Array 1 17655-17946 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================== ================== 17655 27 75.0 114 ..G.....T.TTG.-..A.......... GTAGTGAAAGGGCGGCAACAACATTCCCCGCGTTAGCGGGGTACCTTAATAGGTGGCTCGACGAAGTTGGCTCCTTAACCCTTTCGATTGGTGCAGCGTTGCTGGTCGCGAAGG T [17660] 17797 28 100.0 33 ............................ TTTTGCCGAGGCCGCCCGCGGCGCCTGGGATAC 17858 28 100.0 33 ............................ CCGGTCGCCGCGCGCCGGGTCATCATCGAGAAG 17919 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================================================================================== ================== 4 28 93.8 60 GTCTGCCCCGCACTCGCGGGGATGAGCC # Left flank : TGAAAGGAGGTGCCTGAACTCGGGTTTCATGTCGAGCTGACTCAGGAAAGTAAGGGTCGCCTTGCCGAGGTCGTGATTTCCAGCGAGCCAAATGTAGAGGCGTCGGACTTCCTCAACGGATAGGTTCAAGTTCTGTGCAAGATTCTCTTTGAGGGAATCCGACACCCAGGTGTCATAAACCGCAGCAGCGGTGCAGGCGGAGTCGATTAGATGCTGGGCCAAGCTGAGGTAGCCGGTTTCGTCGCCAGACTTCGCCCACAGCGACCGCGCTTGCGGGCTAAGCCCATCGACGAACGAATCAATCGATGCTTCGAAATGATCTTGGCGACGAGCCGTGTCTGCCATGTTTGTCACCTCCATGTTTGTCATGTGAATTCCAAGAGAACTGCTGTTAGTTCGAGAGCGTAGCAGAAGTTTGGGGGATCTGTATCCCGAATGCCCACCTTCCACTAATTGGATCGAGCGAGATATGGATGAGAAGCAGATGCACTAAGATCCGC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCCGCACTCGCGGGGATGAGCCCTACCGGAGCCGTAAAGCCACACCCTCGCTCTAGTCTGCCCCGCACTCGCGGGGATGAGCCCGGGCGCGTCACACCACCGCTAGTCGACGGGCGGTCTGCCCCGCACTCGCGGGGATGAGCCCTGCGCGCCCTGTCCGAGCAGGCGGGCAACACCGTCTGCCCCGCACTCGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCGCGCCGAGCGCATTCGCAAAGGCGATACGCCCGTCTGCCCCGCACTCGCGGGGATGAGCCCTTC # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18045-18256 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18045 29 93.1 32 NN........................... TACCGGAGCCGTAAAGCCACACCCTCGCTCTA 18106 29 100.0 32 ............................. GGGCGCGTCACACCACCGCTAGTCGACGGGCG 18167 29 100.0 32 ............................. TGCGCGCCCTGTCCGAGCAGGCGGGCAACACC 18228 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTCTGCCCCGCACTCGCGGGGATGAGCCC # Left flank : GTTAGTTCGAGAGCGTAGCAGAAGTTTGGGGGATCTGTATCCCGAATGCCCACCTTCCACTAATTGGATCGAGCGAGATATGGATGAGAAGCAGATGCACTAAGATCCGCGTGTGTCCCTGTTGTGCAGGGATGAGCCGTAGTGAAAGGGCGGCAACAACATTCCCCGCGTTAGCGGGGTACCTTAATAGGTGGCTCGACGAAGTTGGCTCCTTAACCCTTTCGATTGGTGCAGCGTTGCTGGTCGCGAAGGGTCTGCCCCGCACTCGCGGGGATGAGCCTTTTGCCGAGGCCGCCCGCGGCGCCTGGGATACGTCTGCCCCGCACTCGCGGGGATGAGCCCCGGTCGCCGCGCGCCGGGTCATCATCGAGAAGGTCTGCCCCGCACTCGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCGCGCCGAGCGCATTCGCAAAGGCGATACGCCCGTCTGCCCCGCACTCGCGGGGATGAGCCCTTCGACTGAGCATCAGACAGCTCCTCAGCAGAGTCTGCCCCGCACTCGCGGGGATGAGCCCAGGAAGCGCGCTACACCCCAGAAACGGCCCGCGTCTGCCCCGCACTCGCGGGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTCTGCCCCGCACTCGCGGGGATGAGCCGAGGTCAAGCCGCTTGGCAGTGGCCAAAAGCGCGTCTGCCCCGCACTCGCGGGGATGAGCCGTCTG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18353-18502 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18353 28 96.4 33 N........................... CGCGCCGAGCGCATTCGCAAAGGCGATACGCCC 18414 28 100.0 33 ............................ CTTCGACTGAGCATCAGACAGCTCCTCAGCAGA 18475 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 98.8 34 GTCTGCCCCGCACTCGCGGGGATGAGCC # Left flank : GATACGTCTGCCCCGCACTCGCGGGGATGAGCCCCGGTCGCCGCGCGCCGGGTCATCATCGAGAAGGTCTGCCCCGCACTCGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCCGCACTCGCGGGGATGAGCCCTACCGGAGCCGTAAAGCCACACCCTCGCTCTAGTCTGCCCCGCACTCGCGGGGATGAGCCCGGGCGCGTCACACCACCGCTAGTCGACGGGCGGTCTGCCCCGCACTCGCGGGGATGAGCCCTGCGCGCCCTGTCCGAGCAGGCGGGCAACACCGTCTGCCCCGCACTCGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCAGGAAGCGCGCTACACCCCAGAAACGGCCCGCGTCTGCCCCGCACTCGCGGGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTCTGCCCCGCACTCGCGGGGATGAGCCGAGGTCAAGCCGCTTGGCAGTGGCCAAAAGCGCGTCTGCCCCGCACTCGCGGGGATGAGCCGTCTGCGGGTGTCTGGGAATCCGACTTCTGAGGGTCTGCCCCGCACTCGCGGGGATGAGCCGTCGTGCCCGGCATACTCGCGGCTTCCTCTGCGGTCTGCCCCGCACTCGCGGGGATGAGCCCTCGGCCATGCCGGCGACACGAAAAACCACCGCGTCTGCCCCGCACTCGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 18662-18934 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18662 29 100.0 32 ............................. AGGTCAAGCCGCTTGGCAGTGGCCAAAAGCGC 18723 29 100.0 32 ............................. TCTGCGGGTGTCTGGGAATCCGACTTCTGAGG 18784 29 100.0 32 ............................. TCGTGCCCGGCATACTCGCGGCTTCCTCTGCG 18845 29 96.6 32 ............................C TCGGCCATGCCGGCGACACGAAAAACCACCGC 18906 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTCTGCCCCGCACTCGCGGGGATGAGCCG # Left flank : GGGCGGTCTGCCCCGCACTCGCGGGGATGAGCCCTGCGCGCCCTGTCCGAGCAGGCGGGCAACACCGTCTGCCCCGCACTCGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCGCGCCGAGCGCATTCGCAAAGGCGATACGCCCGTCTGCCCCGCACTCGCGGGGATGAGCCCTTCGACTGAGCATCAGACAGCTCCTCAGCAGAGTCTGCCCCGCACTCGCGGGGATGAGCCCAGGAAGCGCGCTACACCCCAGAAACGGCCCGCGTCTGCCCCGCACTCGCGGGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCGCACTCGCGGGGATGAGCCCAATTCCTCACCTACTGGCTCACTCCAGGACGGGTCTGCCCCGCACTCGCGGGGATGAGCCCCGTAAACCCTTTTCCCGCGCCAGGCCTTTCGCGTCTGCCCCGCACTCGCGGGGATGAGCCGGTGGCCAGTCGACGGTAAAGGTGGGATCAGTAGTCTGCCCCGCACTCGCGGGGATGAGCCGTTCAAGAGTACTCACCCGGAAGGGAACGATAAGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCTGCCCCGCACTCGCGGGGATGAGCCTATG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 19090-19300 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19090 28 100.0 33 ............................ CCGTAAACCCTTTTCCCGCGCCAGGCCTTTCGC 19151 28 100.0 33 ............................ GGTGGCCAGTCGACGGTAAAGGTGGGATCAGTA 19212 28 100.0 33 ............................ GTTCAAGAGTACTCACCCGGAAGGGAACGATAA 19273 28 96.4 0 ...........................N | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTCTGCCCCGCACTCGCGGGGATGAGCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTCTGCCCCGCACTCGCGGGGATGAGCCGAGGTCAAGCCGCTTGGCAGTGGCCAAAAGCGCGTCTGCCCCGCACTCGCGGGGATGAGCCGTCTGCGGGTGTCTGGGAATCCGACTTCTGAGGGTCTGCCCCGCACTCGCGGGGATGAGCCGTCGTGCCCGGCATACTCGCGGCTTCCTCTGCGGTCTGCCCCGCACTCGCGGGGATGAGCCCTCGGCCATGCCGGCGACACGAAAAACCACCGCGTCTGCCCCGCACTCGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCGCACTCGCGGGGATGAGCCCAATTCCTCACCTACTGGCTCACTCCAGGACGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCTGCCCCGCACTCGCGGGGATGAGCCTATGTGGACCCGCTGGCGCGCCGGTGGAGTTTGGTCTGCCCCGCACTCGCGGGGATGAGCCCCAGCCGGAACCTGACCACCAACCACAGCCCGCGTCTGCCCCGCACTCGCGGGGATGAGCGCTCGCGCTCCTCCGCAGACAGGTCACCCATGGCGTCTGCCCCGCACTCGCGGGGATGAGCCCTTATCGAACGACGGCAAAACGGGAACATAGGCGTCTGCCCCGCACTCGCGGGGATGAGCCCCAGGGTACGAGCAACCAGCGAGAACGCATCAAGTCTGCCCCGCACTCGCGGGGATGAGCCCCTGCGGAGGATGCGCAAAAGCCCGCCGATGGTGTCTGCCCCGCACTCGCGGGGATGAGCCCGAC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 19402-20222 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19402 28 100.0 33 ............................ TATGTGGACCCGCTGGCGCGCCGGTGGAGTTTG 19463 28 100.0 33 ............................ CCAGCCGGAACCTGACCACCAACCACAGCCCGC 19524 28 96.4 33 ...........................G CTCGCGCTCCTCCGCAGACAGGTCACCCATGGC 19585 28 100.0 33 ............................ CTTATCGAACGACGGCAAAACGGGAACATAGGC 19646 28 100.0 33 ............................ CCAGGGTACGAGCAACCAGCGAGAACGCATCAA 19707 28 100.0 33 ............................ CCTGCGGAGGATGCGCAAAAGCCCGCCGATGGT 19768 28 100.0 33 ............................ CGACGCGCTTCCATTCTCGAATATCGCCACCTT 19829 28 100.0 33 ............................ GTCGCCCGTTTGCCGGAGCGTGTTTGGCCTGGT 19890 28 100.0 33 ............................ GGACACCCAATGCCCGTAATCGTGATCGCCACC 19951 28 100.0 33 ............................ GTTCCAGTCCCATCCCTAAATGTGGAGCCATTT 20012 28 100.0 33 ............................ TTCCCCGCCATTGTTGGTGTGTGCGTAAGCACT 20073 28 100.0 33 ............................ CACTTCGGCGCCGTCGGCGAGACCGATGGTGTC 20134 28 100.0 33 ............................ CGCCGGCGACCTTGTGGGCACCGCCGAGGATCG 20195 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 33 GTCTGCCCCGCACTCGCGGGGATGAGCC # Left flank : CCGCGTCTGCCCCGCACTCGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCGCACTCGCGGGGATGAGCCCAATTCCTCACCTACTGGCTCACTCCAGGACGGGTCTGCCCCGCACTCGCGGGGATGAGCCCCGTAAACCCTTTTCCCGCGCCAGGCCTTTCGCGTCTGCCCCGCACTCGCGGGGATGAGCCGGTGGCCAGTCGACGGTAAAGGTGGGATCAGTAGTCTGCCCCGCACTCGCGGGGATGAGCCGTTCAAGAGTACTCACCCGGAAGGGAACGATAAGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT # Right flank : CCCCATGGCTCACACGATGAAGCCGCGCTACACCTGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCCCTCGACGGGCTTGACCCCGCCGACTATCCGCGTCTGCCCCGCACTCGCGGGGATGAGCCGGTGCCGGCGATTCTGGGTATCTCGCGGTTTAAGTCTGCCCCGCACTCGCGGGGATGAGCCCTTGGCGGTGTAATCCTCGTTGAGTTCCCGCACGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGCACTCGCGGGGATGAGCCCAGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 7 20444-20593 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20444 28 100.0 33 ............................ GGTGCCGGCGATTCTGGGTATCTCGCGGTTTAA 20505 28 100.0 33 ............................ CTTGGCGGTGTAATCCTCGTTGAGTTCCCGCAC 20566 28 96.4 0 ...........................N | ========== ====== ====== ====== ============================ ================================= ================== 3 28 98.8 34 GTCTGCCCCGCACTCGCGGGGATGAGCC # Left flank : CGCCACCGTCTGCCCCGCACTCGCGGGGATGAGCCGTTCCAGTCCCATCCCTAAATGTGGAGCCATTTGTCTGCCCCGCACTCGCGGGGATGAGCCTTCCCCGCCATTGTTGGTGTGTGCGTAAGCACTGTCTGCCCCGCACTCGCGGGGATGAGCCCACTTCGGCGCCGTCGGCGAGACCGATGGTGTCGTCTGCCCCGCACTCGCGGGGATGAGCCCGCCGGCGACCTTGTGGGCACCGCCGAGGATCGGTCTGCCCCGCACTCGCGGGGATGAGCCCCCATGGCTCACACGATGAAGCCGCGCTACACCTGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCCCTCGACGGGCTTGACCCCGCCGACTATCCGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGCACTCGCGGGGATGAGCCCAGTTGATTACGTCCGACCTTGATGTTCGGGTCGTCTGCCCCGCACTCGCGGGGATGAGCCCACATCACCTCCACGGCTCACGCATCGGCACCGGCGCCACCAACGTCGGTCTGCCCCGCACTCGCGGGGATGAGCCCCGCGTCATGGCACTCGTCGAACTCGGCTACGTGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCCCCACGAAAGCCACCCGCATCAAGGGGCACCGTCTGCCCCGCACTCGCGGG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 20750-20914 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 20750 28 100.0 48 ............................ CACATCACCTCCACGGCTCACGCATCGGCACCGGCGCCACCAACGTCG 20826 28 100.0 33 ............................ CCGCGTCATGGCACTCGTCGAACTCGGCTACGT 20887 28 96.4 0 ...........................N | ========== ====== ====== ====== ============================ ================================================ ================== 3 28 98.8 41 GTCTGCCCCGCACTCGCGGGGATGAGCC # Left flank : TACACCTGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCCCTCGACGGGCTTGACCCCGCCGACTATCCGCGTCTGCCCCGCACTCGCGGGGATGAGCCGGTGCCGGCGATTCTGGGTATCTCGCGGTTTAAGTCTGCCCCGCACTCGCGGGGATGAGCCCTTGGCGGTGTAATCCTCGTTGAGTTCCCGCACGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGCACTCGCGGGGATGAGCCCAGTTGATTACGTCCGACCTTGATGTTCGGGTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCCCCACGAAAGCCACCCGCATCAAGGGGCACCGTCTGCCCCGCACTCGCGGGGATGAGCCGGGCGGGCACGAACGGATTGTTCCGTGCCCGCCGTCTGCCCCGCACTCGCGGGGATGAGCCCACCGAAGTCCCTCTCGACAACATCGAGTGGTCGTCTGCCCCGCACTCGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCACGTCGGCACGCATGGCCGAACTCATCACGTTCGGCCTGTCTCCACTCATGTCGGCGGTTGCGGC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 21013-21222 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21013 28 96.4 32 N........................... CCCCACGAAAGCCACCCGCATCAAGGGGCACC 21073 28 100.0 33 ............................ GGGCGGGCACGAACGGATTGTTCCGTGCCCGCC 21134 28 100.0 33 ............................ CACCGAAGTCCCTCTCGACAACATCGAGTGGTC 21195 28 92.9 0 ..........................NN | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GTCTGCCCCGCACTCGCGGGGATGAGCC # Left flank : CGCACTCGCGGGGATGAGCCCTTGGCGGTGTAATCCTCGTTGAGTTCCCGCACGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGCACTCGCGGGGATGAGCCCAGTTGATTACGTCCGACCTTGATGTTCGGGTCGTCTGCCCCGCACTCGCGGGGATGAGCCCACATCACCTCCACGGCTCACGCATCGGCACCGGCGCCACCAACGTCGGTCTGCCCCGCACTCGCGGGGATGAGCCCCGCGTCATGGCACTCGTCGAACTCGGCTACGTGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCACGTCGGCACGCATGGCCGAACTCATCACGTTCGGCCTGTCTCCACTCATGTCGGCGGTTGCGGCGCGTTTGTCGCAAGAGTCTGCCCCGCACTCGCGGGGATGAGCCCGCTAAGAAGGGCGGCACGACCAGCCCCGATGTGTCTGCCCCGCACTCGCGGGGATGAGCACTGCCGCACTGCTCACCCTCGCGGTGGTGCTCAGTCTGCCCCGCACTCGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCGCACTCGCGGGGATGAGCCGGTGGTTCCCCAGGCGGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 21429-21578 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21429 28 100.0 33 ............................ CGCTAAGAAGGGCGGCACGACCAGCCCCGATGT 21490 28 96.4 33 ...........................A CTGCCGCACTGCTCACCCTCGCGGTGGTGCTCA 21551 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 98.8 34 GTCTGCCCCGCACTCGCGGGGATGAGCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCCCCACGAAAGCCACCCGCATCAAGGGGCACCGTCTGCCCCGCACTCGCGGGGATGAGCCGGGCGGGCACGAACGGATTGTTCCGTGCCCGCCGTCTGCCCCGCACTCGCGGGGATGAGCCCACCGAAGTCCCTCTCGACAACATCGAGTGGTCGTCTGCCCCGCACTCGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCACGTCGGCACGCATGGCCGAACTCATCACGTTCGGCCTGTCTCCACTCATGTCGGCGGTTGCGGCGCGTTTGTCGCAAGA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCGCACTCGCGGGGATGAGCCGGTGGTTCCCCAGGCGGCAATGCCGGAGTCGTCGTCTGCCCCGCACTCGCGGGGATGAGCCCAACCTGCCGCGGCTGTCACGCCCAACTCAAGCGTCTGCCCCGCACTCGCGGGGATGAGCCGCAATGATCTGCGACCTTGGGTTTAGTTCATTTGTCTGCCCCGCACTCGCGGGGATGAGCCCACCTTGCGTCGCCGGACACTATCGCGCCCCCAGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCCGCACTCGCGGGGATGAGCCCTACA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 21737-21947 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21737 28 100.0 33 ............................ CAACCTGCCGCGGCTGTCACGCCCAACTCAAGC 21798 28 100.0 33 ............................ GCAATGATCTGCGACCTTGGGTTTAGTTCATTT 21859 28 100.0 33 ............................ CACCTTGCGTCGCCGGACACTATCGCGCCCCCA 21920 28 96.4 0 ...........................N | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTCTGCCCCGCACTCGCGGGGATGAGCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCACGTCGGCACGCATGGCCGAACTCATCACGTTCGGCCTGTCTCCACTCATGTCGGCGGTTGCGGCGCGTTTGTCGCAAGAGTCTGCCCCGCACTCGCGGGGATGAGCCCGCTAAGAAGGGCGGCACGACCAGCCCCGATGTGTCTGCCCCGCACTCGCGGGGATGAGCACTGCCGCACTGCTCACCCTCGCGGTGGTGCTCAGTCTGCCCCGCACTCGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCGCACTCGCGGGGATGAGCCGGTGGTTCCCCAGGCGGCAATGCCGGAGTCGTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCCGCACTCGCGGGGATGAGCCCTACACCCAGCACCCAGAGGGTGACCACATCGAGTCTGCCCCGCACTCGCGGGGATGAGCCCTCACGCTCGAATGGTGCACACGCGGAGATGGAGTCTGCCCCGCACTCGCGGGGATGAGCCGTAGGACCCAGGTGGGAGATAGAGCCTGCCCAAGTCTGCCCCGCACTCGCGGGGATGAGCCCAGTTGCACACCCACACCGCCACGGTGCATGACGTCTGCCCCGCACTCGCGGGGATGAGCCCTACGCCACCCTGCGGTATGCAGTAGACCTCCTGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 22045-22317 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22045 29 93.1 32 NN........................... TACACCCAGCACCCAGAGGGTGACCACATCGA 22106 29 100.0 32 ............................. TCACGCTCGAATGGTGCACACGCGGAGATGGA 22167 29 96.6 32 ............................G TAGGACCCAGGTGGGAGATAGAGCCTGCCCAA 22228 29 100.0 32 ............................. AGTTGCACACCCACACCGCCACGGTGCATGAC 22289 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTCTGCCCCGCACTCGCGGGGATGAGCCC # Left flank : TGCTCAGTCTGCCCCGCACTCGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCGCACTCGCGGGGATGAGCCGGTGGTTCCCCAGGCGGCAATGCCGGAGTCGTCGTCTGCCCCGCACTCGCGGGGATGAGCCCAACCTGCCGCGGCTGTCACGCCCAACTCAAGCGTCTGCCCCGCACTCGCGGGGATGAGCCGCAATGATCTGCGACCTTGGGTTTAGTTCATTTGTCTGCCCCGCACTCGCGGGGATGAGCCCACCTTGCGTCGCCGGACACTATCGCGCCCCCAGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTACGCCACCCTGCGGTATGCAGTAGACCTCCTGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCGAATCTGGGCCGACATCACCGACCAGGTACGCGTCTGCCCCGCACTCGCGGGGATGAGCCCCCGGCGAGCGCCCACACCACATCAGAAACCGTGTCTGCCCCGCACTCGCGGGGATGAGCCCACCCCCACCGGGTGCGGTCAGGGGTTATTCGGGTCTGCCCCGCACTCGCGGGGATGAGCCCTGCGGGACGAGAGTGTGTCGCCGGTTCGACACGTCTGCCCCGCACTCGCGGGGATGAGCCCCGGCGCGCAAGCCTGCAGCGCGAGGGGGACTGGTCTGCCCCGCACTCGCGGGGATGAGCCTGAGGCGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 22537-22869 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22537 28 100.0 33 ............................ CCCGGCGAGCGCCCACACCACATCAGAAACCGT 22598 28 100.0 33 ............................ CACCCCCACCGGGTGCGGTCAGGGGTTATTCGG 22659 28 100.0 33 ............................ CTGCGGGACGAGAGTGTGTCGCCGGTTCGACAC 22720 28 100.0 33 ............................ CCGGCGCGCAAGCCTGCAGCGCGAGGGGGACTG 22781 28 100.0 33 ............................ TGAGGCGGAGGGGTTTCGGCGGTCGTCGTTTTC 22842 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCTGCCCCGCACTCGCGGGGATGAGCC # Left flank : NNNNNNNNNNCTGCCCCGCACTCGCGGGGATGAGCCCTACACCCAGCACCCAGAGGGTGACCACATCGAGTCTGCCCCGCACTCGCGGGGATGAGCCCTCACGCTCGAATGGTGCACACGCGGAGATGGAGTCTGCCCCGCACTCGCGGGGATGAGCCGTAGGACCCAGGTGGGAGATAGAGCCTGCCCAAGTCTGCCCCGCACTCGCGGGGATGAGCCCAGTTGCACACCCACACCGCCACGGTGCATGACGTCTGCCCCGCACTCGCGGGGATGAGCCCTACGCCACCCTGCGGTATGCAGTAGACCTCCTGTCTGCCCCGCACTCGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCGAATCTGGGCCGACATCACCGACCAGGTACGC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCCGCACTCGCGGGGATGAGCCCTCGACGGCCCTACCATCACCACGTGGATTGACGTCTGCCCCGCACTCGCGGGGATGAGCCCGAGGCACCCATGACCGAGGAACAGGTCGACCGGTTTGCCCTGCACTCGCGGGGATGAGCCCTCGCTCATCGGTGCGCTGCGCTCTACCTACTCGTCTGCCCCGCACCTGCGGGGATGAGCCTTCCGGCGGCTCCGCAGCCGAGAACAGGTCACCGTCTGCCCCGCACCCGCGGGGATGAGCTGGTGAGACGGGTGGTGTTGGGGTGTGGCTTCGTCGAGAAGCAACGCCCCACAGAGAACTAACTCCCTAGTGCCCCTCAACACCCCAGTAAGCAACAAACGACGAAACCGGAAGCAGCCTCCCTGCTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 22968-23240 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV833345.1 Corynebacterium sp. HMSC070H05 Scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22968 29 93.1 32 NN........................... TCGACGGCCCTACCATCACCACGTGGATTGAC 23029 29 100.0 32 ............................. GAGGCACCCATGACCGAGGAACAGGTCGACCG 23090 29 93.1 32 ..T.....T.................... TCGCTCATCGGTGCGCTGCGCTCTACCTACTC 23151 29 89.7 32 .............CT.............T TCCGGCGGCTCCGCAGCCGAGAACAGGTCACC 23212 29 89.7 0 .............C.............TG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTCTGCCCCGCACTCGCGGGGATGAGCCC # Left flank : NNNNNNNNNTCTGCCCCGCACTCGCGGGGATGAGCCCGAATCTGGGCCGACATCACCGACCAGGTACGCGTCTGCCCCGCACTCGCGGGGATGAGCCCCCGGCGAGCGCCCACACCACATCAGAAACCGTGTCTGCCCCGCACTCGCGGGGATGAGCCCACCCCCACCGGGTGCGGTCAGGGGTTATTCGGGTCTGCCCCGCACTCGCGGGGATGAGCCCTGCGGGACGAGAGTGTGTCGCCGGTTCGACACGTCTGCCCCGCACTCGCGGGGATGAGCCCCGGCGCGCAAGCCTGCAGCGCGAGGGGGACTGGTCTGCCCCGCACTCGCGGGGATGAGCCTGAGGCGGAGGGGTTTCGGCGGTCGTCGTTTTCGTCTGCCCCGCACTCGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGTGAGACGGGTGGTGTTGGGGTGTGGCTTCGTCGAGAAGCAACGCCCCACAGAGAACTAACTCCCTAGTGCCCCTCAACACCCCAGTAAGCAACAAACGACGAAACCGGAAGCAGCCTCCCTGCTTCCGGTTTCGCACGACGCAATCTACGACAGTTCCATCCAGATGGTCTTCAGGTTGGTGTACTGCTCCATCGCTTCGAAGCCGTTGTCCTTGCCGCCGAAGCCGGAGTGCTTGTAGCCGCCGAACGGCGTGCGGATGTCCCCCTCACTGTAACCATTGACGGCGATGGTGCCGGCCTGGAATGCGCGCGACATGCGCATGACCTGGCTGAGGTCCTTCGACCAGACGGTGCCGGCGAGGCCGTACTTGGTGCCGTTGGCTAGGCGGATTGCCTCGTCTTCGTCGTCAAACTCAAGCACTACCGTGACTGGGCCGAAGATCTCTTCCTGCGCGACTGCAGAGGTAGCGGGGAGGTCGGTGATCACGGTCGGGGCGA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACTCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //