Array 1 1290-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHDU01000022.1 Acinetobacter baumannii strain MRSN843 MRSN843_contig00022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1289 28 100.0 32 ............................ TAACGTGGTGTGAGCCGAGAACCTGCAAGCCA 1229 28 100.0 32 ............................ TTTTGATGAGCAGGTATTTACACAATATAAAT 1169 28 100.0 32 ............................ TGATCAAGAATGATATGTACTAGCTCACTATC 1109 28 100.0 32 ............................ TTCGAGTCATAATTATAGTAAAAAGTCATCTT 1049 28 100.0 32 ............................ TACATAAAAATGCGGACCCAACGATAAGGATT 989 28 100.0 32 ............................ ATTAATCGAGGAAAAAAAACATGAATGTTAAT 929 28 100.0 32 ............................ ATCACTTAACCCATCATCAATAAGTTGGCCTT 869 28 100.0 32 ............................ AGTCACCATTGTTCGAAGCTGTTGGGTCATTA 809 28 100.0 32 ............................ TTGTTGCATCATTTGCGACTCATGACTATTTG 749 28 100.0 32 ............................ AAATACAAAGTTAGGTATTGGTACTGGTGAAA 689 28 100.0 32 ............................ AATATCCACCAATGATTTTGGTAAAGATAGAG 629 28 100.0 32 ............................ AGACACATACGTAATGGTGTCAATATCGTATA 569 28 100.0 32 ............................ TGCCCCAGCGAGCAAACGCCTTAAAAATCCTG 509 28 100.0 32 ............................ GAGATTTTTGTGCGCTTATAGAACATGAGCTT 449 28 100.0 32 ............................ GTAGGGATAGTGAGATTGTAGACCTTACAATG 389 28 100.0 32 ............................ CCGCAGATTTACGGATGCCTGTAACTGTCATG 329 28 96.4 32 ...A........................ TATCATGAACATTGTTCCTTGACCCACGGGCA 269 28 92.9 32 ...A.....T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 209 28 100.0 32 ............................ TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 149 28 82.1 27 ....C......TCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 94 28 92.9 32 ....C....T.................. AAACAACGAGCCTTGTCGCGGGTCGCCCATGT 34 28 96.4 0 ...A........................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.2 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCCTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGCTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAGTTAATCGTCTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : ACAAATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6380-8328 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHDU01000022.1 Acinetobacter baumannii strain MRSN843 MRSN843_contig00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 6380 29 96.6 31 ............................A GTCTTTGCCAAGTATGTTAAAGACCCAGCAC 6440 29 96.6 31 ............................C TATTTATTTAAAAACATTAAACGATTTAATT 6500 29 96.6 31 ............................A ACTGTAGTGGGTCATAAGGAGATTTAGTTAG 6560 29 96.6 31 ............................C AACATATGGAATTGCAGCAACCGATGCATAA 6620 29 100.0 31 ............................. AGTTCATCAAATGAAACTAACGCTTCCCATT 6680 29 96.6 31 ............................A CTCAGGCAATTGTTGGGAAAAGTCGATTTCT 6740 29 100.0 31 ............................. GTTTCAAGGTCTCGGATAATTCCACATTCAT 6800 29 96.6 31 ............................A TATACATCGTTATTGCATTCTGCATATCCCA 6860 29 96.6 31 ............................A TTAAGAGAGGCTTGTTTAGATCAATACTTGC 6920 29 96.6 31 ............................A TAACAGGTCAAGTTACTGTTGACCCGGTAAA 6980 29 96.6 31 ............................A TAACCAAAATGAGAATAAAAAATTCTTTAAA 7040 29 96.6 31 ............................A TCAATTGACAGGGGTTTACCTTTAGCACCCT 7100 29 96.6 31 ............................G TGTCATTTTAATGATATGAGTGACAACACCC 7160 29 96.6 31 ............................A TGGACTAAAGAAATCTACGCTTTCCCAGATA 7220 29 100.0 31 ............................. GTTCAGTCTGTCACCATTACCGTAGGAAGTA 7280 29 96.6 31 ............................A CTGGCCGCCAAGTACTTACGATGACATGGAT 7340 29 96.6 31 ............................A ATGACCAGGGCACGGCAGATCGTTTTAACTC 7400 29 100.0 31 ............................. TTTTGAGGTGCTATAAATGAACGATAAGAAA 7460 29 96.6 31 ............................G CGGTAAAAATGGGCGTTGCTTTTGACATTTC 7520 29 100.0 31 ............................. CTGAGGAATACGCCAATAAATCATATCTAAA 7580 29 100.0 31 ............................. GATCAATGCGGCCAAACATATCCGGCGAAAT 7640 29 100.0 31 ............................. TCACCTGTAGTAACAGTTGTTAGATAACCCA 7700 29 100.0 31 ............................. CTGGAGTCATGGGGGCTAATTTATTTAAACG 7760 29 100.0 31 ............................. TATCCCTCGATCTGCTGTAACGTGGTGTGAG 7820 29 100.0 31 ............................. TGTAAAACCTCTGGATTAAGCATTGCGTTCA 7880 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 7940 29 93.1 31 ......T.....................A AAATGACCATCAATCGACAGTGGTTTACCTT 8000 29 96.6 31 ............................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 8060 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 8120 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 8180 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 8240 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 8300 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 33 29 97.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACCCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTCGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : CTCCCCCCTCCTCGATCGGCTGTGAAAG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37-1326 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHDU01000023.1 Acinetobacter baumannii strain MRSN843 MRSN843_contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37 29 100.0 31 ............................. TTAAATCGTCATATTAAGGCGCAGTTCCGAA 97 29 96.6 32 ............................A AAGATCTGACCAGCTAAAACATTCTGGTTATC 158 29 100.0 31 ............................. AGAAGCAGAAAATATCCAACTCATTGCTACT 218 29 96.6 31 ............................A CATGGGAGCTTTCATTCATATATGTCATTAG 278 29 96.6 31 ............................A CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 338 29 100.0 31 ............................. GTTTTGCTAATTTATCAATATCGATTTTCAC 398 29 89.7 31 ...AC.......................G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 458 29 93.1 31 ....C.......G................ TAAATGCTCAACTACTTCTGTAGCTAATGGA 518 29 89.7 31 ...GC........C............... CTCAACTCATTGATTTTTTCTTCTCTTGCCA 578 29 89.7 31 ...GC.......................A TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 638 29 89.7 31 ...GC......T................. TCAAATGATTTAATGAGCTTGTAGCCATTTT 698 29 82.8 31 A..GC.......T...............A CGTCTTCTAATGATGGACTTTAATCCAATAT 758 29 79.3 31 A..GA.......TC..............A TCTCACTGAAGATATGACCATCACTTTCTTC 818 29 79.3 31 ..CGC.......CC......C........ TTATAACCACCAGTTAAAGTATTGACTAAAA 878 29 72.4 31 ...GC.G...A..C.AT...........A CAATCGGGGACGTGGTCAAAAAGATTATCAG 938 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 998 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 1058 29 89.7 31 ....G........C..............A TTAAAGCATTTTCATATGAGCCTTCCTCATT 1118 29 86.2 31 ....A......TCC............... TCGGATCAGTCCAGTCATCATTCTCGTCAAT 1178 29 89.7 31 T..G........G................ ATTATTGCGCGACAGAACGTATCAATTAATG 1238 29 89.7 31 ...GC.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAGG 1298 29 82.8 0 ..CGC...................AT... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 89.4 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : GAAATCTCCCCCCTCCTCGATCGGCTGTGAAAGTACG # Right flank : TTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGGATGGCG # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //