Array 1 107891-106414 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEM01000004.1 Salmonella enterica strain BCW_2628 NODE_4_length_344625_cov_3.09589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107890 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107829 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107767 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107706 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107645 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107584 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107523 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107462 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107401 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107340 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107279 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107218 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107157 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107095 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106992 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106931 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106870 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106809 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106748 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106687 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106626 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106565 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106504 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106443 29 96.6 0 A............................ | A [106416] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125577-124023 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEM01000004.1 Salmonella enterica strain BCW_2628 NODE_4_length_344625_cov_3.09589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125576 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125515 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125454 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125393 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125332 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125271 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125210 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125149 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125088 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125027 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124966 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124905 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124844 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124783 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124722 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124661 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124600 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124538 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124477 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124416 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124355 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124294 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124233 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124172 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124111 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124050 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //