Array 1 15491-14180 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTI01000007.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4349 NODE_7_length_116353_cov_1.12639, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15490 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 15429 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 15368 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 15307 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 15246 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 15185 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 15124 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 15063 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 15002 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 14941 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 14880 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 14819 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 14758 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 14697 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 14636 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 14575 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 14514 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 14453 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 14392 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 14331 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 14270 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 14209 29 100.0 0 ............................. | A [14182] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33346-32160 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTI01000007.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4349 NODE_7_length_116353_cov_1.12639, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33345 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 33284 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 33223 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 33162 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 33101 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 33040 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 32979 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 32918 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 32857 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 32796 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 32735 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 32674 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 32613 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 32552 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 32491 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 32430 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 32369 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 32308 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 32247 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 32187 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //