Array 1 6401-6830 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMJV01000003.1 Bacillus sp. Root920 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6401 32 96.9 34 ...........T.................... TCATCACTCCTCAGGATTTTTTCTTTGGGTTGTA 6467 32 96.9 35 ...........T.................... TATTGGCAAAATCAATAAAAGGCTGAACATCATCG 6534 32 93.8 34 ...........T.......T............ CTACTTGCCTTTGTGTACTTCGGAATCAAATATA 6600 32 100.0 33 ................................ AAATGAGGAAAGATCATAATGATTTTTAAGGAA 6665 32 96.9 35 ................A............... GCTTATTGCGTTGCCCCGATTCCAAATCAGTAAAG 6732 32 100.0 34 ................................ AGAAATCACAGTGAGTGTCTCGTATCTTTCCTGA 6798 32 90.6 0 ...................GA......A.... | T [6827] ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACAGTAAAGGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGATGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCGACCAGAAGAAGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGAGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCAGGCTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAATTCTATATAGAAACTTAAGGATTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGCGAAAACATAACTCTGCCTCCTGCGTCAGTAGTCATGAATCTAATTGAATTAAATTGTTGATGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGATAAAGTCGGTGCGAATGTGAGGTGAGCATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTGTGGTGATTTTCCACTCCAAGAGCTTTTGCCGTGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTTAACACGTGTTCACTCATACCGTTTCCTCCTGTCGCACTCTACATGAGTGCATGGATTGAAATGGTGAATGGTGGGAAAAGACAAGAAAGCTTGGTGTTGCACTCAA # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 7122-7350 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMJV01000003.1 Bacillus sp. Root920 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 7122 32 100.0 34 ................................ TGTGGTGATTTTCCACTCCAAGAGCTTTTGCCGT 7188 32 100.0 34 ................................ CTTTAACACGTGTTCACTCATACCGTTTCCTCCT 7254 32 96.9 33 ....................A........... GGTGAATGGTGGGAAAAGACAAGAAAGCTTGGT 7319 32 68.8 0 ..T......A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ ================================== ================== 4 32 91.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATAAATGAGGAAAGATCATAATGATTTTTAAGGAAGTCGCACTCTACATGAATGCGTGGATTGAAATGCTTATTGCGTTGCCCCGATTCCAAATCAGTAAAGGTCGCACTCTACATGAGTGCGTGGATTGAAATAGAAATCACAGTGAGTGTCTCGTATCTTTCCTGAGTCGCACTCTACATGAGTGGATGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCGTCAGTAGTCATGAATCTAATTGAATTAAATTGTTGATGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGATAAAGTCGGTGCGAATGTGAGGTGAGCATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTTCTGCGAATTACATAAATTCAAATATCTATCCAGTTCAAAATCTACACAAATGAATAATCAAAACAATGTAATTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCGACAAAAGGATAATGACCTTTGCTTCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGAATTTATCCACTTCCCACCGATAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGCTTAGCAATTTTCATAATTTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAG # Questionable array : NO Score: 8.43 # Score Detail : 1:0, 2:3, 3:3, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //