Array 1 199213-197722 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPR01000002.1 Streptococcus cristatus strain A53 D8793_contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 199212 32 100.0 34 ................................ ATGGGAGAGACTAGGTTTATTGAAAATCCAGAAG 199146 32 100.0 36 ................................ TTTGCCAAGCGCTTTTCCTTGTCTCTGGACATTCCT 199078 32 100.0 34 ................................ AATCATCATTGCGAATAACGGAAGTACCGTGACG 199012 32 100.0 34 ................................ TAATTTATGGGACGGCATTAAATCAGCCTTTACT 198946 32 100.0 34 ................................ AAAATGAGAAACAATATCAGAAATCTCAAAAACA 198880 32 100.0 34 ................................ CGATATCACCCAAAGTATCAACAATGAGCGCTTT 198814 32 100.0 34 ................................ AGTAAACTGTGGGACGGCATGAAGAAGCTAGCTC 198748 32 100.0 36 ................................ ATGCCATCGCTCCACCCCACAGTAGAAACCCCTGTC 198680 32 100.0 34 ................................ ATACTTTTTGTGACATGGGTGTAGATTTGCATGG 198614 32 100.0 34 ................................ GCGTTATCAGCGATTGTCTTGAATGATGCAGCAA 198548 32 100.0 36 ................................ ACAATCTTCATTATGAAAAACTAAAGCATTCATCTT 198480 32 100.0 33 ................................ AAAAGCTGCCAGCCAAAAATAGCCTGCAGCAAA 198415 32 100.0 35 ................................ AAGCATACTGTCCGCTATGTTTGGGGGAATAAGAC 198348 32 100.0 34 ................................ TCAGTTGCTCTCGGTGTCGCCGTCTGCGCCTTTC 198282 32 100.0 35 ................................ TTAGGTTCATCATAGCCTAGGGCTCGCTGGCTATC 198215 32 100.0 34 ................................ ACCAGCACCAGCAGATACTGTACCGTGTGTTGTC 198149 32 100.0 34 ................................ ATACAGCGTTTGGAACTTCTAAAATAGAGGTGTC 198083 32 100.0 33 ................................ ATCAATCGCATTTTGAATAGATTCTGGTAAATC 198018 32 100.0 34 ................................ AGATAAATAATTGTGTGTGTGTCACCGCCAGCGA 197952 32 100.0 34 ................................ AATGAGTGATTGAAAAGTAAATACGATGTACCCG 197886 32 100.0 37 ................................ AAAAATTAGGATGCAGATACGTCTCTGGACCCTGAAG 197817 32 87.5 33 A......T......A..A.............. GGATAAACTGATAAAGTTTATTTGATTTTTTAA 197752 31 84.4 0 .......T........A..........-..GC | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 98.8 34 GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Left flank : CCAAGACAATTCGTGGAGAATTGGAATCCTATCCACCGTTTTTAATATAGGAGCCGGTTTATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGCAAGGCAGGAAAAGGTTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAAGCTAAGCTTTTGAGTATAATTGACACTGAGTCCGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTCTAGAAACGATTGGACGTGATACAAGTTATGATCCTGATATAGGGGTATTACTCCTTTAAATAGTCTAGTGCGAATGGATGTTACTCAGAAAAAAGCAGGACTTTCGCGCAAAAAATAAACAAAAATAAGGCAAAAATTCGAAATTCTAGAAGAGTTTACTTTCCTCGAAAGATAATTTTTGCCTAAAACAGTGCAACTACGCGCT # Right flank : ATTGGCTGACAGACTTGTTGTCTGTCGCTCCCTCCCAGAATGTGTTTTTTCATGAAGCCATTGTAGTTAACAAAGATCTAACTTCTACTTTTGGTTGGAAGGTTATTTGTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAATTTATGAACACGAACTATATCCAGATTATCTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGACACGAAGCTCCCCATAGTCAAATAAATCCGATTCTTGAAAGGAGAGTCGGATTTTAGTTTTGTTTGATTTCGATTTTTGTGCTATAAATTTTTTGCAATATCTGCTTGTATTTTCCTGAGATTCTGCTATAATGGTAAAATATTTATTTAGGAGGAAGAGAATGAGCTATATTTTGGAAATTTTACCTAGTCTTCTAAGTGGAGCAGCAACTACCTTGCAGGTGTTTGCTTTGGTCTTGGTTTTTTCGATTCCTTTGGGAATTATGCTGGCTTTTTCGATGCAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 143152-144046 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPR01000003.1 Streptococcus cristatus strain A53 D8793_contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 143152 36 100.0 30 .................................... AATCATAAAAAATAATCATATGTCTCATTC 143218 36 100.0 30 .................................... ATTTAGGCGTATAAGGGCCGAAGTAGTTCA 143284 36 100.0 30 .................................... TGTTTCTCAAAACAGAGTCAGCGACATTGA 143350 36 100.0 30 .................................... AGTGTTGTCATAAAATCAATAACATCAAGA 143416 36 100.0 30 .................................... GGAGGAGACTATGGCACAGCGGAGGATGTT 143482 36 100.0 30 .................................... CCTGTTCTTTACTCATAAAGTTTTGGTTCC 143548 36 100.0 30 .................................... TTTTCTCCCGTAAATCTTCATTCTCGGATT 143614 36 100.0 30 .................................... TAAATTTATTGATTTTATGATCGCTGAATA 143680 36 100.0 30 .................................... TACGTGAAGTAGATGTTTCTTAAATCATTC 143746 36 100.0 30 .................................... AAACTGTTCCTTTTACAGCCAATGATCCAG 143812 36 100.0 30 .................................... GATTTCTCAGGATTCTATATTGCTTTCAGA 143878 36 100.0 30 .................................... CCACATCAGAAATAATCCCTTTTTTCTTTT 143944 36 100.0 31 .................................... CATCTTGCCTTGCGTGTTGACTGTAGCTTTT 144011 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTATCTGACTTACCAATCTTTTGTAAAGTGTTGCAAACGCCTCCAAATGATGACAGAAAAATTTCCTAATATTTATGTGATATCTTTTCCTTCAAATGAAGGCTATCTTCATATCAACAGAGAAAATATGGAATTTGTTAATATTATTTCTGGTTTTATAGAGCATTACTATGAATTTCGGTTTATGTATGAAAGTTTTGTACAACGTTATCCATCCAACGAGATTCCCAATGAAGAAGAATTTTTAATTTCCTTGCAAAAAATTTCTCCTTATTTATTTAGCTCTGATGTGGAGCATATGAGTCTTTCGATTTATGATATGGTCACTTTAAAAATTATGAATAGCTTATACCAATATGATAAAATTATTGATTTTAAAGTACAGATGGCTAATCCATTATTAACAAATTTTTTAAAATATTAGACTTGACAAGCTTTTGGGGAGAATCTATAATCAGTATGAGAGTACAAAAAGCAAAAATTTTTAATTTGAG # Right flank : CAGAAGAAAACTAAGCGGGCTTGGTACTGGTCTCATAAAATTGATTTTTATCTTGACAAACTTATTACTGGGAACAAGCAATGTTGTAGATGGTTCTGGAAGAATTCGAAAGTTAAGATTAGAAGGAAAAGTAATTATGGAAAATTCAAACCAAATATCCCAATGTCAGACTCTTTGGGCTAAAAATAAGTATCTGGTGCTCAGTCATTCCAGTAAGATCTATCTGGAAATCCGTCAGTATCTGAAAAGCGATTTGGTGGAAGCAGCACATGTTCAAGACTTGATTGATCAGGCGGTAGCCCTGCCTGAAAATCGCGGTCAGGTCTGCAATGCCTTTCAGCATGTTTGGGGCTATTTTAAGAAAAAAGCCAGCCCAGCTGAAAAAGAAAACTTTATGCTATTTTTAGAGCGATACCAAGTAGGTCAGGTGAAGCAGGAGGTTTTGGTAGAAGCTGTGACAGATTTGCTTAGAAAGTACCCCAATCCCTATCTGCAACAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //