Array 1 512839-511650 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOAX010000001.1 Cronobacter sakazakii strain H05 Cronobacter_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 512838 29 93.1 32 .T..........C................ CGAGAGGTAGTAAGCAGCTTCTGTAAGCTCAT 512777 29 93.1 32 .T..........C................ GAAACAGCCAATCAATGATGCCTACATCCGGT 512716 29 93.1 32 .T..........C................ CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 512655 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 512594 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 512533 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 512471 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 512410 29 100.0 32 ............................. TGAAGTTATCATGCCAACGCCATCTTGACGAT 512349 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 512288 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 512227 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 512166 29 100.0 32 ............................. GATTACCGCCATCTCGTCACGCAACTTTTCAT 512105 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 512044 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 511983 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 511922 29 100.0 32 ............................. CGCTGCAATGCATTCTCAGAGCTGATTTTATT 511861 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 511800 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 511739 29 93.1 32 ............C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 511678 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.1 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATTAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTAATATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 541170-539126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOAX010000001.1 Cronobacter sakazakii strain H05 Cronobacter_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 541169 29 100.0 32 ............................. CAATCGAGGAATTAGTGACTAAACAGGCAGCC 541108 29 100.0 32 ............................. ACATCTTCATCCTAGCCGGTAACTATCTGCAA 541047 29 100.0 32 ............................. CCAACTCAAACGCCGAGCCGATTCACGTATCT 540986 29 100.0 32 ............................. CCATTAACATCTATCAGCGCAAACATACCGGA 540925 29 100.0 32 ............................. GTTCGCGCAACTCAGCGAGCGGCGGCAGCCGA 540864 29 100.0 32 ............................. GCAGGCTCAGTGGTCAGAAGCTGAATGGTCGA 540803 29 100.0 32 ............................. CAGCCAGCGCCGGAAATAAACGTTCATATCGA 540742 29 100.0 32 ............................. AAACTGACTCTACAACACCTGGATACCTGGGT 540681 29 100.0 32 ............................. TGCTGCAAAAAGAATTACTTGGCACCGATGAT 540620 29 96.6 32 ......................G...... ATCCGCGGGGAGGAAACACTGACGGTACATAC 540559 29 100.0 32 ............................. CAGTCTCTGGCAACCTCCCAGCATTCGCTACT 540498 29 100.0 32 ............................. CGGTCCATTTTCTTACCAAAGCCGTATGTTTT 540437 29 100.0 32 ............................. GCGGCGGCTGGTGGACTTTGTTCGATAGGTGC 540376 29 100.0 32 ............................. CGGTTGCCGAACTGCTGGCGCTGCGGGAGCGG 540315 29 100.0 32 ............................. CAATTCTCCCGCCGCGGGTATACCGCGGCAAA 540254 29 100.0 32 ............................. CTGGTCAGCGTAAACGCCGCAAATACGACAAA 540193 29 100.0 32 ............................. GCAACTTTTAGCGCCGCATTCTCCGCCGCTAG 540132 29 100.0 32 ............................. TAGGGAATCAGCGCCAGCATTTTGCGCTTGTC 540071 29 100.0 32 ............................. AAGTGATAACAGTGCTATTGCCGTTTTTTGAA 540010 29 100.0 32 ............................. GCTAGTCAGGTCGTTGCCAGCTTCATGCCCTC 539949 29 100.0 32 ............................. AGCGAGACGGTCGCAGCGTGTAATCTACAGTC 539888 29 100.0 32 ............................. ACAACTGGCAACTGGTGGATATCGAGACCACT 539827 29 100.0 32 ............................. TGCGTGCCACGGGTAAGGAATACGCCAGCTTT 539766 29 100.0 32 ............................. GCAGATCCAGGTAACGTTGCGCTGGCGCTGGT 539705 29 100.0 32 ............................. AATGCGATCATCGATATCGGGCAGGCTGTCAT 539644 29 100.0 32 ............................. GTGTGAGACTTTTGCGCCGCCTAACTTGATCG 539583 29 100.0 32 ............................. CAGGAGATCGCCAAATCAACGCCCAGCCAGAC 539522 29 100.0 32 ............................. CCGCGGCGGTATTCCCTGCAGGCCTGGTTATT 539461 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTAACAGGA 539400 29 100.0 32 ............................. GCGCGACGTATCGCACCGTTGCGCAGGATACC 539339 29 100.0 32 ............................. GTTATCATCTGAATGCCTAAAATTGAGGAATT 539278 29 96.6 33 .C........................... AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 539216 29 93.1 33 .C..........T................ AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 539154 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACTTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAACTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAAGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTATTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 452387-454515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOAX010000002.1 Cronobacter sakazakii strain H05 Cronobacter_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 452387 28 100.0 33 ............................ CCGCAAAACTGGAGTGGGCCGCACAGGAGGGGT 452448 28 100.0 32 ............................ TGCCTGACCTGATGAAGGTGCGCGGCTCAATG 452508 28 100.0 32 ............................ GTCTCCGCCAGCGCGCCCCAGCCCTGCGCCGC 452568 28 96.4 32 .....................C...... CACTGATAGAGGCGCAGCTCGCGCATAACCTC 452628 28 100.0 32 ............................ TCTCCAGTGCCATCCTCAGCCCCGGCGCTATC 452688 28 100.0 32 ............................ AAAAACGTTTTGCCAGACCTGGCGGATGAGGC 452748 28 100.0 32 ............................ AAAACAATATGGCGAGCACGGCGGTTGCGGGA 452808 28 100.0 32 ............................ GTTGCCCGCTGGTCAAGAATTTTCAACGACAC 452868 28 100.0 32 ............................ ACCTGTTGCGCGTTCTGCGCGCGGGCCTGCGC 452928 28 100.0 32 ............................ AGGGAGGACACGCGGCGGCCGTCAACGTAGCG 452988 28 100.0 32 ............................ AGCGCGAGCTTGACATGTTAAATATCTAAGGA 453048 28 100.0 32 ............................ CCGCCGTCGCGCTGTTCTGCGCGGATTTCTCC 453108 28 100.0 32 ............................ TCCGTCCGATCGTTTAACGACTGGAAGGAAAG 453168 28 100.0 32 ............................ AGAGAAAGGTGCGAACGGCGTACCGGACAGGC 453228 28 100.0 32 ............................ CAGCGCTTCGGCGATAATCTTCTCGCCGCGCG 453288 28 100.0 32 ............................ ACCAGCTATCGACCGCGCCCACATCTGCGTCG 453348 28 100.0 32 ............................ GTTACGCCAAAATCAACGGGCGATAACTGCAG 453408 28 100.0 32 ............................ TTTGCCGGGATCGTCGCTCATCAGCATCATCA 453468 28 100.0 32 ............................ AGCTCCTGCTCACACGCCGACAGGTCGTCGTA 453528 28 100.0 32 ............................ ACACTATAGTCACCTAAATTCAGAGACGGTTT 453588 28 100.0 32 ............................ TATGGCTGCGACCGATATTGCAAAAATCGTTG 453648 28 100.0 32 ............................ CGTGCAGAACTGACCTCAACGCGCGCCGCGAC 453708 28 100.0 32 ............................ TGGCTGAATGCGTAGCTGAACGTTGTTCTCTC 453768 28 100.0 32 ............................ ACGTCAGCAACGGTAATTTCGCTATTTTTAAT 453828 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 453888 28 100.0 32 ............................ GTCGGCCCGCTGTAAATCAGGGTCCAGACGCC 453948 28 100.0 32 ............................ AGTTCGCGCACGAAGTCGGCTGTATAAAGCAC 454008 28 100.0 32 ............................ GCTGAGCAGATATCCGAAACTGACCGCCGTTG 454068 28 100.0 32 ............................ ATCTGTATCAGCCCAGGAACCGTAGTCGTCGT 454128 28 96.4 32 A........................... GGTGCGCTTAGTGCCCTGGACGGCCTCGATAT 454188 28 96.4 32 A........................... AGGATCACTCGATAAACGGCGGCGCAGACGTG 454248 28 96.4 32 A........................... TCCGATGCGGCTAAACAGGCGTATCAGGACAT 454308 28 96.4 32 A........................... AACAGCTCGGCGTCCTGGTAAATTCGTTCCCC 454368 28 100.0 32 ............................ AAACCTCGACCGCGATACTGGCAAGCTCGACA 454428 28 100.0 32 ............................ TGTAGGGGCGTACCCCTCCCGGCCAAAAAAAA 454488 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAATAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGTGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATTTTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 463226-465114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOAX010000002.1 Cronobacter sakazakii strain H05 Cronobacter_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 463226 28 100.0 33 ............................ AGAAACTCGGGGTTGCGCTCTCGGTGAATAACC 463287 28 100.0 32 ............................ TTCCGTGGCGAGGCTTGTTACACCCGGAAACC 463347 28 100.0 32 ............................ TGATGCAGCGCCGTCAGAGCGAGGCGGAACGC 463407 28 100.0 32 ............................ ATGGCTACGACCTGCGCCAGCGCGGACAGTAC 463467 28 100.0 32 ............................ GGAACGGCACTACCCGAGCAAAATGGCGGGAT 463527 28 100.0 32 ............................ GCGTGCTCATCAGACCAGAGCAGGCCACATAT 463587 28 100.0 32 ............................ GTAAGCCGCACCAGCACGGCCTTTTTATCGGA 463647 28 100.0 32 ............................ TGCCCATCCGGCACACCTTCGGCGAAGAAATT 463707 28 100.0 32 ............................ CTCTGCACCAGTGATGGAATTACCCATGGCAC 463767 28 100.0 32 ............................ TCGATCGCGTAATCGCGCGCGCGGTTGAGTGT 463827 28 100.0 32 ............................ GCGGATCACTTCGGTGGTTGGCGCGACGGCGA 463887 28 100.0 32 ............................ GCGTGGGGCTGGCGTTAAGGGGCAATGGCGCG 463947 28 100.0 32 ............................ TGGGTGTGTTTTGACAGGGACGCATTCGAACT 464007 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 464067 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 464127 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 464187 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 464247 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 464307 28 100.0 32 ............................ TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 464367 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 464427 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 464487 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 464547 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 464607 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 464667 28 100.0 32 ............................ TCTGGCGTTCGGTTTGCGGCGGTATCGTCCCA 464727 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 464787 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 464847 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 464907 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 464967 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 465027 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 465086 27 92.9 0 ........................-..T | T,G [465106,465109] ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGCTGGCGGAATTAGAGGCTACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACTGGTTCAGGGCTGGCGCACCGTGACGCGCGTGCAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCAGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCACAGCAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCTCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //