Array 1 187122-188081 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNZ01000110.1 Lactiplantibacillus pentosus strain IG4 NODE_146_length_546477_cov_165.223282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 187122 36 100.0 30 .................................... TTATAGTTTGTTATAATATACATATAGATA 187188 36 100.0 30 .................................... TGAAAGTAGTTCAGGCAGTGGTTCATTACG 187254 36 100.0 30 .................................... CCAGGTCAAGCGCCAGGCGGAAAAAAGTAG 187320 36 100.0 30 .................................... AGATTTCCGGAATGACGTTTTACCCAGAAG 187386 36 100.0 30 .................................... GCGAGCGGTACATGCAAGACTGTATTGATC 187452 36 100.0 30 .................................... TTAGTCTAGCTCAATTGCTTAATGCGTTTT 187518 36 100.0 30 .................................... AACAAAGAGAATACCGCTACGAGTGCGGTT 187584 36 100.0 30 .................................... ACGTTTCTTTCACTGTGTCATTCGTTCCTA 187650 36 100.0 30 .................................... TTTACTCACGTGTTTCTGGTGGTTGTATAG 187716 36 100.0 30 .................................... CTTTTGCGTCTTGTGTACGACTTGGTTTTT 187782 36 100.0 30 .................................... AAGACGTAGCTGTGACTGGCGGTGTATACC 187848 36 100.0 30 .................................... ACAAACCGAACCGATCACTTTTGGTTTTAA 187914 36 100.0 30 .................................... TTCCCATATTTCCGTTCAAACAACGTAACT 187980 36 97.2 30 ...........C........................ CGAGCCAAACAAAATTTCGATGTTCAGCAA 188046 36 86.1 0 ...........C............T..AG.....G. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.9 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCCGTCTTGGATCAAAGCCGGGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCACTAGATGTAGAGGAAGCACCAGGATTAGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTGGGACTCAAGCAATGCCCTGTGATGACCAATGTCAGCCACTATTTGAACCCGCAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGGCACCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGGATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : CACTTTTCTTAGTATGTATTTGTACGCGCCTAGTCAAAGAAAGTCCGTTGTTAGATCTATATTTTAATCCTAGGGATATTTGACCGGGGGTCGCTAAGGGCTTAGCTCATACGAGTAAAATCAGATTGTCACTAGGTGGACGATAAATTCTTGCTTCGAGAAAAAGGTTTGGCATCTTTCTCGATAATCGATGTCTTCTGCAATGACATCTATGCTTAGGCGCATACAGGGAGATGTTCACAATGACGGTAAAAGTACAAAAACAAGGTCATTCACTAATGATTCCGATACCGGCAAACTTCCATGTTAAAGATAACGCGGAATATCAACCGGTTATGGATGACGACACCGGAATCTTATCGTTTATCCCAGTGCATGAAAATATCTTTGAACAAAATCCTGACTATGACTTCCAAACTGCGCTCAAAGAAATGAGTTTACCCGATAATGGGGAACTGGTTGATAAAGAAAACGTTTGGGAATGAATCAGAAGTAGCATC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 13160-11988 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNZ01000021.1 Lactiplantibacillus pentosus strain IG4 NODE_23_length_44673_cov_98.133751, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 13159 28 100.0 33 ............................ CTAAAAGCTAAAGTCGCTTTTGAAATAATCATT 13098 28 100.0 35 ............................ TTACAATTATGTTCGGATTTCGGACGTTGACCCCG 13035 28 100.0 33 ............................ TGCAAATATCTATCTTGAGACTCGTCAGCAGAC 12974 28 100.0 33 ............................ CAGGCCATCGTGACTTATTTTTGTCATTTTTCT 12913 28 100.0 33 ............................ CACGAACAACCAGCCGCAGTATGACCCTGAGGA 12852 28 100.0 34 ............................ CTTTTTGGCAAAACAAAAACCCACCATATCAATG 12790 28 100.0 33 ............................ CATGTGGTTGGCTGTCTCAAAAGATAAGTATTT 12729 28 100.0 33 ............................ TGTTCGAAACGGCATGAGTTTGACTGGATTAGG 12668 28 100.0 33 ............................ TAAGGGCTTAACGGGTTTTGCAGATTCTCAATC 12607 28 100.0 33 ............................ CAAGGAGCGCATGGAGTGGATAAAGTTTTTTAC 12546 27 92.9 137 ..A..................-...... TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAACAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 12382 28 85.7 33 ..A.......T.C..A............ TCAGCTTCAGCGATTAGTGATTCAGAAGATTTG 12321 28 85.7 33 ..A.......T.C..A............ CAACAAGCCCTAATAACACAAGTACCCGGTTCG 12260 28 85.7 33 ..A.......T.C..A............ TTATAACCTCCATAATCCCATAAGTTAACCCTT 12199 28 85.7 33 ..A.......T.C..A............ TACGTTGAAACGTGCAATATCAGCATTGGAACA 12138 28 85.7 33 ..A.......T.C..A............ CTCGGTACCATCCGTTACATCAATGACGACAGG 12077 28 85.7 34 ..A.......T.C..A............ CCTCTAATTCATTGTTTACAATCAGCCACTCATA 12015 28 85.7 0 ..A.......T...............TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 18 28 94.0 39 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTTGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAAGCTTCACAATTATTAAGCGCTTACATTTTATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGAAATCATCGACTTTCATCCGTATATTTTCGTCAGAACCCTAAACTGTTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAGTGTTTGAATATACATCTATTTTCGGAAGGACTTTGATGGATTTTTGATAAATTATGACGACTAGTTTGTGTCAAGACAGTCTGATATGTCCAGTCTTGGAGTTTCCCTATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGACAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATATCCCGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTGAAAATTAGCAGAATTATCTGGGAAAACTCAGTTTTTGATACAGCAAAAATGCGCGTGTTTACAACATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATAGAGAAGAACATTCTGAATTTATTTTTGTAAATTCACGGCAAACTTTGAATAAAGTAAAGGTTGTACCGTATTTAGAGAAAGTACTGTTGCAGTTTCTATAGATTAGGGAGGGTTGTACGGTGATAACTATACTTGAATACGCATAGAAAGAATTTATAA # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.55, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTATTCCCCGTGCATACGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16405-15778 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNZ01000021.1 Lactiplantibacillus pentosus strain IG4 NODE_23_length_44673_cov_98.133751, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 16404 28 100.0 33 ............................ TTGTCTGCAATCGATTCAAACTTGAGTGTGACA 16343 28 100.0 33 ............................ CTACGCGACAACTTTAAAGGCGGTGGCGGTCAC 16282 28 100.0 31 ............................ GTGAAACCTTACCAAAGATAAAGTTATTGAA 16223 28 100.0 33 ............................ TGAGGTGGCTTGTTGTTTCATCTGAGCAAAATT 16162 28 100.0 33 ............................ TGAGGTGGCTTGTTGTTTCATCTGAGCAAAATT 16101 28 100.0 33 ............................ TGTTGAAGTTTTAGTTTTGTCAGTTCAGTCCTG 16040 28 100.0 34 ............................ TTAACACGCCGGTAGTCCCGTTTTTGGGGGATTG 15978 28 96.4 33 ......T..................... CATGACTGCGCACTATACTGAGTCAGCCCGACT 15917 28 78.6 33 ..T.....T......A.A..A.....T. GAGGTGCACTCTCGTGAGAAGCGTAGACGCTAG 15856 28 85.7 23 ......TT...........A...C.... TCGCTGAATCGAGATCCGCCATT Deletion [15806] 15805 28 75.0 0 T.A.........C..A.......AG..T | ========== ====== ====== ====== ============================ ================================== ================== 11 28 94.2 32 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAACTTTCGCTACAAAGCTAGTAGCAGGAACACTATTGATAAACGCTTATACGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGTTCCCCCAAAAAACATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGAGTAGCAAGCTATTGGATTGATTTTTTTAAATTCCGGATATAGTTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAACCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACACAATCAGCACTACTATTGCCTCTAATACATACAGGACTATCTCGGCATTTATACAGAGCGATGAACAGCATTATTTCATCAACAGGGCAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAACCTTCCTTATGAATCAAGCTTCCATTACATAAACAGTGCATATCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCCAGAGCGTGATGTGGTTTTGAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTTCGCTTCACAATTGGCATCAAATCAATGGGTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50600-51176 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNZ01000052.1 Lactiplantibacillus pentosus strain IG4 NODE_58_length_52348_cov_104.455032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50600 28 100.0 33 ............................ TTAAGTCTCAGTAAAACAACGCGTTATAGAACC 50661 28 100.0 33 ............................ CGACCGATGCACAAGGCTGGTACGTGTACAATG 50722 28 100.0 33 ............................ TATACTCATCTATCCCATTAAAATGTAAAGTCT 50783 28 100.0 33 ............................ CAATTTGCCAGTTTGCGATTTAGTTTTTGCATA 50844 28 100.0 33 ............................ TGTGTTAACACTCATTCTTCACCCTCCATTGAC 50905 28 96.4 33 ..........C................. TCACCTTCCTAAAACGGCATGTCGGCGTCACTG 50966 28 96.4 33 ..........C................. TCACTCATCCAATCACCACCAGTCGTAGGTTGC 51027 28 96.4 33 ..........C................. TTATACCACACATGCAGGCGTTTCAAGTGTCTA 51088 28 96.4 33 ..........C................. CGGTCATAGATTAGTGACCACATATACAGGGCA 51149 28 89.3 0 ..........C......A...A...... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : CGCCTGCTACAACAAGTCGGCGCACAGATTGTGGCTCAGACGGCAATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCTAAATTGCCACTGTTTGATGGAAATAACTCAGAATAATATCACTAGTAGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGATGATTTTATAGCTATTTTTGGCCTTATCAGTATTGTATGACCATTTAGACCGGTTAATTATTAATTCGTTTATACGGCAATTTTGAGCCGAATTTGAGCGATTCGTTAAATCTTGAGAAGCAATCATTTTTCAATGGCGATGCAAATTCAAATAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAATAAAGCCTAAAGTAAGAAAAAGTAACATGCAAATCACTCTAAATTTCTTACGCATTGAAATATTTAGTAAGCGGTTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAACGCATCAAAAAAATCACATCGCAATGGAAAATGCAGATGTGATCTTTCTGATTGTTCGATAGTTTTTTGCTGTTGAATCCGCTTATCAATACGATGCTCTGTTGAGGCGTAAAAGTAGTACATCTTCAATCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGTATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTAAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGTAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATGCTCGCTCCAATATGCTTGGCTTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //