............................ AAAATGGATGGCCCGGGAGATCGCTTTAATCA 43496 28 100.0 32 ............................ GCTAGACATCGCCATTCCTGCGCTCTTAAGCA 43436 28 100.0 32 ............................ TCTTTCGGAATCGGGCTTTTTGATAAATGCCA 43376 28 100.0 32 ............................ AAATACGTAATCAAAGGTTGGTACAATGTTCC 43316 28 100.0 32 ............................ TCTTAAAATCGGTATCCGCTCAGATCAGACGT 43256 28 100.0 32 ............................ AAATATCGTTTGTCACACGGGCCTATATTTAT 43196 28 100.0 32 ............................ GTACATAAAAGAATTATTAAACAATTGGAGGA 43136 28 100.0 33 ............................ TTTGATAAAATTGGTATGCTAATTGTTTAATTT 43075 28 100.0 32 ............................ TTGCAGGTGGCATCTCAATAGAAGATGTTCCG 43015 28 100.0 32 ............................ TTTTAAAATATCCCAGGGTGTCGGCATAAATC 42955 28 100.0 32 ............................ TTGAAGATTTACGGCAAAAGACGGGGGGAAGT 42895 28 100.0 32 ............................ TGACTACTCATTACTAAAATCCAAAATCCAGG 42835 28 100.0 32 ............................ TCATAACCAACTTCTAAGCATTTTCGCTCATA 42775 28 100.0 32 ............................ TTTCATTCTTAGGTATTTGATCAATCGCCCAC 42715 28 100.0 32 ............................ TGTTAAACGTAACTAGGATGCCGAAGCGCGGA 42655 28 100.0 32 ............................ TCAATGGGATATCAATCTTCTTAAATCTGATA 42595 28 100.0 32 ............................ ACCAGATTCTTCAACCACCGCATCGCGTAGAT 42535 28 100.0 32 ............................ AGATTGTAAACGCTTTCGCCCTAGCTTTTAGC 42475 28 100.0 32 ............................ CATTAATGATACAGCCCGGACATTGGTATCAT 42415 28 100.0 32 ............................ TTTATTGATCGGAGAATATGATGACTATTCGC 42355 28 100.0 32 ............................ AACACAGCATCCGACAAGGCAGCGTAAACAGA 42295 28 100.0 32 ............................ AGTCAAAGTCCACGTTATGACCGACCAGGTAT 42235 28 100.0 32 ............................ ATTGCTAAGACCCGAAGAGATTTGGTCTACCA 42175 28 100.0 32 ............................ AGTTGGAAATGATCCTGATAAATCTTTCGCCC 42115 28 100.0 32 ............................ AAAGAAATAGCGCGATCTATATTAAGCAGATT 42055 28 100.0 32 ............................ ACTCGCGCGCTTTATTGTAGATGTGACTGAAT 41995 28 100.0 32 ............................ AAAGAAGTGAGCGAGGCCATCCGGCGAAAAGC 41935 28 100.0 32 ............................ GGCTGCCGCATTCATTGCGAGCGTTGCGCTGT 41875 28 100.0 32 ............................ ATGCGCGATGCTCAGCAAGAGATAAAGCGGCA 41815 28 100.0 32 ............................ AGTGACTAAAAATGGTTTTCCGCGCAGCGTGC 41755 28 100.0 32 ............................ AAAGAAGTGGGCGAGGCCATCCGGCGAAAAGC 41695 28 100.0 32 ............................ GCATGACGAGTACCCTGCATCCAGGGCGTCTC 41635 28 100.0 32 ............................ TACGACTCCGTAGCCGTTGCTGTGTGTGGATT 41575 28 100.0 32 ............................ TGACAAAGCAGTAGAACCAACGACCATTAGTT 41515 28 100.0 32 ............................ AATTATCATTATCCAGTGGTAACTATGAGATA 41455 28 100.0 32 ............................ AGTGATAATGAGTCGCTGGCACTTCTCAGATT 41395 28 100.0 32 ............................ AGTCGCTATTGCCGCGCACAGCGTGGTAGGCG 41335 28 100.0 32 ............................ AGCTGCTGCAGCAATGATTTCAGCTCGGGATC 41275 28 100.0 32 ............................ GATACTGAGATAAACATGCTGGATTTCACTAG 41215 28 92.9 32 ...T.............T.......... GGTCGAATATCGGCTTAGAGCGCGCCCGGAAA 41155 28 96.4 32 .................T.......... ATAGGAAAGACGATGGCGTATACAATTCCGAT 41095 28 96.4 32 .................T.......... GGGAAGAAGGCGACGCTATTAATGATGACAAC 41035 28 100.0 32 ............................ GCTCACACGCCCAATGTAAAGTTCTTTACTCA 40975 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.7 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTGAAACCGTTTTTTCTCATCACTCTAAAATCGATTTTGTTGCCAATGCAAAAGTGCTGGGTTATGAAATTGTGCTTGTCTTTATTCACCTTGAACAGACACAACTCAACCTCGCGCGTATTGCGCAGCGGATGAGCGAAGGCGGCCATGCTGTGCCGGATGAAAAAGTTAAGGCGCGAATACCCAGAGTATTGCAATTGGTTAAGCAGGTTTTACCGCTATGTGATCAAGCATACATCCTGGACAACTCTCGGGCGGATAGCCCGTTTCAGCAAATAGCGGTAATACGCAACGGATGTCTTGAGTTAAAGCGAGTATCGATTCCAGAATGGTGTGAGGAATTGCTGTCAGATTATCTGTGATTTTTATACCTATTTTTTTCGTTCTTTAATAATTTACAAAGAATCAGTTACTTATTAATTACTGAAAAATTATTAGGTATTTTGTTCATTTCACATTAAACGATTGTTGTTTATAGTTTTTTGAGTGTTATACTCCA # Right flank : TTGCATATATGCGTGCCTTTGCCAAAGCGTGGCCGGATAGTGAATTTGTGCAAGCGGTGCTTGCACAATTGCCTTGGTATCACCAGTGATGTGCTGAACTTATCGGAAGATAATCAGATTCTCGTAATCGAAGATATATTACCTTCTATCGTAATTTCCATTAAACAGGTATAAGAATGAATAAAGCAAATGAAATTTTCTTTTTGGTCGAGGGAACATCTGAAGGCGGCTATACCGCCCGTGCGCTGGGTGAATCGATTTTTACCGAGGCGGATGATCTTGCCAGTTTGCATCAGCAAGTGCGCGATGCCGTGCATTGTCATTTTGATGAAGGTAAGGTGCCGGAAATGATTCGCCTTCATTTCGTAAGTGTTGATTCTGTTGTCGTAGGTAGCGCCCAGTAGCCATCCTAGGTGAAGCTCAAAATGATCTGTATGAGGATACTCCTGCAGTATTAAGGTAGTTTTTGTCTGGCTTCGGATCACGGCATGCCGCGCTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //