Array 1 68869-68179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQE010000012.1 Anaerostipes hadrus strain MSK.14.4 NODE_12_length_77571_cov_196.771, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 68868 32 100.0 34 ................................ TTGCCGGGATGATGCTGGATATTTTTATGTAACC 68802 32 100.0 34 ................................ CAGATACCGGTGTTGTTCCTGTGATCGTTTTTCC 68736 32 100.0 34 ................................ ATCTGAGTTGTCACTTCTGCTGTATTTCCAGTAA 68670 32 100.0 34 ................................ GTTTGTATATGTGTGTAAATAATCATGTGTAAAT 68604 32 100.0 34 ................................ AATACCTGCTCGTCTCACGATTATAGAATCACTG 68538 32 100.0 33 ................................ TGAATATCATAATGCTTAAGATATTCCTTTAAT 68473 32 100.0 34 ................................ ATGTTACTATAATAGCACTTTGAATTGTATGTGA 68407 32 100.0 34 ................................ CGACAACGGATTGAAGATCATTATGATGATCTTT 68341 32 100.0 33 ................................ TACACAACAGTATTAAATAAATTTCCAAACTCT 68276 32 100.0 34 ................................ AATTTTAAGACATAATCCGACCAATTCCCTACTT 68210 32 71.9 0 ....A........CAA..A..CA....C..T. | ========== ====== ====== ====== ================================ ================================== ================== 11 32 97.4 34 GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Left flank : ATCCAGCATTTTTGTGGAAATGAGGTGATAAAATCAAATGTTAGTATTAATTACCTATGATGTAAATACAGAAACAGCAGCAGGGAAAAAGAGACTGAGAAAAGTGGCAAAGCAATGTGAAAATTATGGAAGGCGAGTACAAAATTCTGTATTTGAATGCATTGTTGATAATGCACAGTGTGTGATGCTAAAAGCACTCTTAAATGATATCATAGATGAAAATGTGGATAGCTTGCGTTTATATTATTTAGGGAATAAATATCAGACTAAAGTAGAACATTTTGGTGTAGATAGAGGAATACAAGTTGATCAACCATTGATTTTATAGTGATGCGAGGATATAGCAAACATAAAAAGAGTGGGAGATTCGCACTTAAAATATGAAGTAAAAAATAAATTTGTATCTAAAAATAAATAGTATTTGAATGATTTGTAGATATAAGATAAAATTTATTAGTGATATTGAACAAAAAATTAGAAAATTATTGGTTAATATTGCT # Right flank : ATATTTTACTTGGTGTGGGTTATATTAATATTTATAAATTGTCATCAATATTGTAGTAACGATAAGCGGATATACATACAATGGAAGCACAAGAAAGGAAGAAATCAATGAAACGATGTAAAATTACCGCAGTACGGAAAACAGAATATAAAGATCTAATGGAAAAGTATGAAAATCCAATCCAGCATGCCTGCGATATAGAAGAAGGACAAGTATTTATCACAGAAGGATGGAAACGACCAGAAGGATTTTGTGAAAGTGCATGGGAGAGTATTTCACCATTTGTTATGACATTAGCATATGGAGGCAGTGATATTTATGAAGGCTGGATGAAAAACAAAAACTCAGCGATGATCAGTTGCAATGACGGGTTTAGACCGGTAAGTTTTTACATTGAAGTGTTAGACGATAAAATATATTGATGAGGAAATATGACAGCGCTGGTTTATTCGGAACATCCATATTACGACAGGAAAGAGATCAGCATTGAAGATCTAAAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 139-1861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQE010000037.1 Anaerostipes hadrus strain MSK.14.4 NODE_37_length_37723_cov_150.43, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 139 30 100.0 33 .............................. TCCACCACCTTTCTGTAGATTGCCACGTTTCTG 202 30 100.0 35 .............................. CACAGACTCAAAAGTGTGTCCTGTTTGATTTTTGA 267 30 100.0 35 .............................. ATAATTACTTTCTTAACTGCATCTTTGAACTCTTT 332 30 100.0 34 .............................. GAAGAAGTTGTAATGAAAGTATACAACCATATCA 396 30 100.0 35 .............................. ACTATTCAATGCCCAGAACAGTACATGACATCTGA 461 30 100.0 34 .............................. AACGCTATTCCACTAACAATTGAAGATGGTTATT 525 30 100.0 36 .............................. TATGAATTATTGCGTAGTGCAATGACGAATGGTGTT 591 30 100.0 35 .............................. AGATAGGAGTATTGTTTTCAAACGCTGGTTTATCT 656 30 100.0 34 .............................. CTGATAAAGACATTATTCCTGACCTGACGAAGAT 720 30 100.0 34 .............................. ATATGTTCTACAAGTTCTTCGAAATATGGTACAT 784 30 100.0 36 .............................. ATAATTCCTGGAACTTCTGCCAACTGTTCTCCATCC 850 30 100.0 35 .............................. TTGTCTTTGAATTTTTGTGCTGATGTTGGAGTGTA 915 30 100.0 35 .............................. TGTAAATATCTTATCTTATTCCTTATTGGAGCATT 980 30 100.0 35 .............................. GAGGTAATCCAACTTCGTTATAGTAAGAATCCTCA 1045 30 100.0 35 .............................. AAATGAAAAGCTGTAATGAGATTAATACCATTTAT 1110 30 100.0 36 .............................. GTGTGATGATGCAGACGTATATGTAGTTGATGTTCC 1176 30 100.0 35 .............................. CAAAATCAAGGGACAAACAACACTAAATATGAGCT 1241 30 100.0 36 .............................. TTCTTTCATATAAATTTTTATAAAACTGTTTTGTAA 1307 30 100.0 36 .............................. GAGCCTGGGCAGATGATCATGGTTATTATGTGCCTG 1373 30 100.0 35 .............................. ACAGTAACGGTGGTTCTGTAGCGGAAGGTGTTACA 1438 30 100.0 36 .............................. AGACTGATTCTTCTAATCGGTCTGTATGGTGTAAAC 1504 30 100.0 36 .............................. AGACTGATTCTTCTAATCGGTCTGTATGGTGTAAAC 1570 30 100.0 36 .............................. GGTTACTTTTTACAGCCTAAAGTTTATTTTGAAAGA 1636 30 100.0 35 .............................. AAAATCGACCAAGCTAATGTCCTGCAAAAATCTCC 1701 30 100.0 35 .............................. ACGAGTGATATTGGTCGACAGATAATGGAATCATT 1766 30 100.0 36 .............................. AAATACACTCCATTTTCGCCACTTTTTTTCTGATAA 1832 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 27 30 100.0 35 GTTAAACAATAACATGAGATGTTTTGAAAT # Left flank : GAAAGCTGATAAATCCAAGCTTTCTTGTGCAATTTTAATAAAAATATACAGAGAGGGTGCACTTGGGAAAAACAATGGAAAGCACATAAAATCGTTGTTTTTTTAAAAAGACAATTAAAAAATGACGTAAAATCGTTGG # Right flank : TGAAATTAGATGATGCCTGTTGCACTGATACAGCATTAGTTAAACAATAACATAAATTTATAAGCACATTTGATTAATTTCTAATTTTAAGGAGGAGTCTATGAGAGTTAATGGAACATTAATCAATTATTATTTCCATTGTAAAAGACAGTGTTATTTACATGGAAATAGGTTGAATCTTGAAGATAATAGTGAAATCGTACAAATTGGAAAGGCAATTCATGAAGAACGATTACAAAGTTCGAACAGTGAAATAGCAATTGAAAATATTAAATTAGATAAATTAACAAAAGAGTATTTAACAGAGGTAAAAAAATCAGATGCTGATGTAGAAGCAGCAAAATGGCAATTATTATATTACCTAAGTGTTTTAAAAAATAAAGGAATTTATCGAAAAGGGAAACTAGAATTTGTTGAAAAAAACAAATCTAATAAAAAAGTAGTAATTTTGGAATTAACAGAGAAGAGGGAAAATGAATTAAAGAAAATTATTGAATCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAATAACATGAGATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //