Array 1 248850-251499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYT010000003.1 Klebsiella pneumoniae strain 2276 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248850 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 248911 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 248972 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 249033 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 249095 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 249156 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 249217 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 249278 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 249339 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 249400 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 249461 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 249522 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 249583 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 249644 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 249705 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 249766 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 249827 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 249888 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 249949 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 250010 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 250071 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 250132 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 250193 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 250254 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 250315 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 250376 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 250437 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 250498 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 250559 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 250620 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 250681 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 250742 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 250803 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 250864 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 250925 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 250986 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 251047 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 251108 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 251169 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 251230 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 251291 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 251352 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 251413 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 251471 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1333-330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYT010000052.1 Klebsiella pneumoniae strain 2276 52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1332 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 1271 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 1210 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 1149 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1088 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 1027 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 966 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 905 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 844 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 783 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 722 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 661 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 600 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 540 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 479 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 418 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 357 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //