Array 1 36656-38242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUD010000006.1 Riemerella anatipestifer strain 20180317E1-2 NODE_6_length_144774_cov_294.255071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 36656 47 100.0 30 ............................................... GGGAGTGTAGTGATAGGACAAGGGGCAGTG 36733 47 100.0 30 ............................................... GGGCTGGGGGCACTGCGTGCAGGGGACAAG 36810 47 100.0 30 ............................................... GCACCTATGTGGCATGATACAGAAGCTAAT 36887 47 100.0 30 ............................................... TACGTTCCACCGCTTTTCTTTTTAAATCCC 36964 47 100.0 30 ............................................... GCATGATCCCAAGCTATGTACGCTCCTGGA 37041 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 37118 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 37195 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 37272 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 37349 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 37426 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 37503 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 37580 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 37657 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 37734 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 37811 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 37888 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 37965 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 38042 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 38119 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 38196 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 98.5 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //