Array 1 41617-44608 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVO01000004.1 Ligilactobacillus salivarius strain FJLHD14M6 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 41617 36 100.0 30 .................................... GATTTTCTTCATAACTATATATCCTCCTAG 41683 36 100.0 30 .................................... TACGACAATGGACGATTTATGCTATCGCAT 41749 36 100.0 30 .................................... TTGGACTTTGATAGGCTTATCTGTATTGAG 41815 36 100.0 30 .................................... TAGCCAACTGCGCAAAGGATTGTGCTGTTT 41881 36 100.0 30 .................................... GAGTGAGGTATTGCCATCAATTCGTAAACA 41947 36 100.0 30 .................................... CCTTTACTTGTGAATTGATGCAAGTCATAT 42013 36 100.0 30 .................................... TCCCTACTCGTGTGGTAAGCTGACAAACTC 42079 36 100.0 30 .................................... TTACTGAAATGGTTAGTGAAGGCATCAAAT 42145 36 100.0 30 .................................... AATTTGTATTGCTGTATTTTCTCCTCAACA 42211 36 100.0 30 .................................... AAATTAACTCAGATCAACGATATAAGCTTT 42277 36 100.0 30 .................................... TTTAAATTAGGAGAGTGACAAAACATGGCA 42343 36 100.0 30 .................................... AGGTGGAACGATCTACCAAACTGATAACGA 42409 36 100.0 30 .................................... TGCCACAACGGTTGAACCGATAGATAGTAA 42475 36 100.0 30 .................................... CATCGAAAAGTCATAACTGCCTTGCCGATG 42541 36 100.0 30 .................................... CGCCTGTTTCTGTATCGATTACTTTATCTC 42607 36 100.0 30 .................................... TACCACAGATTACCGATGAAGCAATGCAAG 42673 36 100.0 30 .................................... AGTTGAAACGGCAATTAATGCCGCACAATT 42739 36 100.0 30 .................................... TGATTAATGCAATTCCAACACCAACCGCAA 42805 36 100.0 30 .................................... CATTCCTTGCGTCATTGAACCTAGCAATCG 42871 36 100.0 30 .................................... TTCAAATACTTGTGATAGGGATAAGCTAAT 42937 36 100.0 30 .................................... TGACACAACTCAAACAAAAGATGGCGCCGT 43003 36 100.0 30 .................................... ATCTATTTTGAGTGTAATTATACTGGATAG 43069 36 100.0 30 .................................... TTAATTCTGGTGTTTACCTCGGGGTCTTCT 43135 36 100.0 30 .................................... TATGGATATTATTGATGTTTCTAATCGTAA 43201 36 100.0 30 .................................... CCATGAGTCATACTTAGCGTTATTTTGGCT 43267 36 100.0 30 .................................... GCGTGCTAACATGGCTGAACTATCTTCAAC 43333 36 100.0 30 .................................... GTGCGATACGTTCAGTAACATATCTGTGGT 43399 36 100.0 30 .................................... TAGCCGGGCAGTATAAACAAGCATTTTTCC 43465 36 100.0 30 .................................... ATATTTTTACTTGAGTTGCGAAGGGTTGCA 43531 36 100.0 30 .................................... TAGACTTTTGATAACCATTCTCGACCATGA 43597 36 100.0 30 .................................... AAACACTCCAAGTGTTCAAGCAGCTAGAGG 43663 36 100.0 30 .................................... AGTATTAATTTTTAACTTATTCATACCAAA 43729 36 100.0 30 .................................... CCTACTTCTTTTTTATTAATCGCATTATTG 43795 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 43861 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 43927 36 100.0 30 .................................... AAACTGTTTTATTAACGCATTAATGAAGAA 43993 36 100.0 30 .................................... CGATAAGATTGCAGAAATTACTAACTTGAT 44059 36 100.0 30 .................................... GAACCATTTACTTCATACGTGATGTTGGCG 44125 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 44191 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 44257 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 44323 36 86.1 29 ..........T.........T...A......G.T.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC C [44356] 44389 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 44507 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 44573 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 45 36 98.8 31 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTAGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //