Array 1 520613-522715 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKT01000003.1 Salmonella sp. gx-f8 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 520613 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 520674 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 520735 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 520796 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 520858 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 520919 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 520980 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 521041 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 521102 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 521163 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 521224 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 521285 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 521346 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 521407 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 521468 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 521529 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 521590 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 521651 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 521712 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 521773 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 521834 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 521895 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 521956 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 522017 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 522078 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 522139 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 522200 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 522261 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 522322 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 522383 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 522444 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 522505 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 522566 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 522627 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 522688 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 540348-542329 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKT01000003.1 Salmonella sp. gx-f8 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 540348 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 540409 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 540470 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 540531 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 540592 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 540653 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 540714 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 540775 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 540836 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 540897 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 540958 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 541019 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 541080 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 541141 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 541202 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 541263 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 541324 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 541385 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 541446 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 541507 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 541568 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 541629 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 541690 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 541751 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 541812 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 541873 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 541934 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 541995 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 542056 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 542117 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 542178 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 542239 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 542300 29 100.0 0 ............................. | A [542327] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //