Array 1 53-1157 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWO01000041.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_2875 NODE_41_length_12399_cov_2.87114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================== ================== 53 29 100.0 32 ............................. TTTGCTGATAACGGAGGCCGAGTAGTCACACA 114 29 100.0 32 ............................. TTGAGGTAACCGTCTTGGGGTCTAGCGAGCAG 175 29 100.0 32 ............................. TTGATGTAACCGTCTTGGGGTCTAGCGAGCAG 236 29 100.0 69 ............................. CGGCCCGTGAGGCTGCAATTAAGGCGGGGATAAACCGCCGTGCCCCTGTGTGGGTTGTGCTACCGCGCC 334 29 100.0 32 ............................. TTGATTTCATCTATTTTGCACAATCTAAGAAA 395 29 100.0 32 ............................. TGTTCCGGTTTAATAGCATCCGGCAGCATCTT 456 29 100.0 33 ............................. GGCTCAACAACAAGTTTCACCTACAATTTTCTG 518 29 100.0 32 ............................. CCAACGGCAATTATGAGCACAAATTGCTAATT 579 29 100.0 32 ............................. GCATTGATTTAGCGTTGGGTGTGGATTATTTG 640 29 100.0 32 ............................. AACGGCCTCAGAGTTTCCCGTCGTCTCTTTTG 701 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 762 29 100.0 32 ............................. CACACCCCAGACGGATCGGTGATTGTTGAAAG 823 29 100.0 32 ............................. GGGCTGTTAGCGCAGCGCATCATGAATCTGTC 884 29 100.0 32 ............................. TCCCCAGAAACGTTCGCCGAAACGTTCCCGGA 945 29 100.0 32 ............................. AACGGCCTCAGAGTTTCCCGTCGCCTCTTTTG 1006 29 100.0 32 ............................. TTCAAACTCGATCACGGCGAAACCGTTCACGA 1067 29 100.0 32 ............................. GAAGTGGAGAGTCGCTGGAAAATGCTCATAAA 1128 29 96.6 0 ............T................ | A [1155] ========== ====== ====== ====== ============================= ===================================================================== ================== 18 29 99.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCCAGCGGGGATAAACCGTTTGCTGATAACGGAGGCCGAGTAGTCACACAG # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 266-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWO01000003.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_2875 NODE_3_length_236660_cov_3.26495, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 265 29 100.0 32 ............................. CTATCCAGAGTGGTGGCGCGGTTATCGCGCGC 204 29 100.0 32 ............................. CGTTCCAGGCTGAATTGATGGATGGGGCAAAT 143 29 100.0 32 ............................. CAATGATTTTAGCGGAAAGGCAATAAGTTTGT 82 29 100.0 32 ............................. CAATGATTTTAGCGGAAAGGCAATAAGTTTGT 21 21 72.4 0 .....................-------- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAGCCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : G # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17100-16401 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWO01000003.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_2875 NODE_3_length_236660_cov_3.26495, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17099 29 100.0 32 ............................. CGAATTAAACTTGGCAAGGGCGTTCATCTCAA 17038 29 100.0 32 ............................. AGTCAATGACTTCCAAAGATGCCCGGGCGGTT 16977 29 100.0 32 ............................. AAAGAGGTGATTAATATTTCGTTAATAATAGG 16916 29 100.0 32 ............................. CCTGGTCTGGGCTTCAGCTGCTGTCGGGTTAT 16855 29 100.0 32 ............................. GCTTACGAAGTTCTTTACCTGTACTTGGCGCA 16794 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 16733 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 16672 29 100.0 32 ............................. CTGGGTCTTGGTTTCGACGTTGTAGCGGATTG 16611 29 96.6 32 ......T...................... CGTTCATCGGCAGCGTCACGCAATATGAAGAA 16550 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 16489 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 16428 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCAGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //