Array 1 306986-307625 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019405.1 Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 306986 29 100.0 33 ............................. AGGCAAACGGCAGGTTGCGCGCCAGTTGAGCGC 307048 29 100.0 32 ............................. TTGCTTATTAATGAGTTTGCGGCGGTGTTAAT 307109 29 100.0 32 ............................. AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 307170 29 100.0 32 ............................. AGTACGAGGCACTATTCGGCAAGAAACCGCAC 307231 29 100.0 32 ............................. GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 307292 29 100.0 33 ............................. CAAACAGGGGGGGGCGACAGCGTACTGGGTAGG 307354 29 100.0 32 ............................. CGAGCGCGTAAGCTGCTGGCTGTGTCGGTCGC 307415 29 100.0 32 ............................. ACGAAACCAAAATCGACGCCGCGACAGCACCT 307476 29 100.0 32 ............................. AGGTTTCGACGCCTCGTAACAACATCATATAG 307537 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 307598 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTGGTTTTAGTTGCCAGATTGAAACCAGCGGGACGCATGAAGTGCGCTGTACGCCTAACACCTGGGTCACGGTTTCACCAAAAGTAAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCACTACTAATCTTACAGACGGCGTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGGTCATTATGTTAAATCGAAC # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 323786-324932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019405.1 Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 323786 29 100.0 32 ............................. CTGGCCGCACAGGAAGTAGCCGAAAAGGTGGT 323847 29 100.0 32 ............................. GTCAGCGAGAAACGCACGCCGACACACTCGCA 323908 29 100.0 32 ............................. GGCTAATGGTTATAGATATCCATGCGGGGAAA 323969 29 100.0 32 ............................. CGGACGTGTTCGCCATTCTCTCGCGTGCTGAG 324030 29 100.0 32 ............................. GGAATGGCATTTCTATCCCTTCGGCTGATTTT 324091 29 100.0 32 ............................. TCGGCCAGTAGATTGGCCGCGTAATTGGTGTT 324152 29 100.0 32 ............................. TTCAGCGCCGTGCCTGCGGTGCAGTTCGTTGC 324213 29 100.0 32 ............................. GCCACGAGGTGCTCCCGTTTGCCACCAACAGA 324274 29 100.0 32 ............................. GGATAACAATTACATAACAGGTGTGACAGACG 324335 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 324397 29 100.0 32 ............................. CCCAGACGGCTGAAAAATTAGGGCTGGCGCGC 324458 29 100.0 32 ............................. ACACGGCGGCGGCGCTGGGCCACTCCGAAGAA 324519 29 96.6 32 .....................G....... CTTGGATTGTGGCGCATCCTCCCACGTTGAGT 324580 29 100.0 32 ............................. TGTCCACGCCGACATGTGTTCCCCCAAGGTTC 324641 29 100.0 50 ............................. AGCCAGTTTGAGCAAATCCCGGATAATATCCGGTTATGTCGATTGACAAT 324720 29 100.0 32 ............................. AAAAAGTTAATCTAACCAGGTTAATTAATGAA 324781 29 100.0 32 ............................. TCTAAAACTTCCTGAAATTTACGCTCTAGTGC 324842 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCCC 324903 29 100.0 0 ............................. | A [324930] ========== ====== ====== ====== ============================= ================================================== ================== 19 29 99.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //