Array 1 42800-43421 **** Predicted by CRISPRDetect 2.4 *** >NZ_AELR01000042.1 Methanobrevibacter smithii TS147A Contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 42800 37 100.0 36 ..................................... ACCGTTAAAATACTTGTATGGTATCTTCCTTTTACT 42873 37 100.0 36 ..................................... ATGGGTGATGGTGTGGGATGGTTTTTTTTATATTGG 42946 37 100.0 37 ..................................... ATTTTTTGGATTGTTGAACCCACGACCGTCTATATAA 43020 37 100.0 35 ..................................... GATTACTGAATGGTTGGTTCATGATTTCTCTTAAT 43092 37 100.0 35 ..................................... TCTACCAACCAACCCCCACAGTGGGGGATAATGAC 43164 37 100.0 35 ..................................... TCTTTCGGCTCTTGTTAGGCGTGTATAGGATTTAT 43236 37 100.0 37 ..................................... TCTAAAAATAAAGTATCGGTGTTTTTCCCCTTATACC 43310 37 100.0 38 ..................................... ATTAATAGATAATTCATTAAACTGTATTTCACTTGCAA 43385 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 100.0 36 ATTGCAGAAAACCATCTATTAAAATAAGGATTGTGAC # Left flank : GATGAAGGTCAAATCAGGATTCAAGATAAAGCTCGTAAACTATTAATAGCTAAAATAATGAATAAACTAAACTCTAAAATTAACTTTAATGATAAAAAAATGAGTTATGAAGATATAATTCTTTATCAAGGCAGATTACTTGGTAAATATTTAACAGGAGAAGAGAAAAATTATGTTGGATTTTCAAGAAGATGGTGAAGATCAGCTAATTTTTCTTAAAATAATATTTTTTTATAAATAATTAATACTTTTTATTTTTCAGATAAATCAATATTTTAGCTAGTTTTCTTTAGATTACTTTTATCATGTGGTTTGGATGATGATGATCTTAGATTATATTAATTATTGCTTTAATTTTAGCTAGTTTTAATAGAAAAGTATTTAAATAATTTGTGCAATAATTTATATACAGAGGTTGGGTGAAGTAAAGTTCACAGAAACTGTCACTAAATACAAGTTTTTTGCATAAAAAAGTGAAATTTTAAGAAATTTTCGTGGCT # Right flank : CATAATATCACGTGTTTTCTCATAAGTACTGTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAAAACCATCTATTAAAATAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 268-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_AELR01000043.1 Methanobrevibacter smithii TS147A Contig39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 267 37 81.1 36 C...T..G....G.....G.....A.T.......... CGAAATACACACCACAAACACAGAAACAGCTGAATT TT [261] 192 37 100.0 38 ..................................... TTATTTATTTGTATTACTGACGATGCAACATACTATAA 117 37 100.0 34 ..................................... GGAGGTCTTTTATGGTGAATAAAGAATTTGAGTC 46 37 97.3 0 ..........................T.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 94.6 36 GTCACAATCCTTATTTTAATAGATGGATTTCTGCAAT # Left flank : ATTCAAATATTTGGGATTAAATCCAATAGCCAAATCAAAACAGGTAATTGCTTCAGTATATGATTTTTTAAACATTAAGCACTCCCCTTTTGAATACAGCGCCATATCATCAGCAGGATTAATTTCCAATGAATTGTTAAAGCACTCCAAAGCATCATCAAATAAATCATATTCCATTAAAATTTTACCCACATGAAACCAGATAAAAGGGTTTTCATCATCCTCGCTTAGGGATCTGTTGTAACACTCCATTGCTTCAACATATTTTTCAAAATGATTTAAACAGCATCCTTTTAAAGCCCAAAGATGGCTGTTTTCATTATCTTTTTTTAAAAGCTCATCACATAATTCCATAGCTTTTTCATATTCATAATCATTCATAAATTTAGAAATGATTTGCAAACTTTCAACATTCATATATAACCCTGCAACAATTTGTTAATAATCTTTTTAGAATTTACTTTATAAAAATCAACTGGAAATATTAATCATGATAAAAA # Right flank : TCTAACCTAT # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATCCTTATTTTAATAGATGGATTTCTGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //