Array 1 16136-14970 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWKQ01000030.1 Specibacter cremeus strain C1-50 contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================== ================== 16135 29 100.0 32 ............................. GCTACGCTGAAGCCAGTCTTCGATGCGATCTT 16074 29 100.0 32 ............................. TGCCGCCGATCTCGGAGAAGCGCCGCCTGTCC 16013 29 100.0 32 ............................. TCGAACCTGACGCTGGCCGCAACCGTCCTGTA 15952 29 100.0 32 ............................. ATGTCCGTCGCGGTCAGCTCGTTGTTGGCCTG 15891 29 96.6 32 ............................G CGCCTGGGGGGACAGATACGGGGGTGCGTAAG 15830 29 100.0 32 ............................. GGGTTGACGATCCCGCCCTTCGCGAAACCCTC 15769 29 100.0 32 ............................. CCTCTGGGGCGTCACTGCTGAGTCGCTGGACG 15708 29 100.0 32 ............................. CTCAGCGTGGTCGTCGACTCGCTGACGTGCCC 15647 29 96.6 32 ............................T GAGAAGTCGCTGGCGGACGCTCGGGCAACGGC 15586 29 96.6 32 ............................G TACCGCGCCTGGGACACCGAGTCCCCGATCTC 15525 29 100.0 32 ............................. TCCAAGGAACCCCGTGCATCCCCCTGGAGGAA 15464 29 96.6 69 ............................G GACGGGTGCACCGTCGCCGTATACTCCGGCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 15366 29 69.0 33 NNNNNNNNN.................... ACCGGTCGCACCCCAATACCCGCTGGTGAGGTT 15304 29 100.0 32 ............................. AAGCGTGGCGAGCAGCAAGCGCCGCCACAGCA 15243 29 96.6 32 ..T.......................... GCCTCGTCGATGCTGTAGACCTCGACCCAGGC 15182 29 100.0 32 ............................. ATCGGCACCGTGATCCCGGCCAACATGATCAG 15121 29 93.1 33 A...........................A GGTCAGGGTTGTCATGGTCGCTCATTTCCATGT 15059 29 96.6 32 ............................T TCGGGTAGCCGGCCGCGACGGCGGCGAAGTCC 14998 29 89.7 0 ..........T................TA | ========== ====== ====== ====== ============================= ===================================================================== ================== 19 29 96.4 34 GTGTTCCCCGCGATCGCGGGGATGAGCCC # Left flank : TGCTGGCCGAGATCAACCGTGTCGCCCACCGTGCCCGGGATGCCGGCGGGACAGCGTTCGCCCCCGCCCTGCTGGCGACGTATCGGCGACGATACGAAGCCCTCATCAAGGCCGGGTGGGCGACAAACCCCGGGTTCTCCCCGGGCAAGCACGCCACGAAACGGCCCAAGCACGTGAACCTGCTCGACCGCCTCGACGGCCACCGCGAGGAGGTGCTGCGCTACGCCACCGACTGGCGGGTCCCGTTTTCGAATAATGGGTCCGAGCGTGACATCCGGCCGCTGAAGATCAAGATGAAGGTCTCCGGCGGGCTACGCAGCATGGCCGGCGCCGACGCGTTCTGCCGGCTGCGCTCCTACCTCTCCACCGCCGCCAAACAAGGCCAAACAGCGTTCGAAGCGATGACCATGCTCCACAACGGCAACCCCTGGCAACCAGCCACCAGCTAAAACCGCCACCGCGCCCACGAAACCAGCTGAGCAGTTACCCCTGCCGGCCGG # Right flank : GGGTGGCTACCGCCAGAGCCGCTTCGTGGCCAGTTCGGCGCCCCGGCCCAGCGCCTCGAGCTTGGCGACCGCGATCTGCGGATGCACGCGCCCGCCCAGGCCGCAGTCGGTGGACGCGATCACGTTCTCGCGGCCCACCAGCCGGGCGAAGCGCTCGATCCGGTCGGCCACCAGTTCCGGGTGCTCGACGACGTTCGTGGCGTGCGAGACGACGCCCGGGATGATCGACTTGCCCTCGGGAAGTTTCGTGTCCTCCCAGACCCGCCATTCGTGTTCGTGGCGGACATTGCCGGCCTCGAACGAGTAGGCCCCGGCGTTGATGGCCAGCACCTGGTCGAGGATGTCGGCGAAGGGGATGTCCGTGGTGTGCGGCCCGTGCCAGGAACCCCAGCACACGTGCAGGCGGATCTTGTCCTCGGGCAGGCCGCGCAGCGCGTGGTTGGTGGCCTCCACACGCAGCTGGATGAACTTCTTGTAGTCCGCCAGGGCCGGTTCCGGGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGATCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21674-21461 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWKQ01000030.1 Specibacter cremeus strain C1-50 contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21673 29 96.6 33 ............................T ACAGATAGGATCCAACCCATGTTCACCTTTGAC 21611 29 100.0 32 ............................. ACTCCCAGCGCTTCCATGAGAATACCCAAGGC 21550 29 96.6 32 ............................G TCGGTATTTTCGCGTTGTAGTAAGCCAAGTGC 21489 29 82.8 0 .......................TGTTA. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.0 33 GTGTTCCCCGCGATCGCGGGGATGAGCCC # Left flank : GTTCCCCGCGATCGCGGGGATGAGCCTATTGATGCGGCAAACACAGCAAGAACAACCCACGTGTTCCCCGCGATCGCGGGGATGAGCCCGCAACGCACCCACCGCCGAAGAGCTTGACGAAGTGTTCNNNNCCCGCGATCGCGGGGATGAGCCTCGTAGGCCTCCCGCATGGTGACCAGCATGTTTGTGTTCCCCGCGATCGCGGGGATGAGCCCCAACATCCACCCCCGAGAGGACCCCAGCCATGGTGTTCCCCGCGATCGCGGGGATGAGCCCGCCTACCATGTGGACCTGATCCTTGATGAGGTGTGTTCCCCGCGATCGCGGGGATGAGCCGGTTGTGGGCAAATCCAGGGTGAGTGCCCCGGCGTGTTCCCCGCGATCGCGGGGATGAGCCGGTTTGGAAACAGCGCCGGCTGGCCCAGTGGGTGTGTTCCCCGTNNNNNNNNNGATCGCGGGGATGAGCCTCGGTAACAGACAAGCTTGGCATTCCGAGAGGA # Right flank : CCGTCGCGTTATTTGACGATGTAGGCGTCAACCAGGATGCCGATGGCCGGGGTGTGAAAACGCCCCGCCGGGGGTTCCTGGCGGGGCGTTCGTTGTCATGGTGACGTGGCCACCGTCATTGGTGCCGGGATTGTGGTTATTCGTTGGATTCGCTGATGGCCGATTGTGCTGCGGCTTGGTCGACCATGTTCTTCTGTGCGGAGTAGGCGGCGAGCAGGGCGGAGACCGCGAGGTTGTTCACGGAGCGCGGGTAGCCGCGTGAGGCGTGGTGGATCGCGCTGATGGCGTCGTCGGAGAAGAGCGGGTCGGATCTGCCGGCGTAGGCGAGGTGTCCCTTGATGTAGTCGGTGGTGTCTTCCGGTCCCATTCCGTTGATTGTGAACCGGGTGCCGATGCGCTGGTCCAGGGCGGCCAGCACCGCTAGTTTCAGGCGCCGTCGCAGGGTGGGCTGGCCGATGAGCAGCAGCGCGAAGTGCGAGACCGTATCGAGATTGACGTTC # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGATCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 26022-21776 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWKQ01000030.1 Specibacter cremeus strain C1-50 contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 26021 29 100.0 32 ............................. TATCCACACAGGCGCCGGGGCAGACTCGCGAG 25960 29 100.0 32 ............................. TCGGGGTCGCGCGCGGGTGCGAGGCACGTCGC 25899 29 100.0 32 ............................. GGCTCTCCGCGCGCGGCTTCGTCCCACGCCGC 25838 29 100.0 32 ............................. GACTGACCCACTACCTGAAGGATCGCACCATG 25777 29 100.0 32 ............................. GTGTCGGTGAATTGGCCGCCGGTGATGGGGAG 25716 29 100.0 32 ............................. ATCACCGCACCTGTCGCCACACCTCAGGTCAA 25655 29 100.0 32 ............................. AGCGTAAAGGCGACGAAAACAGAACGTCTTGA 25594 29 100.0 32 ............................. GCCGTAGATTACTGGGACACGGCGTTCCACTT 25533 29 96.6 32 ............................G TGTGCACTTGTGGCGCGACGTGCTGCGAAGAT 25472 29 100.0 32 ............................. CTCACGGACACCGGCCACGGTCCCGGACCGGT 25411 29 100.0 32 ............................. GATTCGACGTGCCCGCTCGCGTTGTAGGCCAG 25350 29 100.0 32 ............................. CTGATCGCCTCGCAAGGCATCCCGGCCGAGGT 25289 29 100.0 32 ............................. CAGATGATCCCACGCGCGCCCCCGATGACAGC 25228 29 100.0 32 ............................. GACTGCCAACCATCCGGAAATCCCGGACGGTT 25167 29 100.0 32 ............................. GGCGGTCTAGGGCCGTTCCGCTGCGTGTGCGG 25106 29 100.0 32 ............................. CGGATGGTGTCACCCTTGCGGATGTCCTCGAA 25045 29 100.0 32 ............................. CTGACGACTGGTTGGTGGGGTGCGACCAGTGT 24984 29 100.0 32 ............................. GTCGTCAACGGTGATCTGATCCTGATCCTTGG 24923 29 100.0 32 ............................. GACCAGTGCCCGGCACCGCCGGCCTCGGTGCA 24862 29 96.6 32 ............................T ACGCCTCCTGGGAGTGGGTGCCCGCTCATTGT 24801 29 100.0 32 ............................. AGGGCGACGACGATGGCGATGGCCGCCTCGAC 24740 29 96.6 32 ............................T GTGACGGCCAGACCGCACTTGCCGCAGTGGAG 24679 29 96.6 32 ............................T CCTGGGCGTCCGCGCTGAACGGCCCCGACGCC 24618 29 100.0 32 ............................. CAGTACACGTCCGCGCTGACAACATCGATGGG 24557 29 96.6 32 ............................G CACCCTCGTCCGCGACCACGGTTTCGGGCTTC 24496 29 96.6 32 ......N...................... TGCACGCCGCCCTCGCCCTCGCCTACGAGCAG C [24491] 24434 29 100.0 32 ............................. GCCCAACACCAGAGGGCCCTTTCGCTCGACCA 24373 29 100.0 32 ............................. TCGCGCAGCGCGGTCACGGACGGCACCACCCG 24312 29 100.0 32 ............................. GCGAAATGGCTGACGGCACCACCGTCGGCAAC 24251 29 100.0 32 ............................. GCGTGGCGATCTCCTCGCGCTCCACGTCGCGC 24190 29 100.0 34 ............................. CCCTCCATCGGTTCCTGCGCGGGTGATTCGTCCN 24127 29 100.0 32 ............................. AAGAAGTTCACGGATAACAAGATCCAGCGCGG 24066 29 100.0 32 ............................. AAGGCCCGTGGTGACAGGACCGCGTCCCCGGA 24005 29 100.0 32 ............................. CGAATCTTGAACGCGATTGAAGGGAAGTAACA 23944 29 96.6 32 ............................G TCGTGTTTTCGCACGCGTAGTAAGCGATATGC 23883 29 100.0 32 ............................. GGGATGGTGGCATCTCCACGGGATCGGGTGTT 23822 29 96.6 32 ............................T CTGACAGAATGTAGTGCGCTGCCCCCGCGCTT 23761 29 100.0 32 ............................. TCGCGCACGGCCGTCACGGCGACGGCGGGCGT 23700 29 100.0 32 ............................. ACGCCGGCTACTACTTTTGGAACGCCTGACCA 23639 29 96.6 32 ............................G TAGACGTACGCGAACCAGACTTCAGGCTTGAC 23578 29 100.0 32 ............................. CAGCCGGTCCCGGTGACGTCGAAACCGATGGC 23517 29 100.0 32 ............................. GTGCTGCTGGCGATCGGCCTCGGCTCCGCCAT 23456 29 100.0 32 ............................. AACTGCACCGAACAGCGGTGGCTGGGTCGCGT 23395 29 100.0 32 ............................. AACACAATTCTCCGGGCCTATTGTCGTCACCA 23334 29 100.0 32 ............................. TTCGGCCCAATCTTCCCCCGTGTCCGTGGTGC 23273 29 100.0 32 ............................. ATTCCGCTCATGATTACTTCCCCTTAGATTCG 23212 29 96.6 32 ............................G TCGTCCGAGTCATACGAGTACTCATCTTCAAA 23151 29 100.0 32 ............................. GGCAATGAGTTCGACGCTGAGCAACTTGGGCA 23090 29 100.0 32 ............................. ATCGATACCTTCATCGGGCAGAAGTTTCTCGC 23029 29 100.0 31 ............................. CCCCGCCCTCTGATAATCCTTCACAATGAAC 22969 29 96.6 32 ............................T TTAGCGATCGCATTGTCCATCACATCCTTGAT 22908 29 100.0 32 ............................. CCGTGGAACTCCACACTGTCCGGAATTTCCCA 22847 29 96.6 32 ............................G ACGAACCCATCGCCCGGAGCGCCGCGTAATGT 22786 29 100.0 33 ............................. GGAACAATTGTCAGCGGAATGAGAAACGGCACA 22724 29 100.0 32 ............................. GCCCGGCGCCGATCCGTCCGCAACGCCGCCCG 22663 29 96.6 32 ............................G TAACCGTACGGCTAATTGCAAGTACAGGCCTG 22602 29 100.0 32 ............................. TAGGTTCACCATATGGGAACTTATGGAGACGA 22541 29 100.0 32 ............................. GGCCGGGTCCGCGCCCACGATGCGCGGGTAGT 22480 29 96.6 32 ............................T ACCAAGGCGTCTGGCGCCAGCTCGCGCATGTG 22419 29 100.0 32 ............................. GGTACGCCGCCAGCATCGTCGCCGCGCAGGCG 22358 29 100.0 32 ............................. CTTGAGGCGGTGGCGGCGTGATGGCCGTGGAC 22297 29 100.0 32 ............................. ATTGCCCCATTGAGCTTGAGGTTGGCCATGTC 22236 29 96.6 32 ............................T ATGCCGCAAGAATCGCAATTCTCGGCAGAAAC 22175 29 96.6 33 ............................T ATTGATGCGGCAAACACAGCAAGAACAACCCAC 22113 29 100.0 36 ............................. GCAACGCACCCACCGCCGAAGAGCTTGACGAAGTGT 22048 29 75.9 32 TCNNNN......................T CGTAGGCCTCCCGCATGGTGACCAGCATGTTT 21987 29 100.0 32 ............................. CAACATCCACCCCCGAGAGGACCCCAGCCATG 21926 29 100.0 32 ............................. GCCTACCATGTGGACCTGATCCTTGATGAGGT 21865 29 96.6 32 ............................G GTTGTGGGCAAATCCAGGGTGAGTGCCCCGGC 21804 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ==================================== ================== 70 29 98.8 32 GTGTTCCCCGCGATCGCGGGGATGAGCCC # Left flank : ACGTTGTTCAGCTCTGGGACCCGGACCTCGGCCAGGTTGCCAGCGGTCAGAACTACGCCCAGGAGGACGAGCCGTGGTCGTGATTGTGGTCTCGGCCTGCCCGGAGGGATTGCGTGGTGATCTCAGCCGATGGCTTCTGGAGATAAGCGCAGGCGTCTTCGTCGGACGTGTCACGGCACGGGTCAGGGATCTTCTGTGGGAGCGTGTCATTGAATTGGCCAAGGATGGTCGCGCCATCATGGTGTTTTCGGCCAAGGACGAGCAGCGCCTGGACTTCAAGGTTCACAGGAATCACTGGGTACCCGTCGACATGGACGGCGTGAACCTAATCCTTCGACCGGCGGCGAAGAAGGAGGGTGACAAGACCGGGGAACTGCGCCCGGGTTGGAGCAACGCGAGCCGGTACCGGAAAGCGGCAAGGCGAAAGTCTCCGAGTTGACGCATAGAACAAGTTGAATCTGAACGGCCCCGTTTTCGGGTATCGTTGCAGGTCAGGAAGT # Right flank : GTTTGGAAACAGCGCCGGCTGGCCCAGTGGGTGTGTTCCCCGTNNNNNNNNNGATCGCGGGGATGAGCCTCGGTAACAGACAAGCTTGGCATTCCGAGAGGAGTGTTCCCCGCGATCGCGGGGATGAGCCTACAGATAGGATCCAACCCATGTTCACCTTTGACGTGTTCCCCGCGATCGCGGGGATGAGCCCACTCCCAGCGCTTCCATGAGAATACCCAAGGCGTGTTCCCCGCGATCGCGGGGATGAGCCGTCGGTATTTTCGCGTTGTAGTAAGCCAAGTGCGTGTTCCCCGCGATCGCGGGGATTGTTACCCGTCGCGTTATTTGACGATGTAGGCGTCAACCAGGATGCCGATGGCCGGGGTGTGAAAACGCCCCGCCGGGGGTTCCTGGCGGGGCGTTCGTTGTCATGGTGACGTGGCCACCGTCATTGGTGCCGGGATTGTGGTTATTCGTTGGATTCGCTGATGGCCGATTGTGCTGCGGCTTGGTCGACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGATCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //