Array 1 63626-61109 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCK01000022.1 Moraxella catarrhalis strain 5553245S 5553245S_NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63625 28 100.0 32 ............................ ACATCAAGACGACTAATTGTCTTAAACGGTTC 63565 28 100.0 32 ............................ CACCGTTCATATGTACTTTGCCTGCTTCGATG 63505 28 100.0 32 ............................ AATAGATAATTTATAAACTGGTTCATTTTGAT 63445 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 63385 28 100.0 32 ............................ ACCAAGAACAATGACTTCACCATTTTCAGATC 63325 28 100.0 32 ............................ ACCAAAGTCGGCTGATGATGTGGGGGTTTATT 63265 28 100.0 32 ............................ ATTTCATCGTACACATCACAGACCAGCCAAGT 63205 28 100.0 32 ............................ GTGACTGCAAATACTGAAGCAGGTGATGAATT 63145 28 100.0 32 ............................ ATAGTCTTCCACTGTAGATTATCAGGAAGACT 63085 28 100.0 32 ............................ CTGAGCAATCGCAATAAAATCTGCTGTATCGC 63025 28 100.0 32 ............................ TTGGTACCCCTCGCCGTCAGCCGAAATTATTT 62965 28 100.0 32 ............................ ATAAAATTTATTATCATCATTTTTTTTATATC 62905 28 100.0 32 ............................ TTGGTACCCCTCGCCGTCAGCCGAAATTATTT 62845 28 100.0 32 ............................ ATAAAATTTATTATCATCATTTTTTTTATATC 62785 28 100.0 33 ............................ CAGAGCCTGACAGCTTGACCCGTGCATTACCTA 62724 28 100.0 33 ............................ TCCAGTCGCTCAGTAGCGAGTTAAGTTAATTGC 62661 26 92.9 1 ..........................-- A Deletion [62636] 62638 28 100.0 32 ............................ ACCGACCCGCTGTTGATATTACTTTTTCAGCA 62578 28 100.0 32 ............................ ATAAGGCTACCGCTCCACACCCATTCGGTCAT 62518 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 62458 28 100.0 32 ............................ CTGCAAATCCTCTGGAGCTGCTGTCCAGTCTG 62398 28 100.0 32 ............................ AAAATAAATGGCTTCTGTAGCGTTAAATCGCT 62338 28 100.0 33 ............................ ACTTACTGAGCTTTCAACAGTATTAATCCGTCT 62277 28 100.0 32 ............................ AGAATACTATGACCAGATGAAGCTCATTATGA 62217 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 62156 28 100.0 32 ............................ ATCGGTCGGTCATGGCGGTAAGCTAATTTTGG 62096 28 100.0 32 ............................ TGTTGATACCTTACGCCTAGAATTCCCCAACG 62036 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 61975 28 100.0 32 ............................ AATATCAATATCATGTACAGTTTTCATTAAAT 61915 28 100.0 32 ............................ TAGGCAATGAGCCTGAAGTCAAAACATTCACC 61855 28 100.0 32 ............................ ACTGTAGATTATCAGGAAGACTGGGTAATGTT 61795 28 100.0 32 ............................ CACACACGCACATCATTTCAATAGATTTTATT 61735 28 100.0 32 ............................ AATCATACTTGAGCAATACGAAAACAAGAAAA 61675 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 61615 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 61555 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 61495 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 61436 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 61376 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 61316 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 61256 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 61196 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 61136 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 43 28 99.8 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //