Array 1 275648-277262 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLZZ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 26172-1 NODE_2_length_457021_cov_13.5677, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 275648 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 275709 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 275770 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 275831 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 275892 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 275953 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 276014 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 276075 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 276136 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 276197 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 276258 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 276319 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 276380 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 276441 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 276502 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 276563 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 276624 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 276685 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 276747 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 276808 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 276869 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 276930 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 276991 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 277052 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 277113 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 277174 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 277235 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 293395-294871 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLZZ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 26172-1 NODE_2_length_457021_cov_13.5677, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 293395 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 293456 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 293518 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 293579 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 293640 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 293701 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 293762 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 293823 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 293884 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 293945 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 294006 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 294067 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 294128 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 294190 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 294293 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 294354 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 294415 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 294476 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 294537 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 294598 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 294659 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 294720 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 294781 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 294842 29 96.6 0 A............................ | A [294868] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //