Array 1 140648-139453 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUAE01000019.1 Parabacteroides gordonii MS-1 = DSM 23371 F592DRAFT_scaffold00014.14_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 140647 29 100.0 35 ............................. ATTATCATTCAATATAGATTTGACATTCCCTGACG 140583 29 100.0 37 ............................. TTGCTTTAAACATAAGGTTGACCTCTTTTGAAGATAT 140517 29 100.0 35 ............................. CTGTAATGTAAATAATCAATAACGGGTTGTACGGC 140453 29 100.0 34 ............................. AAGCTATTTTGACTTTCAACGTATGATTTAATCT 140390 29 100.0 37 ............................. CCGGCATGCAAGGCGATTAGAGAAATACGGTGTACAC 140324 29 100.0 36 ............................. CTATTTGCCCGAGATCATCTAATATGATCGGGTAAT 140259 29 100.0 36 ............................. GATAGTTCGCTGCTGTCCGGCTTTGCAGTTTAATAA 140194 29 100.0 35 ............................. CTATTGATCTTTCAAATGATATATAGTCCCGCATT 140130 29 100.0 39 ............................. TTACTCTCTGTGATCTTAATTAATTCTTCCATGATAATT 140062 29 100.0 36 ............................. CCAAGTTCGCTCAACTTTTTCCCCGCAAGGGTCAGT 139997 29 100.0 36 ............................. GAACAAAAGGAGTATAGGAGACTGTTATCTCCTGAG 139932 29 100.0 36 ............................. GCTATCAATCTCTGATTGAATTTCTGCCTTTCTTGT 139867 29 100.0 37 ............................. CCTTGAATCTGCCCGCAATAGCAGGAAGTAATACAAG 139801 29 100.0 34 ............................. CTCATAAGGCATATCAGATGTAGGTCCTTTAGGA 139738 29 100.0 34 ............................. ATAGACCAGGTTACTTTACCGGCTTCATTGTCTC 139675 29 100.0 36 ............................. TGTGTTTTTATCTGTTATGCGAGGAGCTCCAGGGGT 139610 29 100.0 34 ............................. TTACCTGGATTATCTTTTCTCGTATCATAATCAA 139547 29 100.0 37 ............................. ATGTATCGCGGGAAACGATGGATCCCGTAAAAGCCTT 139481 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 19 29 100.0 36 GTATTAATTGAACTTAGTAGAATAGAAAT # Left flank : CTTTTAAAATGTATTGGTAATGTATGTGATCTTAGTTTATGATTGTGGAGAAAAACGGGTCGCGAAGATGTTAAAACTTTGTCGGCGTTATTTGAACTGGATCCAGAATTCTGTCTTTGAAGGTGAGATATCCGAAGTTCGTCTAAAGGAGTTGATAATGCAGGCAGAAACCTTTATGGATAAGACCTGCGATAGTATCATTATTTTTAAGAATGCTTCAAAAGTGACAATGGATAAGCAGATTGTAGGTAAAGAATGCAGCTCTATTGATATATTCCTGTAACAATAGATATTTGTCGATCCTGTAATTTTTGAAATATACAGTGGTTGAAAATATGAAATAAGCTCTTTGACTTGTTGATTTATAGCTGTTTATGTGATATGTCGATCTCCAGTGTTTTTTATATTATTGGAGGTCGACATATTTTATCAGGAAAAATGGTTGTTTTTAAATTTTGAACTTATTGATATTTATAAGTTTATGTTTTTGGGACGATAAG # Right flank : AATTTTGAGCGTTTCGGTTCATCCGAGTACACTATGTATTAATTGAACTAACAAGTCTCAACTAATATAATATAGAATGAATTAAAATATGGGGTTTACAGCCTTAATTGTATCCCTCCCCAATTTTTTGTATCTTTGCCCCTCAAAGTAAAGTACAAAAGGCAATATGATCAGTTATTTACAGATAGACGGACTGACCAAGAGCTTCGGCGATTTGGTTCTTTTTGAGGATATTACATTTGGGATTGCACAAGGCCAGAAGGTGGGGCTTATCGCAAAGAACGGTACAGGTAAAACAACTTTACTGAATATCATTGCCGGGAAGGAGGATTATGATAGCGGGGCGGTTGTGTTCCGTAACGACCTGCGTGTCGGTTATCTGGAGCAGACACCGGTTTATCCCGAAGGACTGACTGTTCTTCAGGCCTGTTTCTATTCCCCGAATGAGACGGTTCGACTGATCGCTGAGTATGAAGAAGCGATGGCCAGTGACGATCATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGAACTTAGTAGAATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 124509-125064 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUAE01000010.1 Parabacteroides gordonii MS-1 = DSM 23371 F592DRAFT_scaffold00006.6_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 124509 30 100.0 35 .............................. GGTGTAACTGTTCCTTTGTTTTTAACAGCATAATA 124574 30 100.0 36 .............................. CACATACCAGCTGCGCCCCCCAAAGGGCCAACTTGT 124640 30 100.0 36 .............................. ATTCCGAGCAAGGCAGCTCTGATATGTCGCCTGTAA 124706 30 100.0 36 .............................. GGACTTTATCCTTTCCTTTATATACGCTGTTTTCTG 124772 30 100.0 36 .............................. GGGAAGATTGTACAGCCAGCAACTTGGAAATAGGTA 124838 30 100.0 35 .............................. TAAATAGCGGCAGACCCAGGGGCACGGCCAATCGC 124903 30 100.0 36 .............................. TCGATCCTACAAAGCCGATAACTTCCCCCTTTCTCA 124969 29 86.7 37 ..A....................-.G...C ATACTTAAAAACCGGAAGGTTCCAGGGATGAGGACAA 125035 29 76.7 0 ..C...........-A....AG..A..T.. | A [125055] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 95.9 36 GGTTTAATTGTACCTTAGTGGTATTTAAAG # Left flank : CCGGTAGGCTTGGGATATCCCAAACCTTCCATCCTTCTCCATCTTGTCAATAACCCCCAGCGCATAAATCACAAACCCATTACGCGCCACCCCTTTCCTGATACGATTAATTTCTTCCATACTCATTTCTTGTTTAAATTGATATTGGCATGGAATATAACAGAAAAAACGGGGGGATAGGTTCGGAAGATACCACTAAGGAACAATTTACTATGCAAATATAAAAAGCACCGGGACAAATTGGAGAATAAAACTTACAGGATATATTAATATAATGTATATTTGGAAGCTTTATTCTGTTTTAGTCGACTATAATGCAGAATAGCTGTCATCAACACAGTAGAAACATGTGATTTGGAGAGTATAAGAGGTAGATGATAGTTGTCGATCCCCAAGGTATTTCATACAATTGAAGGTCGACAACTATCATTGACAGAAAAGAAGGAACAAACAAGGCTAGGAGGTATTTAGAACAGGGGAAATCTATGGTTTCTATAAGG # Right flank : GTTTTTCATTATCTTTGTTTTAACGTAGTAATTAATAGGTAAACAACAATGAACGAACAACAGCAAAATCGTGTAACTTATATCATCTATTGTATCAATGCTTTTGCAGAGCGTTACAAGTTGAGTGCAAAGCAAGCTTTTGCCTATCTGCAACGTTTCAAAGGACTTGTTTTTTTGGATGAATGCTACGAGGCCGAACATCAACTTTCGCTAAGCGATGCTGTTGACGACCTATCTGTTATCTGTAAACGAAATGGAGGAGGATTGGGATGATAACACTTTATCACGGATCGAATGTTGTGATCGAATCTGTTTGCCATTAAAGAATTGTCGATCCCCAGGGTATTTCATACAATTGCAGGTCGACAACTTCAATTAGTAAAAACGAAAGACCAAACAAGGCTAGAAGATATTTAGAGCAGGGAATCTCTATAAATTTGATAGGGGGTTAATTAATTGTACCTTAGTGGTATTTAAAGTAATAATTCCGGATCGGCAAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAATTGTACCTTAGTGGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 125516-125872 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUAE01000010.1 Parabacteroides gordonii MS-1 = DSM 23371 F592DRAFT_scaffold00006.6_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 125516 27 100.0 37 ........................... TAATAATTCCGGATCGGCAAGTGCTATCGCCTGAGGG 125580 27 100.0 39 ........................... CACAGGTTATCTTCGACACTCTGCATGTATTTTTGTGGT 125646 27 100.0 38 ........................... ATGGTTACTATCATGCAACGTCTGCATGATGATGAGGG 125711 27 100.0 41 ........................... TCGATTGTAGCGACAAACGTTTCAGCCAATTTATTTGTGGT 125779 27 92.6 40 .............T.......A..... CAGATCGGACAGTAATTAGGTTGCAGAAGTTTCCAAAGGT 125846 27 81.5 0 .....................AA.TCT | ========== ====== ====== ====== =========================== ========================================= ================== 6 27 95.7 39 TTAATTGTACCTTAGTGGTATTTAAAG # Left flank : GTTCCAGGGATGAGGACAAGGCTTAATTGTACCAAGTGAAGATATATAGTTTTTCATTATCTTTGTTTTAACGTAGTAATTAATAGGTAAACAACAATGAACGAACAACAGCAAAATCGTGTAACTTATATCATCTATTGTATCAATGCTTTTGCAGAGCGTTACAAGTTGAGTGCAAAGCAAGCTTTTGCCTATCTGCAACGTTTCAAAGGACTTGTTTTTTTGGATGAATGCTACGAGGCCGAACATCAACTTTCGCTAAGCGATGCTGTTGACGACCTATCTGTTATCTGTAAACGAAATGGAGGAGGATTGGGATGATAACACTTTATCACGGATCGAATGTTGTGATCGAATCTGTTTGCCATTAAAGAATTGTCGATCCCCAGGGTATTTCATACAATTGCAGGTCGACAACTTCAATTAGTAAAAACGAAAGACCAAACAAGGCTAGAAGATATTTAGAGCAGGGAATCTCTATAAATTTGATAGGGGGTTAA # Right flank : TTTTTCAAACTTTTTCTAACAGCGAAACTATCTGTTAATCAAAGACAATTCTCTCTTCAAAGGGAGGAGCCATCCTTTATATCAACAAAAAAAGCAATAAATTCATAGGCCAGACCAAATATATGACTATATTTGGGAGAAACTTAGTATACTATTAACTTACTTAGATTATATCTATACCTTATATAATATATAACCTAAATATAATACCAGAATTACTATATGAGAATACATTTATCAACGAGCGCCAACAACGAACTCGTACCTTTCAATTACCAGCAGAAACTTCTTGGTGTATTGCATCGCTGGCTCGGAACAAACGAACTACATGATAAAATATCCTTATACTCCTTCTCATGGTTAAAGGGAGGAAAAAGATACAAAAATGGACTTCATTTTCCTTATGGAGCCAATTGGTTTATCTCTTTTTGTGAGGAGAATTATGTCAAGACCATAATAAATGCAATCATGGACTCACCAGATATGTTTTGCGGAATGAA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAATTGTACCTTAGTGGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //