Array 1 733-302 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQA01000136.1 Bacillus cereus strain FSL W8-0640 contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 732 32 96.9 35 .................T.............. ATAGATAACAAGGGGCTTGTTGGTGGTAAATATAG 665 32 96.9 34 .................T.............. TCATCTCTTTTGCAACAGACTTACATATTTCCTT 599 32 100.0 34 ................................ CACGATATCCGAAGAACGTTTACAACTATTTTAA 533 32 100.0 35 ................................ AGTTATACCAAATAAGTTTCAAGATAAAGACCTAA 466 32 93.8 35 .............A...T.............. GATTGACCCGGAAACAAAGCAAGCTCGTGTTGATG 399 32 100.0 33 ................................ CCGTTAACGAAAATATAAAAAGCATACGTGCCG 334 32 71.9 0 ....T.T..C........A..A.AG...G.C. | A [307] ========== ====== ====== ====== ================================ =================================== ================== 7 32 94.2 34 GTCGCACCTTATATAGGAGCGTGGATTGAAAT # Left flank : TCGTTATTTACGTAATGATTTAGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGTACAGCTAACAGTATTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGCCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCAGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTAGTGCATTCGCACCTGAATTTTAATATTTTTTATACAAATTTTCTTATTAAATAAAGAAATATGTATATTTTTGAATAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : TGGTAAGATGCTTGATAGTAAGTTAGTGTCTCTGCTGGAATAAGAGGACCTGTTTCAATTCATACGGCAACAAGTATTGATCCGATTGATATTACTAGTATGCAGATTACGGAAATTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAACACACAGTTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9634-9072 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQA01000136.1 Bacillus cereus strain FSL W8-0640 contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 9633 32 100.0 34 ................................ ACTACTACATATATGAACACATTTCAGGGAGGTT 9567 32 100.0 35 ................................ ATATCCCCAACCTAATTGCAACCTACTATAAAAGG 9500 32 100.0 34 ................................ TCCTTCAAAAGCTTGGTGAGAATACATACTTACA 9434 32 100.0 35 ................................ CACTTGTAAAAGCCCAACTCAACATCAACTCTAAA 9367 32 93.8 34 .........C.........T............ TACCTCGGGTTTATATTTATCTGGAACGCTCATA 9301 32 96.9 34 ..............G................. ACAACCCTTCCACTTCTTGGCCTGGCTGCCAAAC 9235 32 96.9 35 ....................A........... GGGTATCTTATCGCTATGACGGTCAAATAAACCCA 9168 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCGGACTTCACTAAC 9103 32 87.5 0 A........G.A.C.................. | ========== ====== ====== ====== ================================ =================================== ================== 9 32 96.5 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATCTAGTTATATATTAAAAGGTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCAAAATAAAAGAATTTTTAGTATTCAATATTTTTAAGAGTGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTGGATAGAGAGACAATATGTAGTGAATTTTATTGTAAATTACGACTCCATATATTAAGGGTATAATGAAACTATACATTTTTGTTAATCAGTTCGGTAATAGCTATGAAAATAAGGTCGAACATATTGGTATAAAAGAATAAGTTGATTTAGAAATCTCTTTAATTTATTAGGTGCGAATGTATAGCAAACATAAAATTCCTATTACATTCGCACCTAGAATTCTCATGCTTTATGATGGGGATTTATGATTTTTTATACAAATTCCTTTATTAAATAAAAACATTTATATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : TAGTAATGCTCTGGCTTTAAAACGCTCTGCAGTTTAGTAGATACTCAACTGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACGTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCC # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTCATATAGGTGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3679-4035 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQA01000193.1 Bacillus cereus strain FSL W8-0640 contig_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3679 30 100.0 35 .............................. GGGACACTTTTCCATAATTCCAATATTCCATGAAA 3744 30 100.0 35 .............................. AATGAGGTCAAACGGTGTCATTCACGGACATTTTC 3809 30 100.0 36 .............................. TCATGAGTTCGATAAACTTTTTAGCTCCGTCTCGGA 3875 30 90.0 36 .G....T.....................G. ATGTATAAAATCTTTGCTCCAAAGAATGTTGACCAT 3941 30 96.7 35 ..........G................... TTTAGCATGGACGGACTATATTTGTTTTTTAATGT 4006 29 83.3 0 ....-....C.TA...T............. | T [4017] ========== ====== ====== ====== ============================== ==================================== ================== 6 30 95.0 36 GTTTAACACTAACATAAGATGTATTTAAAT # Left flank : AGTCAACGATGTAGTCAATGCGGATATATTTGTAAAGAAAATCGTTGTACACAAGCTATGTTTGAATGTAAGCAGTGTGGATATAAAACACATGCTGATTATAATGCGGCGAAAAACATTTCCACTTATGACATCGAAAATATTATAAATAAACAATTAGCGGTACAAAGCAAATTGCATTCAAAAAAATGTATGGAAGAGTATATAGAAGAGTTAGGATACCTGGATTAATGTAGATAATTGAGTCCATATTAAATAATTTGGTGGATTTACACGCCATAAATGGAGAAGTAGCACATAAGAAATTTACCAAGTGCCAACACTCCGTAAGGTAGTATCAAATGTAAATAAACATTGATGCGTGGGCATTTTCATGCTCTGAAGGGTGTAACACAAAAACCGTTACACAATACATCTATTTGCTGGTAAAATAATGTTTAATATTCATCTTATCAGGTTTTTTCCATATTTGTTAAAGTATCTATCTGTATTTCATCGGG # Right flank : TGTTACGGTTACTAATTGTTCAGCACTCAAACGATAAGAAAGTGAATTTTATCAATACGAATTTTTTCTTTTACATATTAAAATGGAAGGCCCATTTCAATGTATACTGAACCCTTCACAAATCGTGAAGGGATTTTTTTATTCAATAAACGAGTTTTACAAAAGATACAAAATGTTAAACTCATAAGAACCAGTGATATCATGCGTTTTTCTATGGTATTACTGGTTTTTTTCGCTATAAAATGAAAAGAAAAAGATTGTAAGTTTAACAAATTATAGTTATAGTTAAACTAAGTTTTACATATTATAGCTTACAACATAGGTTTAGGAGGTCATGTTTTATGACGAAAGGGGGACGAAAACCTGGGGCAAAAGAGCCAATTCGTTCAATAGAAAAAATTGAAGAAATGAAAGATTGGCTTTTGCAAAATTCCTCATATCGAAATTACTTTTTATTTTATTTTGGAATTAACACAGGTTTACGCATTAGTGACATTTTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACACTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //