Array 1 27507-27778 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807678.1 Rothia sp. HMSC065C12 Scaffold129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27507 28 100.0 33 ............................ CAGCTTGGCGTCCGTTTATCCTCTCCCCTCTGC 27568 28 100.0 33 ............................ CCGGACTTTTCGGCAACCTGAGAATCACCAAAA 27629 28 100.0 33 ............................ CCAGCGCATCCCAGTTAGCCAGACATTCCGCCT 27690 28 100.0 33 ............................ CGTCACCCCGTACGACTCAAAGATTATTGAGGC 27751 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTGCTCCCCGCACGGGCGGGGATGAGCC # Left flank : TGGGCGCGTGTGTTGGAGTCGGGTGGCACTGGTCGTGCGACTATGGTGTTTCCGGCGGATAATGAGCAACGGCTTGAGTTTCGGGTAAATAATGCGGATTGGGAGCCTGTCGATTTTGAGGGTGTTAAGCTGATTTATCGTCCGGTGGTTCGTAAAGTTGTACCGAAGTCTGGGTGGAGTAAGGCGAGTAGGTATCGCCGTGCTCGTCGGGGTTAGGAGCAATTGTTTATCGTGTATTCTGGACGGAGGCTCTGGCTCCAAAGTAATCCTATTTTGCCGGTATAGGGGATAAAACCCCATGTCAGCAAGTGTGCTCCCCGCACGGGCGGGGATGAGCCCGCGGCGGTGGATGCGCTACCTGTCGAGGTGGCGTGCTCCCCGCACGGGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCACGGGCGGGGATGAGCCCACAAATGAGTGCTGAATCGTCTTTACCGGGTGGTGCTCCCCGCACGGGCGGGGATGAGCCCTTCTCTACGTCGATGAGGAAATCCTCGGTGAAGTGCTCCCCGCACGGGCGGGGATGAGCCCAGATGCAGGAGACTTCGCATCTGCAGCAGGCTGTGCTCCCCGCACGGGCGGGGATGAGCCCCTGGCGGCAGATACCACCTTCGAGTACCCGAAGTGCTCCCCGCACGGGCGGGGATGAGCCCGAACTTCAGAAGCTCCTCATCACTGGTATGTTGTGCTCCCCGCACGGGCGGGGATGAGCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGGGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.60,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28318-29369 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807678.1 Rothia sp. HMSC065C12 Scaffold129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28318 28 100.0 33 ............................ CAAGTCATTTTATACACCTGGCTTACTGAGTGC 28379 28 100.0 33 ............................ CTTTGGCTGAGCTTGAATACGATAGTCATAGCA 28440 28 100.0 33 ............................ CGCTAGAGATGGACAGGCCGAGGGTGGAGGCAA 28501 28 100.0 33 ............................ CCAGCCGCTTAACATCCGCCGCGCTCGTAGCGA 28562 28 100.0 33 ............................ CCGAACCTTATTGGCGGCGCGCTGCAGCTCATC 28623 28 100.0 33 ............................ CGCCGTGATGTTTTCGCGTGTCTCGGTCACCGT 28684 28 100.0 20 ............................ CAATAGAAGAGAACCATAGA Deletion [28732] 28732 28 100.0 33 ............................ CACAACCGGCGGGTTGCCGGAGTCTCTGGTAGC 28793 28 100.0 33 ............................ CAGCGCGTCCTTCGTACCGTCGGTACGCAACAT 28854 28 96.4 33 .............A.............. CATGTCCAAGCTCGGAACCGACGGAAAACCCAT 28915 28 89.3 33 ...T.......G..A............. CCAGTCCAGCCACTAGCCCACAGATAGCAAGCC 28976 28 89.3 33 ...T.......G..A............. CACGGTGGTCAGTGCGCCCTGGAAGATAGGCGA 29037 28 96.4 33 .............A.............. CTTTTACTTGAGAGTATGTGCTTGTGTGAGTTA 29098 28 96.4 33 .............A.............. CGAGGCGAAGCGACAGGTTATCACCGTCATATT 29159 28 96.4 33 .............A.............. CTCCGACAATATGGAGTGGGCTGCTCTGGCTCA 29220 28 96.4 33 .............A.............. CCACAAACCCGCTAGACCTTCACGCCCTCAACA 29281 28 96.4 33 .............A.............. CGCGGTTGTGGCGGTTGAAGACCTTGGCTGGAT 29342 28 96.4 0 .............A.............. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.4 32 GTGCTCCCCGCACGGGCGGGGATGAGCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCACGGGCGGGGATGAGCCCACAAATGAGTGCTGAATCGTCTTTACCGGGTGGTGCTCCCCGCACGGGCGGGGATGAGCCCTTCTCTACGTCGATGAGGAAATCCTCGGTGAAGTGCTCCCCGCACGGGCGGGGATGAGCCCAGATGCAGGAGACTTCGCATCTGCAGCAGGCTGTGCTCCCCGCACGGGCGGGGATGAGCCCCTGGCGGCAGATACCACCTTCGAGTACCCGAAGTGCTCCCCGCACGGGCGGGGATGAGCCCGAACTTCAGAAGCTCCTCATCACTGGTATGTTGTGCTCCCCGCACGGGCGGGGATGAGCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC # Right flank : CCGAATACTACCGCGACCGTCTTGCTAAGGCTTTGTGCTCCCCGCACGGGCGGGGATGAGCCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGCTCCCCGCACGGGCGGGGATGAGCCCAGAATGGTAGCTGTTCCAAAAATCCAGGCACCGTGCTCCCCGCACGGGCGGGGATGAGCCCGCAGAATCAAAAACACGCCGACGGACTCACACGTGCTCCCCGCACGGGCGGGGATGAGCCCCTATGCGCAGGGGGATACGCCCACCCCTCGTGGTGCTCCCCGCACGGGCGGGGATGAGCCCTAAACCCGCCTGCATTGACGGCTACTTCTTCCGTGCTCCCCGCACGGGCGGGGATGAGCCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGGGCGGGGATGAGCC # Alternate repeat : GTGCTCCCCGCACAGGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.60,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 565789-565332 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807679.1 Rothia sp. HMSC065C12 Scaffold146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 565788 29 100.0 32 ............................. TACGCCCTCTGCACCTATCGGAAAGTGCCCTG 565727 29 96.6 32 ............................G CCGGGCGCGTACCTCGTCTTCATGCTCTTTAA 565666 29 96.6 33 ............................A GCGTGTCAGGTGCCTTGCCATTCGGCAGTAGGC 565604 29 100.0 32 ............................. CGAAATTGGGTGCTAAGGGCAGGGAGTTCGAC 565543 29 100.0 32 ............................. AACTCAGAATAAAACCCTGATTGACTCGGTGC 565482 29 100.0 32 ............................. AGGCGCGCGCCTTCGCTGAGCGTGAGGCTCAG 565421 29 100.0 32 ............................. ATTTCACGCAGCTGGTCCCAGCTCACCGGCCC 565360 29 79.3 0 ..........C............A.ATAG | ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.6 32 GTTTTCCCCGTATGCGCGGGGATGAGCCC # Left flank : GGCAGTTTTCCCCGTATGCGCGGGGATGAGCCCATTGCCCCTTCTTGCTACGCTGGCCGCTCTTTGTTTTCCCCGTATGCGCGGGGATGAGCCCTGAGGGCTCTGCCAGTTGAGCTACATCCCCGCGTTTTCCCCGTATGCGCGGGGATGAGCCCTGCTCAGAGCTGGCGAGCGCGGCTATGAATCCGTTTTCCCCGTATGCGCGGGGATGAGCCCAATTGCTGATTCAGGCGCCCAGACGATAGACCGTTTTCCCCGTATGCGCGGGGATGAGCCTGTTCTGGGGTCGAGGAGGCTGTTCTATTGGGTGTTTTCCCCGTATGCGCGGGGATGAGCCCTGTATTCGGTGCCTCGACCGTCACGGTTCCGGGTTTTCCCCGTATGCGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC # Right flank : AGAGGTACCGGGCTGTGTACTTGCAGAAGTAGCTGGCGTGCGCCTAACCATTCATCCTCCGGTAGCTTTTGGCACCTCACCAATCCCGCGCCTCCTGCCCCTCGATGTCACCCCTAGTAAAAACCCCCGTTAAAAACACAGCCGGGGCCGTCTCGCACGCAGGCTCGAAAAGTGCGAGAATGGAGCAGAAAAGAAAACTACGAAAGAAGATACTTTCATGCTTATTCTCGTTGTGAACGCCGGTTCTTCCTCCCTGAAGTACCAGGTGCGTGACACCTCCCTGCCCGAGGCAGAGCAGATGCTGACCTCCGGCCTCGTCGAAAACATCGGCACCGACGTGCCCAACCACGAAGTCGCATTCGACATCATGTCTGAGAAGCTTGAGCCCGTCCTGGCAGGCCGTGAGCTGCAGGCAGTCGGCCACCGCGTGGTGCAGGGTGCAGAGAAGTTCACCCACCCCGCCCTGCTCACCGAGGAAGTTGTCCAGCAGATCGACGACC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGTATGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 566590-565951 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807679.1 Rothia sp. HMSC065C12 Scaffold146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 566589 29 100.0 32 ............................. CATAGACATTACCAATGGTAATACCGCTATTG 566528 29 100.0 32 ............................. GACTACCGCCAGACCCGCGCAAAACGGAATCA 566467 29 100.0 32 ............................. CAAAGCATTAGACCCACCACCCACGACCTTCG 566406 29 100.0 32 ............................. GCCACAAGCTGCTTGTCAGTAGGCTCTACACC 566345 29 100.0 32 ............................. ACTAACCACCCTTTAGGAGTCACCATGCGGCA 566284 29 100.0 32 ............................. ATTGCCCCTTCTTGCTACGCTGGCCGCTCTTT 566223 29 100.0 32 ............................. TGAGGGCTCTGCCAGTTGAGCTACATCCCCGC 566162 29 100.0 32 ............................. TGCTCAGAGCTGGCGAGCGCGGCTATGAATCC 566101 29 100.0 32 ............................. AATTGCTGATTCAGGCGCCCAGACGATAGACC 566040 29 96.6 32 ............................T GTTCTGGGGTCGAGGAGGCTGTTCTATTGGGT 565979 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTTTTCCCCGTATGCGCGGGGATGAGCCC # Left flank : CGCAAAGTTTTCCCCGTATGCGCGGGGATGAGCCCGCTCAGACCCCCCCCAACCAGCGGGGGACGGCGTTTTCCCCGTATGCGCGGGGATGAGCCCTGCTCCACCAGGCCAGGCTGTGCGAGAATCGAGTTTTCCCCGTATGCGCGGGGATGAGCCCTTGTCACCACTCTGACCAAACATGACAATTAGGTTTTCCCCGTATGCGCGGGGATGAGCCCACCGTGGTATCAATGGTGATAGTTTCGCCCGGGTTTTCCCCGTATGCGCGGGGATGAGCCCCGGCGCGCCGGTCACAGCCCACACGCCGCCCCGTTTTCCCCGTATGCGCGGGGATGAGCCCGCGAAGGTTGCGAAAGCCAAGAAGAAGGCCGCGTTTTCCCCGTATGCGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGTATTCGGTGCCTCGACCGTCACGGTTCCGGGTTTTCCCCGTATGCGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTTTTCCCCGTATGCGCGGGGATGAGCCCTACGCCCTCTGCACCTATCGGAAAGTGCCCTGGTTTTCCCCGTATGCGCGGGGATGAGCCGCCGGGCGCGTACCTCGTCTTCATGCTCTTTAAGTTTTCCCCGTATGCGCGGGGATGAGCCAGCGTGTCAGGTGCCTTGCCATTCGGCAGTAGGCGTTTTCCCCGTATGCGCGGGGATGAGCCCCGAAATTGGGTGCTAAGGGCAGGGAGTTCGACGTTTTCCCCGTATGCGCGGGGATGAGCCCAACTCAGAATAAAACCCTGATTGACTCGGTGCGTTTTCCCCGTATGCGCGGGGATGAGCCCAGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGTATGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 566750-567573 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807679.1 Rothia sp. HMSC065C12 Scaffold146, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 566750 29 100.0 32 ............................. GGGGCGGCGTGTGGGCTGTGACCGGCGCGCCG 566811 29 100.0 32 ............................. CCGGGCGAAACTATCACCATTGATACCACGGT 566872 29 100.0 32 ............................. CTAATTGTCATGTTTGGTCAGAGTGGTGACAA 566933 29 100.0 32 ............................. TCGATTCTCGCACAGCCTGGCCTGGTGGAGCA 566994 29 100.0 32 ............................. GCCGTCCCCCGCTGGTTGGGGGGGGTCTGAGC 567055 29 100.0 33 ............................. TTTGCGATTTCCACCTGTGAGGCGTGCACGGCG 567117 29 100.0 32 ............................. CCTGCTCCGATTTCGGCACGCACACAGAGCGG 567178 29 100.0 33 ............................. TTGAAGATGAGCCGGGCTGCTACGGCTATTTGG 567240 29 96.6 32 T............................ GAATCTTTTGAGCAGGAAGTGACCGGGCAATG 567301 29 100.0 32 ............................. CTTGATTCCTCACCAAGCAGTTCAACGCAACC 567362 29 100.0 32 ............................. CTCCACCGCAAGCGTAAGATAGCTCGTTGCTA 567423 29 100.0 32 ............................. TAAGTGGTGCTCATGATGTCTTTTCCTTTTCG 567484 29 100.0 32 ............................. ATGAGGTCTAGTAGGGGGTCGAATAGTGATGT 567545 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GGGCTCATCCCCGCGCATACGGGGAAAAC # Left flank : GGCAATGGGCTCATCCCCGCGCATACGGGGAAAACTGCCGCATGGTGACTCCTAAAGGGTGGTTAGTGGGCTCATCCCCGCGCATACGGGGAAAACGGTGTAGAGCCTACTGACAAGCAGCTTGTGGCGGGCTCATCCCCGCGCATACGGGGAAAACCGAAGGTCGTGGGTGGTGGGTCTAATGCTTTGGGGCTCATCCCCGCGCATACGGGGAAAACTGATTCCGTTTTGCGCGGGTCTGGCGGTAGTCGGGCTCATCCCCGCGCATACGGGGAAAACCAATAGCGGTATTACCATTGGTAATGTCTATGGGGCTCATCCCCGCGCATACGGGGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTCATCCCCGCGCATACGGGGAAAACGCGGCCTTCTTCTTGGCTTTCGCAACCTTCGC # Right flank : CACTAGCTGACAAGGCACGATACCCAAGCAAAGACCAAAAAATATTCAGTTTCCACACGTATACATATATAAAAGGGATGAGTAGACGATTACTCGTCTACGGTGACCCGCCGCCAGAAGCGGCCGGCCTTGACGCATCCAACGCCACATCCCCCAGCACCACCGAACCGGCAGCATCAGAGTCAGTGACTCCGCGTCCGTTTAGACTCTCCCCCGTGCCGGGGGCGAGTTGCGCCTCATACATCCGCACAGCCTCCGCACGGATATTACGTGCCGCATTCACGTCACGATCAATCCGCACACCACAGGCCGCGCACTCAAAGACACGCACGCGAAGGTCGAGCTTGGTTTTCGCTCGTGCTCCGCAGGCGCTACACATCTGAGAGGATGCAAAGAAGCGGTCAATAATCTGTACCTGTGAGCCGTACCAGCTGGCCTTGTATTCCAGCTGACGGCGCAGCGTACTAAAAGCGGCATCCAGAATGGACCGATTAAGCCCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCTCATCCCCGCGCATACGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //