Array 1 57588-60056 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYF01000052.1 Cronobacter sakazakii strain MOD1-comp59a csakComp59_contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57588 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 57649 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 57710 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 57771 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 57832 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 57893 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 57954 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 58015 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 58076 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 58137 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 58198 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 58259 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 58320 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 58381 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 58442 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 58503 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 58564 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 58625 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 58686 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 58747 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 58808 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 58869 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 58930 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 58991 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 59052 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 59113 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 59174 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 59235 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 59296 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 59357 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 59418 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 59479 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 59540 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 59601 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 59662 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 59723 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 59784 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 59845 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 59906 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 59967 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 60028 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGTGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14365-14216 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYF01000039.1 Cronobacter sakazakii strain MOD1-comp59a csakComp59_contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14364 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 14304 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 14243 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 24100-25227 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYF01000068.1 Cronobacter sakazakii strain MOD1-comp59a csakComp59_contig_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24100 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 24161 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 24222 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 24283 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 24344 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 24405 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 24466 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 24527 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 24588 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 24649 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 24710 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 24771 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 24832 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 24893 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 24954 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 25015 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 25077 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 25138 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 25199 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //