Array 1 218466-217764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUM01000029.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N30642 N30642_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218465 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 218403 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 218342 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 218281 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 218220 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 218159 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 218098 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 218037 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 217976 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 217915 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 217854 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 217793 29 96.6 0 ............T................ | A [217766] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16628-15197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUM01000023.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N30642 N30642_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16627 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 16566 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 16505 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 16444 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 16383 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 16322 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 16261 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 16200 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 16139 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 16078 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 16017 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 15956 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 15895 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 15834 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 15773 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 15712 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 15651 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 15590 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 15529 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 15468 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 15407 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 15346 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 15285 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 15224 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //