Array 1 22890-15255 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMS01000001.1 Methanohalophilus euhalobius strain WG1_MB Ga0205985_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 22889 30 100.0 37 .............................. GAACTCTTGAGAGTTCATTGACGTCAGCCTTCTCAAT 22822 30 100.0 36 .............................. CACAGTTTGCAGAACTTGACGGCAGCGTATTGTCAA 22756 30 100.0 38 .............................. TTCTCTCACCTCATATTCGAATACTTGTTACACTGATA 22688 30 100.0 37 .............................. TAATACACATATCCATCTGCGCTGGATATATTATTGT 22621 30 100.0 34 .............................. TGTTGGCAAACAATCATTTATATGAAACAGACCA 22557 30 100.0 36 .............................. GTTACTTCCTGTGATGGTATAAATATTTCATCTACG 22491 30 100.0 35 .............................. GTTCCGTGGGTGCGTATTAATGATCCACAGCCTGC 22426 30 100.0 36 .............................. ACTCAAAAGGCGACACTTTCGAGATGCCTGTCAAGG 22360 30 100.0 38 .............................. TAAGCGCGCCGGGTTGCATTTCCTTTCCTCCTTTTTTT 22292 30 100.0 36 .............................. GCATTTAATTCTTTTTGGGAAACTATAAAAGATTTA 22226 30 100.0 36 .............................. AGTCTTACCTTCTATCTTACCTTCTTTCATGTCATC 22160 30 100.0 36 .............................. ACAGTATTTGAGGATTTAGAACATTACAAGAAACGT 22094 30 100.0 35 .............................. GTTTATGTCGATATGATAATGCATTGATACAATTA 22029 30 100.0 38 .............................. ATAAGTTCGGCTTCATTTTTATCTACCAAACCTTTCTT 21961 30 100.0 35 .............................. GTTATCGCTGTTTTTGTTACTGCATACGCCAGACA 21896 30 100.0 36 .............................. CATGCTATTTCGTTCTGGAATGGAACGACGTATTCC 21830 30 100.0 35 .............................. TTTCCTAGTCTTATACTATCTAAAACATTGCAATC 21765 30 100.0 37 .............................. TTAATCAGTTTGTACTTAGGTTGTTCGGGTTGCTTTG 21698 30 100.0 35 .............................. ACCAAGGCGTTTAGTATCGAAACCAGCAGGTATGT 21633 30 100.0 40 .............................. GACGATGACACAACGATGGAAATAATACATGTTGGTTCAC 21563 30 100.0 37 .............................. GATGCACTATCGACAGTATTATAAGTAATCTGTGGTA 21496 30 100.0 35 .............................. GAAATTCTGTTGTCTTCATCAAAAATAATATTATA 21431 30 100.0 37 .............................. TATTAAATATGTATAAGCATATAAATGAACTGAAAAA 21364 30 100.0 36 .............................. GACAGATTGGATTTAGTACAACTGCTGAAATGGAAG 21298 30 100.0 36 .............................. TCAAATAAGCATACCTTATATGGAACAATACTGATA 21232 30 100.0 36 .............................. GTAGTATGCTCACATTTCCGCATTGATATAGCACAT 21166 30 100.0 36 .............................. ATGACGTATCATTATCAGGTGTAACAAACTCAACAC 21100 30 100.0 38 .............................. ACATTAATGTACATACATGTACAATGAACAATGGCTAT 21032 30 100.0 35 .............................. GATATTGGTGGTAAAGAAGTTAGAGGTACGTTTAA 20967 30 100.0 37 .............................. TCGATTAAGCACATATCAAAGGTACTTATGCAATTCT 20900 30 100.0 36 .............................. CCTCATCAATGGCTACTCCAGACATACTCCAGTAGG 20834 30 100.0 35 .............................. TCAATTAAGCACATATCAAAGGTACTTATGCAATT 20769 30 100.0 36 .............................. TACATTACCCCAGAGATTTTCGATACCACGATAGAC 20703 30 100.0 35 .............................. ATGTTTGGCACTGAACACTCTAAAACAACGTTTGT 20638 30 100.0 36 .............................. ACAGGGGAGGGAAAAATAGAAGACTACACGGAACAT 20572 30 100.0 35 .............................. GCAACAGGTGAAGTTACTTATGGAAGCAATCCTAG 20507 30 100.0 36 .............................. ACTGTGTGGTAGAGTATTTCCCCAAAAAGCGCAATG 20441 30 100.0 35 .............................. AAAACAGAGCTGCATACCACGATGAGCCAGGGAAA 20376 30 100.0 35 .............................. GAAAACCACAGAGCAAGCCCCTGTGGATCAACAGG 20311 30 100.0 36 .............................. AAGCCAAACGGTGAACCGTCATCATTCATAATAGTC 20245 30 100.0 36 .............................. CCGGCGAGGATGTCGATGAAAAAAAGTATGATGATG 20179 30 100.0 36 .............................. ATAATAACGGATAAAATACAGAATAAAGTACAGAAT 20113 30 100.0 36 .............................. ATCGTCCACAATTCCATTAGGGGCAACCACTCCAGA 20047 30 100.0 36 .............................. GGACTTTCAATACTGGGCATTTCTATTTGTGGAGCA 19981 30 100.0 36 .............................. GAAGATGATGTCGGTGGAGGTGTCTTCTAATGCCAG 19915 30 100.0 36 .............................. GATATATGATGCATTGAGCCTGTAATCATAGGAATA 19849 30 100.0 36 .............................. ATAATAGGGGCCAGTAATCTTTTTAAGGTGATTATA 19783 30 100.0 38 .............................. ACATCAGAAAGGATCGATATGCTTTGTCGTGCAAAATC 19715 30 100.0 35 .............................. TAATAAGGATGTATGAAACATGCAACAAAAAATAA 19650 30 100.0 37 .............................. TCTGCTCATATTTCTTGTTGTTTTCCGTCTCGAGGTG 19583 30 100.0 36 .............................. TCTCTAATCTTTTCTTCAAGTACTGCTTCAAGATTA 19517 30 100.0 37 .............................. GGGAATCAAAGAAGGGCAAAAACTACCGTGATGCTGT 19450 30 100.0 36 .............................. CCATAGATTACGATATCTGCAGGCGATGAAAGGAAT 19384 30 100.0 35 .............................. GTAGTTATTCAACAATGGGTTATGCAGGGCGCTCT 19319 30 100.0 38 .............................. TTCAATTTGAAATTTGAGTGTGAAGAACCTTATGCATA 19251 30 100.0 36 .............................. TTATGCCTCACTCCTGATATACGAACGATGCATTGA 19185 30 100.0 36 .............................. ATTGATTGGGCAATTGAACTTGCTGACAACACACAA 19119 30 100.0 36 .............................. CGAGAATATACCCAATCAGACTCATGCCCGAAAAAA 19053 30 100.0 40 .............................. AACCTTTTTATTTTTATTTATTACTGGTGTACCTGATATT 18983 30 100.0 36 .............................. ATAGGTTAACGTATTTTATCCTAATTGTACTATCGT 18917 30 100.0 35 .............................. CTTGCTATATCTGTAGCACCATTATTGAAAATTCT 18852 30 100.0 36 .............................. AACTTTATGCGTGGAAATGAGGGTATTGAGGAAATA 18786 30 100.0 36 .............................. TTTTATCACCTTATTGTAGTCACCAATACTAAATAA 18720 30 100.0 37 .............................. TCATCATCTTCAAAATGATATGTGCATAACGTATCAA 18653 30 100.0 37 .............................. CATAAACAGAAACAATAAAAAGGATTGAACAAACATG 18586 30 100.0 36 .............................. ATTTGAGACAATACGATAGTACAATTAGGATAAAAT 18520 30 100.0 37 .............................. ATGTACTTGAATGTACATAGATGTAACTATTTGTGCC 18453 30 100.0 35 .............................. GGCAGTACATCAATACAGGAATTTGAGTTTGACGG 18388 30 100.0 38 .............................. CGATGCTTATGTGAAATCTTACGCTACAAGTCAGCCAA 18320 30 100.0 37 .............................. GGAGATAGAAGAAAAGGAGGAGACAAAATGAGTATTG 18253 30 100.0 37 .............................. ATACCTAGCAGTGCAAAAATACCATACAACGCATACT 18186 30 100.0 35 .............................. ATTTTCAAAAAACTGGAGAAATTACAGCAGTCATA 18121 30 100.0 38 .............................. ACTGAGCATACGTTTAATACAACATTGAATTTTGAGAT 18053 30 100.0 36 .............................. TATTTTTAAGGGATGTAGCACTAAATGACTTAAATC 17987 30 100.0 38 .............................. ATAGATACAAGTGCTGATTCAGTTATATCTATCATCAT 17919 30 100.0 36 .............................. TAGGATTGCAGTATTTTGAATGCTTCTTGGTCTATT 17853 30 100.0 35 .............................. AACTACATTAACAACTGAGGAAGTCGAAGATATTG 17788 30 100.0 35 .............................. TAGTAAGTATCTAAAATCATATCATGGATAGACCG 17723 30 100.0 37 .............................. CTGCGTCAGAGGGGCGATCTGTGAACGCTGTTTGTTT 17656 30 100.0 42 .............................. TGAGTCTAAAAGACTCATGATACACATGCACAGCACATGCAC 17584 30 100.0 37 .............................. TAAAATGATTAATAAAACAGATTAATCTAACTTAACT 17517 30 100.0 36 .............................. GACTTCTACCACACTCATTGGAGCATTGTAACCAAA 17451 30 100.0 37 .............................. TTGCCCTCCCGTTAGTAGCAGGTCTCGCAGCCGTTGG 17384 30 100.0 37 .............................. ATGATTATTCATTTGCTCTAATTCGGTAGGCGTGGAT 17317 30 100.0 36 .............................. TACTCTTTTATTCTTTAAAGGTTTATTTAATTGTGA 17251 30 100.0 36 .............................. CATAACATTGATTATTCATAGACGGATATAGTGCCA 17185 30 100.0 45 .............................. TTTTAAGTCTCTAATTAGTAATAGGTTGTCTAAGTTTAAAAGGCT 17110 30 100.0 35 .............................. TCAGCAACAAACACATTTGTAACTGAAAATGATGT 17045 30 100.0 51 .............................. ATTTCAAACTTCAAAGTGCAACGGGAAAACAACCCGTGACTGGAGACGTTG 16964 30 100.0 37 .............................. ACATTCTGGATCGTGAATGTGTCTCCGCCGATATTTG 16897 30 100.0 35 .............................. TATGTCTGTATTCCTTGTAGATGATCGAGATTCAA 16832 30 100.0 36 .............................. ATAACATGAACTATAGAAGTATAGTTCAAGGTTGGA 16766 30 100.0 37 .............................. TCTCCTCTATCAATTCCATACTTTTCCATAATTTTTT 16699 30 100.0 36 .............................. ATCTTGGCATGCTTGATTTCATGAGGGTCATATTTC 16633 30 100.0 36 .............................. ACTTATAAAACCGTGCAAGTACACGATTTATATACT 16567 30 100.0 36 .............................. TCTGCATAGGAGCCTTGCGCGCCCATTCTTGATTTT 16501 30 100.0 38 .............................. TTGATGCCATCTTGTCCTGTACCCGTTCCTTTGTCTTC 16433 30 100.0 35 .............................. TTCAGTGTTGCAGCCGAACTTGTTACGGTACCCAG 16368 30 100.0 37 .............................. CTCTTTGGAAATGCTTTTGGTCTGTTCTCTACAGCAG 16301 30 100.0 42 .............................. GATGATGTGATTGAAAATACATGGAATGAAAATGAGTATGAT 16229 30 100.0 34 .............................. ACACAATATAAAATATGGAATCAGTAGACATCAT 16165 30 100.0 39 .............................. TGTTACAACAAAAGGTAATGGTAACACGAGTAACCAAAA 16096 30 100.0 39 .............................. AAACGAGCGGGTGAACATGAAGAACGTAATCATCTTGAC 16027 30 100.0 38 .............................. AAACAGCCATAGATAATAGGAACATTCTTTCGGTCCCT 15959 30 100.0 35 .............................. TTCATGTACTGATAACGAACTATTTATGACTGGAT 15894 30 100.0 40 .............................. ATCTGCTTGTTGTTGTACGGATCTTTGTGTATCGATCCGT 15824 30 100.0 45 .............................. AAATGCGTAAACGGATCAAAATATATATCACTCGGTGACGATTGC 15749 30 100.0 36 .............................. GCGCTTCTTTGGCGGTGAATTCATCATCATACTTTT 15683 30 100.0 36 .............................. TTCGTTCCTATGTTTGTATCTGCTGAATCTGCACCT 15617 30 100.0 38 .............................. TTTCTTATATGTTTTTTATATTCTTTTATACTTTCATT 15549 30 100.0 36 .............................. TCAATAATTTGAATTTGTTGTTTTTGTGGTGGCTCA 15483 30 100.0 36 .............................. GCAATTATCATGTTTGTATGTTTCGTCTTGAACGGT 15417 30 100.0 35 .............................. TTATATGTATAAAAACATCTATAATAGAGTATATA 15352 30 100.0 38 .............................. GATTGAGTGTAATTTCAGTATTTCCGGCAACCTGACTG 15284 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================================== ================== 115 30 100.0 37 GTTATAATCAGACCTTAGAGGGATTGAAAT # Left flank : GCCACTAGTGATGTGGTGGTAATATGTATGTGATTGCTGTATATGATGTGGGGATTGATCGTCTGAATAAGGTTCGTATATTCCTTAAACAGTACCTCAATTGGGTTCAAAACAGTGTCTTTGAAGGAGAGCTTACAAAAGCTGAATACATAAAGGTAAGGTCAGAAGTAAAAGAACTCATTGATGAAGATGTTGATTGCGTCTTTTTTTATCATGTCAGGGATAAGAAATATCTTGGTTTTGATGAAATGGGTACCAGAAAAACAAATATTGATACGATAATCTGATGTTTCTATGACATTTTCGTGGATGTTTATAAAGCTACTTCCAAATTAAAGATCCACGAAAATGAGCAATTTGGATTTTGAATTTTTGTTACATTTGCAGACTATTCATTGAATTGCTTTTTTTGAATAAACGTAACTGGAGACGCAATTACACACTTTTTTGTTGAATTATATTCGTCTCAATAAGCCTAAAATAAGATGAAATCCATCTTG # Right flank : TATTATTTAGACGCTATTTTAATAAACTAATCAATACAAAGTAAAATTAAACTTTCTGATTTAATATCGGAACTGTATATACAGTTTTGAAGTAGATTTATAACGATAAAAACATTTATTAATATGGCCAGAACTCTAAATATGAGGTCATTAGAAAATGGACGGGTTTGTGGGAGATCCCATCATAACTTCCGGCTTACTTGCGATTAAATTGAACACAGGTTTCAGTATTAGCGAATGCCCTGAAGATAAATTGAAGCAGGCAAGTGAACAACTTGTAGAATTATATCTAACTCCTGCTTGGTCAAAGGAGTTACAATCTATTTTTCCCAATAGTACTTACATTCAAAGTGCAAAAAATTATGATAAGAAAGGCAAATCGATAGAATTCTTGTATGAGCTTATAGAGGGCTTAAATTCTGAAAACAATAATGATGAGTATTGCGTATTTTGCGGCAGTCCTGCACATCAAAGAAATGATGGCAAGCCATTTGTAAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATCAGACCTTAGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 2 770245-771154 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMS01000001.1 Methanohalophilus euhalobius strain WG1_MB Ga0205985_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 770245 37 100.0 35 ..................................... AACGATTTCCCCGAGTTTGAGGACAAGGACATAAG 770317 37 100.0 35 ..................................... TTGATCATATGTATACGTTTCACTCCGTCTTTTTT 770389 37 100.0 35 ..................................... TCAATAGAAGAAGAAGCGGTTTTAAGTGCGTTAGT 770461 37 100.0 35 ..................................... ATGGATCGTTAAAATTAACTTAAAATTCTATGCTA 770533 37 100.0 37 ..................................... GACTCATGATACACATGCACAGCACATGCACCATAAT 770607 37 100.0 36 ..................................... AACAGTACCTGCCGATAGCGTTTTTAAATTAGTGCG 770680 37 100.0 38 ..................................... TTCAATGCATACATAGTTACCACTCATTGCTTAAAAGG 770755 37 100.0 36 ..................................... AAAATTCTGAATATCCGGGGCTTAATTTGTTCTTAG 770828 37 100.0 35 ..................................... TTTATGTCCTGGTTAAAGCCCAGGACCAGGACGCC 770900 37 100.0 37 ..................................... GATTTATGGTCTAAGGTTAGTCTTAAGCATGGTCTAA 770974 37 100.0 33 ..................................... ATCAACCCTTTTATCGCATAGTTGCGGTTGCTG 771044 37 100.0 37 ..................................... ATTCCATTAACCAGGAAATAAACATACTGGAACGTAT 771118 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 36 GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Left flank : ATCTAAAGAAAGAAATGTTTTTGTTGCCTCAAAAGTAAATCACATTAAAGGAATTGTTGATGAAGTATTGTTTCTCGAAGACGGGACCGCTGCTCCTCTTGAATATAAGTTTGCAGAATATAAAGACAAAATTTATATGACTCATAAATATCAGCTTTATTTGCAGGCATTGATGATTTCTGAGAATTATGATGTAGAAGTCAATAGAGCTTATATTTGTTATACACGAAGTAATAATATGGTCAAGTCTATTAAAATTGAACCTGAGGATGTGGATGAGGCTATAAAAGTTGCCAAAAAGACAATTGATATAATAGAAAAGGGAGTATATCCAAAGGCAACAAAGTATAAATCCAAATGCATTGATTGTTGTTATAGAAATATTTGCGTATAATTCTTGTATTTATAAGGGATCTGATAGAAATGGTTCAAGAATTGAGATACTTGAAAAGGAGGGATATTAGGGCTTCTTTTGGACAAAAGAGGGTGAAATTTGTGCT # Right flank : CGCTAAGAGGAAGCTTGTATCCAAATATATTTCCGAGTATCAGGAAAACCATACGAAAGATGGCCTATGATCCGAAGGGATTTCTTAATTTTTTCTATTTTTGGCTTTGTAGAAATTTTCAATAATACAAAATATACAATCTTAACATACTGTCAAGATTGTGTATTAATACCTTGAATTTCACTTTTTTACCAGTGTACATCAAGCAAGTGTTCCACGTGTACCAACTGCTCCATCATTAATGGTTCCAAATGGAAGAAGATGGGGTTCTCTAAGGGTACGTTGCATTATATGAAGCGGAGGCAAGAAGTGGCAGTCGTTTGCTCTCATGCTCATGTAAGGGAGAGGTTAGAAGAGTTGGGGAGGGGCTGAATGAATCAAAACTCTTACTCATCAGATATAATTTCATCAGAAAAATTCTCATTTGTTTCTGTAAGGCATTCTGTTTCTTGAGAAGTTGTACAAAGACTGTGAATTAATTTTAATGTATAGATTAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 3 773770-776226 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMS01000001.1 Methanohalophilus euhalobius strain WG1_MB Ga0205985_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 773770 37 100.0 36 ..................................... CCCATACCTACTCTAATTTCTGTTGCCATTTGTTCA 773843 37 100.0 37 ..................................... ATCAATGCATTAATTGATTCATGATAACTTAGTAAGT 773917 37 100.0 37 ..................................... ATTCCATGTTCTTTAATTCCATTCATGATTAAAACCA 773991 37 100.0 35 ..................................... TCGATGTAGATTTCGTTTGGTTCAATCGTAGATTC 774063 37 100.0 35 ..................................... TTGTTTTCTTTTAGTTCACTGAGTAGTTCTCTTAC 774135 37 100.0 35 ..................................... AACAATGTAGTCCTTGCCATGTTCACACAACCTGT 774207 37 100.0 37 ..................................... CACTAATGGTACATTAGTACCAATTGCAACAAATCAA 774281 37 100.0 35 ..................................... TTGCGGCCTTCTTTTCACTTATACTGACATTGCTG 774353 37 100.0 35 ..................................... TTATCGTTCACCAGCAATACAGTTCCATATGGCAT 774425 37 100.0 37 ..................................... TTCATCACCTCAATACACAAATACATTTCCATCTGCT 774499 37 100.0 36 ..................................... TTGGTACATGAACATCTCTCATCAACGCTTCCGTTA 774572 37 100.0 38 ..................................... ATGTTATCATGATGTAGGTAGATGTTAGGTACATGATT 774647 37 100.0 38 ..................................... GATATTTTCTATAATCTGCTTTTAGGTATGGTTCACCT 774722 37 100.0 35 ..................................... TTAGTATTACCAACTGATGGATTAAATTGTGGGTT 774794 37 100.0 40 ..................................... GCGTCTGCAATTGCTTTACTGATATCTGTCTTAGACATGC 774871 37 100.0 36 ..................................... CTTTTACCTTTCTTTTTATAGGTAAACTTCTTCTCA 774944 37 100.0 38 ..................................... TGTCATGCTATGTAGTCATCAATCCAGTATTACGAATG 775019 37 100.0 37 ..................................... TTTGATGTAGTCTACATCTATGTACATGTATCATGGA 775093 37 100.0 37 ..................................... ATATTTTATTCGATTTGATACTAACAATAAAGGATAA 775167 37 100.0 36 ..................................... TGGATTGGTTTGACGGGGCTAGCCGTGAATGCAGCG 775240 37 100.0 35 ..................................... ATAAATATATGGTTCTGGACAGAGATGAAATTAGA 775312 37 100.0 34 ..................................... AACGCCACACAGACGCTCTCACAGCCCCAAATCA 775383 37 100.0 35 ..................................... TAATCTCGCCGGACTTATACAAATGTATATAGGTT 775455 37 100.0 39 ..................................... AAATCAGCATATCGAATATGGAATAGGTGAATAAAATGG 775531 37 100.0 37 ..................................... ATTTCCTCTTGTTTTTCATACTCTCTGATAACATCGA 775605 37 100.0 37 ..................................... TACTTATCATCCAATTGGTTGATTGCCTCACCCAATG 775679 37 100.0 34 ..................................... AAATATATTCTAGGTAATACAAAGAAGGAAGAGT 775750 37 100.0 38 ..................................... ATATCTCCGCCGTGAGTATCTCCCTCTGTCCATGTGGT 775825 37 100.0 35 ..................................... TATGAATGAAGTCTCAATGCATGAGTATGATACTG 775897 37 100.0 35 ..................................... CTTTGACAGGCTTTTCTTTTCGACTGCTGCTCTTA 775969 37 100.0 37 ..................................... AAAAATATTCCTCTTGAAGCGGTGTCTTGTGTTGGAA 776043 37 100.0 36 ..................................... AAAAATATTCCTCTTGAAGCGGTGTCTTGTGTTGGA 776116 37 100.0 37 ..................................... TCTGAATTCGAATAACAGGTCTTCGAATTCGAATCGG 776190 37 89.2 0 .............................GC.T...G | ========== ====== ====== ====== ===================================== ======================================== ================== 34 37 99.7 36 GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Left flank : ATATAAACGTCTTCAATTGGTTGGTGACAGACTTGCTGAAATTGAATCATTGATCGATTGGAAACCTTTTCGACCAATCTTAGAATCGATGTATAAGAATAGAACAGCTTCAGGCGGCAGACCTGAAGCTGATGTTATTGTGATGTTCAAAATGCTTGTTCTGCAGCAATGGCATGGTTTATCTGATCCAGAACTTGAAAGACAATGTATTGACAGAATATCATTTAGAAAATTCCTAGGATTTCCTGAATATGTACCAGACAATACAACTGTCTGGTCATTCAGAAAGAGAATTATTGATAATGGGAAAGAGAAGCAAATATGGAATGAGATGCAGAGACAGCTCAATGCTCTTGGTTTGGAAATCAAAAAAGGAACGATCCAGGATGCAACTTTCATTCACTCTAACCCTGGTCATGCTAAAGCTGACACACCCAGAGGAGAGGATGCTAAAACAACGAGAAGCAGAGATGGAACCTGGGTGAAAAAAGGAGGTAAAT # Right flank : GTACATTAATACAATTCAGGAGATAACCATGAACAACGCTGATGAAATCATAAAATACCTTGATATGAGCAAGCACCCCGAAGGTGGGTTTTTTAAAGAAACTTACAGATCGGGGGAAACAATCAAACACCAATACCTACCGAAAAGATTTACTATAGATCATGCGTTTTCCACGGCAATCTACTTTTTATTAAAACAAGGCGACTTTTCAGCACTTCACACAATAAAACAGGAAGAAATCTGGCATTTTTACAGTGGGGCACCCATTGACATACATATGATACACCAAGATGGTGATTATGAGCCGATCCATCTTGGAAACGACATATTAAATGGCGAGATACCACAGGGTATTGTCCCTGCAGGTTCAGTCTTTGGTGCAACAGTGTGTGATAATTCCAAATATGACTATTCACTTGTGGGATGTACGGTTGCACCGGGTTTTGAATTTGAGGACTTTACACTACATAAGAAAGATGAATTACTGGAAAGATTTGCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 4 1631878-1630922 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMS01000001.1 Methanohalophilus euhalobius strain WG1_MB Ga0205985_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1631877 37 100.0 40 ..................................... ATAAGTTAAGTTAAATCAATATTAATTGATAAAGTAAAAT 1631800 37 100.0 35 ..................................... ACTATATAAATTAATTCATGTTTAATTTCAGTTCT 1631728 37 100.0 39 ..................................... TTACATATTGGTTACTATCATCCAATTCATATACGCTAA 1631652 37 100.0 41 ..................................... ACCTGTGCACCCATTTCAGAAGTAGCATCTGCACGTATCTT 1631574 37 100.0 38 ..................................... AACGGATAGTCATATTTTTTCATTACATGAGGATATAA 1631499 37 100.0 40 ..................................... TCACCCTGAACTCATACGGTCAAATCTATACGCTTAATGT 1631422 37 100.0 40 ..................................... TTAGCAGCCTCCGTTTTGCTCATTCCCAATTTAGTCTTAA 1631345 37 100.0 39 ..................................... TACCTGTTAGGCCATACATAGGTAGTAGTGCTGTAATCT 1631269 37 100.0 37 ..................................... AGAACTTAATTTTCCAAGGTCGAACGGTGCATTATAT 1631195 37 100.0 46 ..................................... TCGTGTGGCTGTGGTGCCTTCTCCTTCCACGTTTCCAAATTTTTAA 1631112 37 100.0 40 ..................................... CGCCTGCCTCATGCGCATAAAACTTATCACATAGATATGT 1631035 37 100.0 40 ..................................... CATTTTCTGTTTTGAAATGGTAGTTTTTACCATTTTGGGA 1630958 37 83.8 0 ....................A..T.......AC.TC. | ========== ====== ====== ====== ===================================== ============================================== ================== 13 37 98.8 40 GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Left flank : TGGTTTAATGAGAATTCAATATAGTGTTTTTGCAGGTGAAATTCCTTCGAATAAAATAAATGAATTGTCCTCCCTACTATTTGACAGTAATCTAGCAGAAACAGATAATATCACAGTATTTCCTTTATGCAGGGAATGTCTGAATAATGTCCTTACATTAGAACCATTGCCTCAGGAAATCAAGCATCTGTCATTATGATGTACAGACCTTTATAAGGGGTTGAGTAAAAAGGAGGTCTGTACACATATATTATCATTTGTAGGCATCAATGATAGAAATCTTGCCTTAAACGGACATCGACTTTATATTAATATTTTTTTGATGATGGCACTTGATAGTGTTTTACTGATGTTAACAGCGTTAATTTTCACGACGCCTCCTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGGCAAATTGAGGTCTGTACACTACCCCCTCAAAAAGAAGAGTTCTAATGCCTCCAAAAAGGATTTAAAGGAAAAAAACATAGGG # Right flank : TTTTGCAATCTATTTAGACTATGTGACAAATTATCCACTCAAAGAACGATTTGCTCAATAATTATAGGTCGATGAACATGGAACTTAATGAAAAAATGTATTATGCTTGCTCATTATGCAGTACAGAAGATAAGGTTGTATGGCACAGACCAAAAACGAAGATCTGGCAAGAACACAGACGATACATCGATTTAGATCAGACAAATTCAGAGACTCCACAATACTTCTGGTGTCTAAAACACAATCGTGCACATTCATTGAAAAGAGAATGCCTGAAATATAAGGCTACAATTACTTTCAATGGTAATGAAGGAAATAGGGATTGTAATACAAAACAATTATCCCATAACGACACACTTGATGAAATCAGAAAAACCGTTACTGAAAAGTCCAATCAATTGGATTGGAAAAAAGTTATTGGCAGCAACAGTCTTCCATATCCCTGCACCAGGGAATCAAGGTTGATATTACCCGACATAATATATTGTCAGCGTGATCCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 1644959-1646502 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMS01000001.1 Methanohalophilus euhalobius strain WG1_MB Ga0205985_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1644959 37 100.0 38 ..................................... AAAATAGATGATGACATACTCCAAGGCGGTATGCTTGA 1645034 37 100.0 36 ..................................... CCAGATGCACCTGTCAGATCAAGCCCGTCACCACGT 1645107 37 100.0 38 ..................................... TTACTATAGTATATGTCATCCCAATCCGGGCGGGCGAA 1645182 37 100.0 38 ..................................... GCAAACCCATATGTCACGAATTTACCGTCATTTATTAT 1645257 37 100.0 38 ..................................... AGCATGTATTGAGTGTACCGATTGTGGTACACTTTTAT 1645332 37 100.0 43 ..................................... TAGATAGCAATTCGTGGACAGTCAGTCTGTCTTTTTGGACATT 1645412 37 100.0 40 ..................................... TTAATCTCATCCTCTAGCTGTATAATGTCCGATTGAATCA 1645489 37 100.0 40 ..................................... TGTACGTTTGTCATATTGATAAAACCTGTTTGCTACATCA 1645566 37 100.0 40 ..................................... TTGCCTTCATTTTCTGTTTGTATTTCCTGCATGACGACTT 1645643 37 100.0 38 ..................................... CCTGTGTGTTTCAGGTGGCCTTTCGGCATTGGCTTTTG 1645718 37 100.0 37 ..................................... CATTTGCTTGTTTGCGAATTATCATATCATCAATTTC 1645792 37 100.0 35 ..................................... ACAACTCCTTAGTAACAACCAATGTAGACTCATCT 1645864 37 100.0 36 ..................................... TTTGGGTCCTGCGAGCCCAGGGATAGTGGAGATCCC 1645937 37 100.0 39 ..................................... ATTTGATTTTTCTCATTGTTGGCACAAACTATATATATT 1646013 37 100.0 40 ..................................... ATAAATCAATTCTGCTCCTGTAGGGAGATCGAAATATTCC 1646090 37 100.0 42 ..................................... TTTGTTCTGTTTTCGGCCTGTGTCCAGGAAAATTCCACGTGG 1646169 37 100.0 36 ..................................... CCAGTTCACCTGCGCAATATTTGAGATGAATATTGA 1646242 37 100.0 41 ..................................... GCAGAGGACAGGCCAACATCTGCAAGAGTCGCAACAATTTC 1646320 37 100.0 37 ..................................... TTGTCATTGTACTCTACCCTAGCTACTATTTCGTCGT 1646394 37 81.1 35 .....A.GT...T....A..A..T............. TACTCAATCTCAAAATCTTTCTTTTCTGTGTTGTA 1646466 37 81.1 0 .....A.GT...T....A..A..T............. | ========== ====== ====== ====== ===================================== =========================================== ================== 21 37 98.2 38 GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Left flank : TGACGTTTTGATTAGTGGATATATCCACCTGTACAACCGTGGTTATCATGACACTCTAAATAATAAGAAGAGGATTCATATAAACTTATTGTATTTATTCTGTACAGGGAGTTATTTCTACATGAATTAATGCAATAAACGCACCTATATGATTTTAAATCATGAATACGTCATAGATTTAATTCGATTAATGAACTATGTGTAAAGACCTTTATAAGGGGTTGAGCCAAAAGGAGGTCTGTACACACAGATTATCATTTTCAGGCAATTGTGGGTTTAATTTAACCTTAAACAGACATTGAATATTTATCAATCTTTTTATTATGAAGCCTGCAGATAGTGTTTTACTGATGTTAACAGCGTTAATTTTCACGACGCCTCCTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGGCAAATTGAGGTCTGTACACTACCCCCTCAAAAAGAAGTATTCTAAGGTCTCCAAAAAGGATTTAAAGGAAAAAAACATAGG # Right flank : CTCGTCATCGACGAAATGGAGATCTATTCCTTGATTGATCAGTTTCAAATATAAATTCATCTCTTTTGAAACAGGAGATTCCTTCCGTAAGGTAGGAGAGATAAGAACAAATTTTATCGAAGTTCTGGAAGAGTAACGTTAATCTGAATCCTTAATACTACTTTTTCAAATTAAATCACCTCTAAAAAATACAATGAAGTCCTACCTCTCCTAAAAAACTGAAATAACAAAACTTATACAACTTACCATCAATCATTTGCTGGAAAAATAAAATATGAATGGGGTACTAAAAAGTGGGAGATATCAAACTCAATCCTTCACAATCACAGGCAGTTGATTATACAGACGGACCACTTCTAATACTAGCAGGTCCTGGTTCTGGCAAAACCCTGACCATTACGGAAAAGGTCGTAAACCTTGTGGATGAAGGATTTTCTCCTGACCGGATACTTGCCCTTACCTTCTCTGAAAAGGCCGCAGGTGAGATGGAGGAGAGAATT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //