Array 1 341220-343369 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXLT01000002.1 Helicobacter equorum strain MIT 12-6600 Hequorum_2_length_404386_cov_49.9872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 341220 36 100.0 30 .................................... AAAAAGAGGGCTTTAACAAAGTTGAAATCG 341286 36 100.0 30 .................................... GTTACATGAAAAAAAGTAAATTTAATTTGA 341352 36 100.0 30 .................................... TCACATGAATCCACAGAAAATTTCCGCATT 341418 36 100.0 30 .................................... CACCTTGGTATTGTTGCAGGTCAATATAAA 341484 36 100.0 30 .................................... ACGCCCTCGTTTCCTTGCTCGTGTATTTTC 341550 36 100.0 30 .................................... CCCAATTTGCCGAGTATGAAGACGATAGCG 341616 36 100.0 30 .................................... TGGTATCGCTCAAGCAAGGCTTTATAATTT 341682 36 100.0 30 .................................... TCGCGCATTCTTTGAAGTATCAATAATATT 341748 36 100.0 30 .................................... CTTTCTCACGCGCATTTGCATTAGCCTCGA 341814 36 100.0 30 .................................... GATATGCCATTGCTTTACCCAAAAGATACA 341880 36 100.0 30 .................................... TACTGCCTTTTCAAACTCATCTCTAAAGTC 341946 36 100.0 30 .................................... ATTGCTATCCTTTGACTTTGTATGTTACGC 342012 36 100.0 30 .................................... CTTATCAATCTAAAAAACGCGCAATGTATT 342078 36 100.0 29 .................................... TTCAATTTGAGTTACCTAAATTCAACTAC 342143 36 100.0 31 .................................... TCCCATGAATCCACAGAAAATTTCGGCTTTA 342210 36 100.0 30 .................................... ATTGCTATCCTTTGACTTTGTATGTTACGC 342276 36 100.0 30 .................................... CTTATCAATCTAAAAAACGCGCAATGTATT 342342 36 100.0 30 .................................... ACAAGAGTTAGATAAACAAACTTTATATCG 342408 36 100.0 30 .................................... GATTCTGCAACAAAATACAAGTTGGATTGA 342474 36 100.0 30 .................................... GCTTGAGTTTATATAACTTACTTCAAGCGT 342540 36 100.0 30 .................................... TGTTGTATCAAACATTAACTGGTTGAAGTT 342606 36 100.0 30 .................................... CATTGTCTTTACCTCCTTTCTTAGATTTAA 342672 36 100.0 30 .................................... AGAATGCTATCACACAAGATGTCACGATTT 342738 36 100.0 30 .................................... GGTAGTGCGTTGCTTGGCACTGCTTTAAAC 342804 36 100.0 30 .................................... ACACTCCCAGTTTCAAATGAAATTAGACCC 342870 36 100.0 30 .................................... TTTTGGTAAATCAGTGTATGAAAAACCAAG 342936 36 100.0 30 .................................... TTCTATGAGGCTAAAGAATAAGGAGACTAA 343002 36 100.0 30 .................................... TTTACCTATGCTTACATCAAGTGTTGTAGG 343068 36 100.0 30 .................................... AAAGGCTGCTGCACTTGCTACTGCCATTTT 343134 36 100.0 30 .................................... TGAAGAGAGTGATAAAAGAAAGAATTATAT 343200 36 100.0 30 .................................... CCTATCCCTCGATAATTTTTCATTTTCCTC 343266 36 100.0 30 .................................... GTAAAAGCCAATAACTCTTGATCCTTTGGG 343332 36 91.7 0 .................................GGG | TG [343357] ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.7 30 ATTTTATCATAAAAAGATTCAGAAAGGGACTAAAAC # Left flank : TTTTTTATGATCCAATTTAGTGTATATATGCGAATCTGCAAAGGCGTTGCCTCTGCCAAGTCTTCTATCAATAATATTAGGAAATTTGTGCCGCCAAAGGGAAATGTGCGGTGTATCACAATTACAGAAAAGCAGTTTGATGCTATGGAAATTTTACTTGGTGGTGTGAGTTTTAATGAAGAGATGAATACTCAAAAAAATCTGACACTTTTTAGTTTTGATGAAAAAACTGGAGATTATGTATATTTGAATGATACAAAACAAGATACACAAAACATACCAACACATAAAAAGAAGACATCAAGCAAAACTATCTATCAAAAAAGTTTATTTGAGCTGTATTGAGACACGATAGAACATCAGTAGTTTAAAAGAGGTGTCAGTCTAAAGGGATTTTCGAGCACTCATAGAGCCTCACCCTGCGCCGACTGACAAGCTTATTTTAGTCCCTTTTTGAATCTTTTGTAGTATTGTAGCATAAGATTCTCATTTTTGAACCT # Right flank : GATACGCGATTGGGAGGAATATAGATTAGCCAAGATAATAAGCTCCATAAATTCCAATAAAATCCTAACATCATATAGGAAGGTATGATTTTCTTGTTGGATTTCTTTTGGTATTTCATACTCCGCCATATCACCACTATCACATGCTTCGTCAAGAAACCCTACAATGACAAGTTTTTCATCTGTATTCCTTCGTAAATTAAAGATATAGAGATTGTATCAAAACAATTATAAAAGAAAGTCTTGTGCAATGTGTATGTAAATATTATCGTGATAGTTTGTGATAGTTTTGGTGCTTTTTGCAAAAGCAAACCGCAAGGATAAAGAGAGATTTTTAAGGATTGTAGAGAATCTAACTAGAATAAAAACTATATACAGGTATCGCAAGAAATTTGCAACACCTGTTTTGTGGTATTAATGATGCTCAAGGTAAGCGATAGCTTGGAGTGCGGCGGTAGCACCATCACCAGCAGCGCACACGACTTGCTTGGAAGCTTGCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATCATAAAAAGATTCAGAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //