Array 1 25065-20407 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQK01000005.1 Bifidobacterium bifidum strain 1887B Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 25064 33 100.0 32 ................................. ATCAACGGGCGACGTTTGCCGGTGAAATTTGC 24999 33 100.0 32 ................................. AGGTACATCGTGTTGGAAATCGTCTGCGGGTT 24934 33 100.0 32 ................................. GTTATTACTGTAATCGGTATCCGCTCGCAACG 24869 33 97.0 32 T................................ TCATACCGTAGGTTTTACCCAAACCGCGTGCG 24804 33 97.0 33 C................................ AATACGCCGGACGGGCTCACCGTTGCCGTCAAG 24738 33 97.0 32 C................................ ACCGACTCGCAGATCACGTACACCGATTCGTC 24673 33 100.0 32 ................................. ATTTCGTAGATGTTCGGGTTGTTGCGGCATAT 24608 33 100.0 32 ................................. TGGTCTTGACCCATTGCGCGCCGTCCCACACA 24543 33 97.0 33 T................................ GGCGCACGCGTCAATCAGGTCGCCACCAAGACG 24477 33 100.0 32 ................................. TTGTCTATGAGTTGCATACTGCGGTTGTATGC 24412 33 100.0 33 ................................. AGGTGTGGTCTCAACCAACGGCGCGTGGCCTCG 24346 33 97.0 34 T................................ ACGGACTCGATGAAGGCGCAAGTGCTTAAAACCG 24279 33 100.0 33 ................................. TGCTATCGCTTGTTTGGCGCTGGTGAGTGCAGT 24213 33 100.0 32 ................................. ATGTATGCCATATCGTTGACGTGCCCGGCATT 24148 33 100.0 32 ................................. AACTCGCCGGACGGGCTCACCGTTGCCGTCAA 24083 33 100.0 34 ................................. ATAACGTCCTGCGCCTGAGTGCCATAGATTCCAT 24016 33 100.0 32 ................................. CCGGTGCTGGGTGCTCGGAGGCCACCGAAACC 23951 33 100.0 32 ................................. ACTCATACCCACCTATGCGCGTAGCTCAGCCG 23886 33 100.0 32 ................................. ATCGACCTGCCGGGCAGCATCAAGACACTGCT 23821 33 97.0 32 C................................ ACGGCGGTAGCGGGCCTCAGATCGGCCCCATC 23756 33 100.0 32 ................................. TGCGGGTACCGTCATGCAAAACGTCCTGCCCC 23691 33 100.0 32 ................................. TTGAAAACGTCAAGCGGGTTTTTGAATGGTTC 23626 33 100.0 34 ................................. ACGTGAAACCATTTGTCTACGTAGTTGTAATACA 23559 33 100.0 32 ................................. AAGTGAGTCGGCGACTATTTCCACGGTTTGTG 23494 33 97.0 34 C................................ CACGGTCTTGGTGGCAACCTGATTGACGCGTGCG 23427 33 100.0 33 ................................. TGGTGCGTACGTCGTAGAGGTACGCGAACATGC 23361 33 100.0 32 ................................. GCAGCACCGTAATTGACATCTGGCGCAAGCAT 23296 33 100.0 35 ................................. TATGAGCAGAACAGGCGCGATCAGTATCCGATATC 23228 33 100.0 33 ................................. ACGTGAAACATTCAGGCCGTCGTCGCGTGTGAT 23162 33 97.0 33 A................................ GACAAGCACGGACAACAGGCATTTAGGCAGGCC 23096 33 100.0 32 ................................. CAGCTGGATAAGGCAGATGTTCCGTATCGTAT 23031 33 97.0 33 C................................ ATACAGCGGTTTGAGTATGGGCATGATTTCGGA 22965 33 100.0 33 ................................. ACGTTAGATCAGCTCACCGGCGGGCTCGGCTAC 22899 33 100.0 33 ................................. CAGGAGCATGTCAAGACACTGACCCTCGACCCC 22833 33 97.0 33 A................................ ACCCACGCCCTCGGCAAGATCATCATGCGGGCC 22767 33 100.0 33 ................................. CGTCAAGAGGTCGTCAACACGCCCAGCGACGCC 22701 33 100.0 33 ................................. ATCTCCTTACTGTTATTTGTTGTCCGCCCCATT 22635 33 100.0 33 ................................. TCGCCACGCTCCCCCCGAAGATTATGGAAGTTA 22569 33 97.0 34 A................................ TCCGCGGAGGGCTCGTCGGCCAGCAATTCCGCCA 22502 33 97.0 33 A................................ AGACACGCCCGCAGGACAGGGGCAGCTGGACGG 22436 33 100.0 33 ................................. TTCGCGGTCTCGGAGTTTGACGACTCGATGATC 22370 33 100.0 33 ................................. ACTGCCTCGTAAACGAGGGGCGGCGTGTAACAG 22304 33 97.0 33 T................................ ACGAAGGTCGCGCGGGGTACGTCCGCCAAGGTG 22238 33 100.0 32 ................................. GGGTTGCAATGGCTGGACGGGAAAACATGTCT 22173 33 100.0 33 ................................. ACGTACTCGTTGCGGGCTAGGAGTTCGGCGCGG 22107 33 100.0 33 ................................. CGCATGGCTGTTTTGCTATCTACGTACATGCCT 22041 33 97.0 32 T................................ ACCGAACGTGATCGTTACGACTGCATGATAAT 21976 33 97.0 32 C................................ ATTTTGGTTGAGTCTTGGAGTGCGGTGGCCGC 21911 33 100.0 32 ................................. GCGGTGAGGTAGTCATCGCCTATTTCGTCCGG 21846 33 100.0 33 ................................. CACCACCTTAAGGGCGAGTGGCTTATCCCACGT 21780 33 100.0 32 ................................. TCTACCTATATAGGTTCTTTACAAAATCTACT 21715 33 97.0 35 T................................ GAAACCACCCGGGCACGCAAGACCAAGCACGTGCA 21647 33 100.0 33 ................................. TTTTACCGAGTACTCGGTCGCTGACATAGCCTT 21581 33 100.0 33 ................................. TGCGCTCGCGTATCGCCTCGCTCACGTATCCGA 21515 33 100.0 34 ................................. TCGGGCTTGTTGGAGGATGTCGCGGATGAGATTT 21448 33 100.0 36 ................................. TGCGGGGTGAGTCCGGCTTAAGTCTACCAAAGCGGC 21379 33 100.0 35 ................................. AAGCGCGACCGTGCAAAAGTATGCGGCGCAAGCGT 21311 33 100.0 34 ................................. GCGGCGCAGACCTGACCGGCGCAAACCTGAGAGA 21244 33 100.0 35 ................................. CTGGCCAACAGCGGCAAGCCGATGGTCAACGGGCA 21176 33 100.0 33 ................................. GACACCACCCGGGCACGCAAGACCAAGCACGTG 21110 33 100.0 35 ................................. TGCGATGCTGTGTAGTTTTCGGTCAGGTTGCCGAG 21042 33 100.0 35 ................................. TCGATATCGGAACGACGACGTTCGGCTTCCTTACG 20974 33 100.0 33 ................................. ATCCTTGACCCCCTTGTCAAGCTCGCGGAATGC 20908 33 100.0 33 ................................. GGTTTGACGATCGGGGGAGTGACCACCGTGGCT 20842 33 100.0 33 ................................. CTCGCGAGGTCGGCGCGCATGGTCTCGGAGCGT 20776 33 100.0 34 ................................. GTCTCGAAATGGAGCCGGCCTTGGACGAACCGAA 20709 33 100.0 34 ................................. TGATTAGCAAAACGCAGATGACTGACATTGCCGC 20642 33 97.0 35 ................A................ TCCCCGGTGGGCTCGGAGGCCAGCAACTCCGCCAG 20574 33 97.0 34 .....G........................... CAGTGGATTAAGCAATAACTACTGGTACAAACGC 20507 33 100.0 35 ................................. TGGTCTCCAATCGTGATCTCCACGTCGTCGAAAGA 20439 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 71 33 99.2 33 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : AAATACGGTCAACGCGTGCAGAACAGCGTTTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATCTGGCGAAGATTATGGATGAGTCGCAAGACAGCCTGCGGTACTACAATCTTGGGGCGAAGTATTCTTCGAAGATTGAATATCGGGGAAGGCAGCGACATTTACCGGTCGATGGCGTGATGATGCTTTGACGCCGCATTGGCATGCGGCATTCGGCGGACTGGAGCGGTGTACGACGTGCGGAGATCGGCCGGTGCGAGCCTTGAGCTCTCATGAAGCACTGGGTCGTTCGCACCACGGTTCATGGCTTCTGAGGACGGTGTGTGTTCTTCTTGTCGTTTGATAACTCAAGAGTGAGTGATCTGCTGGCATATCGATTCAGCGGATTCGCATATCGGGGAAAATGCGGGTGAATCGTACGGTACAATTGATGCCGTGGAATGGGTGGAGTATCCATATTTTGAGATATGAAGTCCATTCTTGC # Right flank : GAAGCGCTGCTGAAGGAAGTCAAGGCCGTGATCGACAATCCGGACGCCACCGCGAAGGACGTCGCGCAGATGCTCAAGCGGATGACGGACTTCGAGTACGAGTATGCGACTCCTGATCCCGATCCTGACCCGGCCCCGGGTCCCGATCCCGACCCGGAACCGGACCCCGACACTCCCGGTACGGATGACCCGTCCAAGCCCGGAACCGGCGACACGGATACGGACAAGCCCGGCAACAAGCCCGGCGACGGAGCGGAAGACAGTGGCAAGACCAACGACAAACCCAAGCCTCCGCTGTCGGCGACCGGCGTGAACGTGACCGCGATATCGGTCGCGGTCATGGCGCTCGCCAGCGCTGCGACGGTGCTGCTGACCATCAAGCGCCGTAGGGGCTGAACATGACCGGTGCCGGAGAGTCCAATGCTCTCCGGCACCGTCATATGTCGAACTCCTGCATAGGGTACCTTAAATCAGCCTGATCTGATAGACTGTCTGCGGGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //