Array 1 888514-888118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000001.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 888513 28 100.0 33 ............................ CTCGGCGGCAGAGCGCAGACAGGCCAGCTCACG 888452 28 100.0 33 ............................ GACGTTGGTTCCGGCGTTGCGCGGAGCCTTGAC 888391 28 96.4 33 ...T........................ GTGTGTCCACATGTGGAGGAATGCCCAGCGTGA 888330 28 100.0 33 ............................ CAAGAACGCGGTCGCAGGAAACCACCACCGCGG 888269 28 96.4 37 ..........G................. GCTTCGCACCGATCTGGCTTCCGGCGACGCTGGGCGA 888204 28 75.0 32 ..A......A...C......C.C..A.A GCGGGACGTGACACAGCAGGACGCGGCTCGGC 888144 27 71.4 0 ..A..........CG..A.C.C-.C... | ========== ====== ====== ====== ============================ ===================================== ================== 7 28 91.3 34 GTGCGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GCGCTGGGGATGGCCTTCGGCCCGGACGTCGGCCTCGAACTCGTCGACACACTGCTGACGGAGAAGGCGTTGGCCGGGTACCACCTGCTGCCGAGCGTGCGCGGCGATCTGCTGCGTCGCCTAGGTCGGCTCGCCGAGGCCCGCGCCGAGTTCCAGCGGGCCGCCGCCCTCACCGAGAACGCCCGCGAACGCGCGCTGCTGACCAGACGCGCCGCCGAGTGCGAGCCCGTCCCGGCCACGGAGTCCGGCCCGGCTGCGGGGTCCGACCGGGCGGCGGGGTCCGACCGGGCGGCCGAGTCCGGCGCCGAGCAGCGGGGAGAGACCGCAGCCGTCCAGGCATGACCGGGCCGGGCCTGCGACACACGAGGATGCGCGGCGGTCGCCCACTCGCCGCCGAGAGGCGACCGGCACTGGGATACGGTGGCCCGGTGGATTCCTCGCTGGCCGGACGGAAGTATCACGAATCGATGACGCGCTTCTGAAAGGCCAGGTCGCGAAGG # Right flank : CGATGCGCCCAGATCGAAGCCGCCGCGACGACGCACCCCGGCCGGCTCAGTGCGTGGCGCCGCCGGGGAGGCGTTCGTCGACGTGGACGGCGAGGCTCGTGTGGACGATCGTCTGTAGCGCCGCCGCGATGGTGGCGACGGACATGCTGGGGCGGGTGCCGTCGGGGACCTGTTCGGGGGCGAACGGGACGTGGACGAAGCCGCCGCGCGGGCCGCTCCCGTCGCCGCGTCGGCCTCGGCCGCCCGCGAGTTCGTGCATGAGCCGGTAGAACACGTGATTGCAGGTGAAGGTGCCCGCCGTCTGCGACACCGAGGCGGGCACGCCCGTCCGGTGCAGTTCGGCCACGCAGGACTTGATCGGCAGCGTGCTGAAGTAGGCGGCGGGCCCGTCCGCGACGACGGGCACGTCCACCGGCTGGTCGCCCGCGTTGTCAGGGATCCGGGCGTCGTCGATGTTGATCGCGACCCGTTCCAGGGTGATCCCCGCCCGGCCGCCCGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 896552-897190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000001.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 896552 29 100.0 32 ............................. CATGATCCGGCCGTCCTCGGTGATGCTGGCAC 896613 29 100.0 32 ............................. TGGTGAGTCCGGAGTTCTCTGTCAGCGGCCCC 896674 29 96.6 32 ............T................ GTGGACCTCCCCGCCCTCGATCTGAGAGACCC 896735 29 96.6 32 ............................A TGGGGACTGCTGGTCTCCGGGGTGGCCGGGCT 896796 29 100.0 32 ............................. TTGGGCAACGTCGGCCCCTCATCAGGGTCGGC 896857 29 100.0 32 ............................. GCGCGGCCTCGACCAGCGGAACCCGGATCTCT 896918 29 96.6 33 ............................A GGGCCGTCTCGATGTCCTGCTCGTGCTCTGTGA 896980 29 96.6 31 ............................C GCGGAGCAGTCCAGGTCGATCAGATGCTCCA 897040 29 86.2 32 ...C........T.........C.....C ACCAGATCCGGGCCTACCCCGTTCCCATCGAC 897101 29 96.6 32 ...C......................... GACCATCCTGCCGTCACCATCCCAGGCAGGAC 897162 29 93.1 0 ...C........................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.6 32 GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : CGCGCGACACAGTCGAGCGGCGGACTGGGCCTGCGGGCCGCACTGGCGAGAGGCGCCGTGGACCACGAGGCCGCCTCGTCGGACGGCGGCGGGGCGAGCCGGTCCCACCGCACCGACCACAGTCGACCGGGAGCCCGCCGAGAGGGCGACTCCGCCGCCTCGGCCGCCGGCCTGCCCGCGCCGGTCGGACACCCCGTCTTCGGCCGCCCGCGCGCGTCACAACCCGGCACCCCGAAGCCCGTTCCGCCGAGGCCGAAGCCGGTCTGAGGCGGGCGGTCGGGCCGCACGGCCAGGCCTGCACACGGTCGACCGCTCGCGCGCCGCCGAGCCTGCGGCGCAGGGCTGCCGCCTCTTGGTCGCAGGCCGGCTCCGGCGAAACCGCACACGCGGGCACGTCTCGGTGCCCCACGCTCCAGTACGGTGACCATATGCGTACGTCGAACGCCGCACTGTCACATCACGAAACGATCACGCGCCATTAAAAGCCCAGTTCACGAAGG # Right flank : AATGTGGGCCTGCACCTTGTACTTGGACCCCCCGGTGAGCGGGGGTCAGGTGCTCGGCGACCGGGTTCGATCTCGGTGTCAGGTCGCCGCCGGCCCGCAGGCGGAGCCTTTCGGCCGCCGATGGTCGTCCGGATCGTGCCAGGTCCGCCCGTGCCCTTCGGGGCAGGCATCCTGCCGATGATGCGACACCGTGTTTCGCGGCAGGGCAGCAGGACAGGCGATCGCACCCGCCCGCCGAAGGTCGGCCGAAGACGGCCGTCGGGCGGCGAATCCTATAGGATTCCGCGCCGCCCCGGCCTAGGGTGCGACTCGGGAGGCCGCCGCGAAGGGCGGCTGTCGGCGGGTCGCGGGAGGCGTGGATGGCTGTCGAGACGGCGGAAGCCGGGCGCGAGCCCGCCACGGCGGCCGTGCCGACGACGGCCGGGTCTGGCACGACGGCGACGGCGACGGCCGCGAAGGCGGCGGCAGCGATCGACGAGGCAGCCCCGCCGGCCGGTACC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : GTCCTCCCCGCGCGAGCGGGGGTGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 913173-912778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000001.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 913172 29 100.0 32 ............................. GAGTTCTCGATCCGCGCGATCGGTGGGGAGGC 913111 29 100.0 32 ............................. CGCAGCGACAACAAGTCGCGCATCGACGACGC 913050 29 100.0 32 ............................. GAACGCGGCGTCGTGCATCCTCCCGTCGCGGG 912989 29 100.0 32 ............................. CGATGCGGGACCGGCACGCCGACGTGCTGCTG 912928 29 96.6 32 .........................A... TTCCGGCGCGGCGTGCCGTTGAGGTGCACCGA 912867 29 79.3 31 ...........G...AC......C..CT. ACCGGCAAGAGGTAGTACCGGTTCCGCCGTC A [912847] 912806 29 79.3 0 ....A........AG.....C..CA.... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 GTGCTCTCCACACGCGTGGAGGTTGGTCG # Left flank : ACACCGGATGATCGTCGAGGCCGTGCGGGCGGGCGACCCGGCCGCCGCCCGCGACGCCCTCGGCGCGCACTTCGTGGACATCGAGGAGCGGGTGGCCCGGCTGATCCGGCAGAGCACCGAAGCCGACTGAGACCGAGGTCGGCCGGGGGCCGTCGGTCGGTTCGGGTGGTCGGTCCGGCCGATCGGGTCGGCCGGTCGGCCTGGCAGCCAGTCGGGCGGCCGGCCGGCGCGTGGGCCTCGGTATGCGGATCGCGCGTCGTGGGGGCGGTCGGGCTGCCTGGTTCGTCCTGCCCGGCGGGCGGGGGCTCGGCGGGGTCGGTGATTCGGCGGGTCGATGGTTCGGCGGGCTCGGCGGGCTTGAGCCTTGGTTCGCGCAGCGGCGCGGCCGGAGGCCGACACGCCCGGATCTCGTCCCGACCGTCTGGAAGGATACGGACATGCATCTCGCCCACAGCCTCGAAAACGGTAAACCCGGTTTCTGAAACCGCAGGTCGCAAAGG # Right flank : GAAACCGGGCTGCTCGTCAGCTCCTCGCCCCGGTGCTCCGGCCGCGAATCGCCCGTCAGCTCGCGGGCTCGTCCTGCGGCTCGGGTTCGGGACGGGCGGCGGGTCGCGGGCGGACCTCGGTCAGCAGCGTGACCAGGATCAGCAGGACGACGCCGCAGGTGAGCAGCGCGTCGGCGATGTTGAACGTGGGGAACCAGCCGGTGTACAGGTAGTCGGTGACGGCGCCGTCGGCGATGCGGTCGACGAGGTTCCCGGTGGCCCCGGCGAGGATCATGGCCAGCGCCAGCCGCGCCGAGTTCGGCACCTCGGGGGCCGTCCGCCAGGCGTAGACGGCGATGCCCAGCGTGACGGCACCGGTGACGGCGATGACCACCCAGGCGGGCAGCGAGGCGCCCATGCTGAAGGAGATCCCGGGGTTGTAGGCCAGTCGGATGCTCAGGAGTCCGAAGTCGGCGTCGACCGGGTGGGCCTGCTCGACGAGGTGCTTCACGACGAGGTCG # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACACGCGTGGAGGTTGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 927629-926929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000001.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 927628 28 100.0 33 ............................ GTACATCGACCGGCACGGCCGTATCGACGCCGC 927567 28 100.0 33 ............................ CGATCGCGGCACGCCCTCAGGCCCCGGCTCCCA 927506 28 100.0 33 ............................ GGCACGGTGATGAGCCTCGCTCGCCGCCTCGTA 927445 28 100.0 33 ............................ GCTCGACCTGCTCAGCACCCTTGCCCCCACCAA 927384 28 100.0 35 ............................ GCAAGACCAGATCCGCCTTCGTGACGAGGGTCTTC 927321 28 100.0 33 ............................ GATTAAGACGCAAGGTCGAGCCCCCGGTTGGGC 927260 28 100.0 33 ............................ GCACCCGCAGCGTGCCCGCGTCGTCGGGCGCGA 927199 28 100.0 33 ............................ AAATGAGCGATGGAGCCGAGCTGCACCGCCGTG 927138 28 100.0 33 ............................ GACGCCGACGACCACCGCCGGCACCTGCCCGGC 927077 28 100.0 33 ............................ GATGCAGCCGGTGGACGTCGGCGAATGGGAGGA 927016 28 100.0 33 ............................ CGTTAATCTTGCCGATTTGGCACCGGCCGTTGC 926955 27 96.4 0 .....................-...... | ========== ====== ====== ====== ============================ =================================== ================== 12 28 99.7 33 GTAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : CGGCCTTCGTCGTCCCGACGGCCTCGTCATGCCTACGGGCCTTGTCACGCGGGGCTTGGTCGTGCGGGCAGGCTTTCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGACAGCCGTCGTCGTCCCGACGTGGCGGCGTCCAGCGTCCACGCGGCGGGCACCCGCCGGAGGCCGGTTCGGCGCGTGGTCCTCGGCGACGGTTCCCAGGGCGGCGGCCGGGCGGGCGACGTCGGAGCGGCGACGCCCGGCGGGCGGTTCCCACCGACCGCCGCGCTCGGCCTGCCGCGCGACACCGCCGAGGCCGACCCGCCCCGGCAGCCTGCGGGCCGATGCCGCCGGGACGCTGCGCTACCGTGATCGACGTGGAACCGATCCAAGCCGCCCGAGCGCATCACGAATCGATAACGCGCCTCTGAAGGCCCAGGTCGCGAAGG # Right flank : GGTCGTCAGCGCTCCCTGGTGACCCGCCTCGCCCGCACGACTCCGCACGGAGGCCTTCCGCCCGGACCGCACGTCACCGACCTCCGCAGGCGCCTGCCCTGCCCCCACACGTGCCCACACCCGTCCGCCTCAGCTCGGCCCCCGTCCTCCCGCCACACCCCCGCAGGCGTCGGGCGGGGGGATCTCGCCCACAGCGGTCGCCTGACCGGCCTCGGAGCATCGGAGCGGAGCGGGCAGAATGGACGCCGGACAGGCGGTGTCCCCCGATCGGGGCGCGGCGAGGCACGAGGCACGGCCGAACGGAGGCACGGTGGAGGGCGCTGAGTTGCGCGGGATCGTCGCGATGGACGGGCCGTCGGGAACGGGCAAGTCCACGGTCTCGCGTCGGCTGGCCCGCGGCCTGCGGGCGCGCTACCTGGACACCGGGGCGATGTATCGGGCCGTGACGCTGGCCGTGCTGCGCTCGGACGTCGACCCCACGGACGCCCCCTCGGTCGCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 948158-947950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000001.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 948157 28 100.0 32 ............................ TGCATGTCTGGTCACTCACCGTTGGAACTGGC 948097 28 100.0 31 ............................ CTGGACTGCACCGTCAGTCACCTGTCCACCT 948038 28 96.4 32 ...................A........ TGCTGTGTCACGCCGAGCGCGGTGGCGAGGGC 947978 28 96.4 0 ...........................C | G [947964] ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTCCGCCCCGCGCAGCGGGGGTGAGCCG # Left flank : GCTCGATCTGGGCGTCGGAGACAGCCGGTGAGGCCAGCCGGTTCACCAGCAGCTCGACCTCGGCAGGATCGGCCACGACCGTGGTCTCCCAACGGTCGGGATCGATTGCGCTGGCGAGAACGGTTCGCAGACTCATCGTGGTGACCTCCTGCTCGGATACTGCCGGCGGGTCCTCACCAGGCCGAGGACGGTCCGAGCTGCGCAGGGCGCCGGCCCTGCTGGTGCGGCCGGTCACGGCATCCGCGACCAGGTCGATGGGCGGGGCGGGGAGCGCGGCCAGCCGATTCAGTCGAGGCGGGCCTCGCCTCACGTGGAGAGCGCCGCGCACCCGAGCGAGAAACGACGTCCTCCAGGCTGCCGGTCGGGTGTGCGAGTCGTCCATCGTGATGACGGCCGAGTGCTGCGCGACGCTGCGGTACGGTGACCGTGTGTATCCGGACAATCCCTCAGCGTTCGATCTCAAACGTATAACGAGCTTCTGAAACCCCAGTTCGCGAAGG # Right flank : GGCGGCTCGGCCGGTGTGCCCCGATACAGTGCGTCCCGTGACTTTCACCCTGCTTCCCGCCGTCGACGTCGCAGCCGGTCAGGCAGTTCGCCTGGTCCAGGGCGAGGCGGGCACCGAGACCATGTACGGCTCGCCGCTGGAGGCGGCCCTCGCCTGGCAGCGCGACGGTGCCGAGTGGGTCCATCTGGTGGACCTCGACGCGGCGTTCGGCCGGGGCACGAATCGTGAGCTGCTCGCGGAGGTCGTCGGCGCGCTGGACGTGCAGGTCGAGCTCTCGGGCGGCATCCGCGACGACGAGTCGTTGCAGGCGGCCCTGGCCACCGGTTGCCGCCGCGTGAACCTGGGCACCGCCGCGTTGGAGGACCCGGCCTGGTGCGCGAAGGTCATCGCCGAACACGGTGACGCGGTCGCCGTCGGCCTGGACGTCCGCATCACCGAGCAGGGACACCGCCTCGCCGCGCGGGGCTGGACCAGCGACGGCGGCGACCTCTGGGAGGTCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCTGCGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.00,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 426707-427527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000004.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 426707 28 100.0 33 ............................ GGGCGGCACGGCGTGTTCGCGGGGGTGGTGGCG 426768 28 100.0 33 ............................ GGGCGGCACGGCGTGTTCGCGGGGGTGGTGGCG 426829 28 100.0 33 ............................ GACGATGGCGGGCTGTTTCCCGAGCCCTGCCGG 426890 28 100.0 33 ............................ CTCTTCGCGGGCGCCGCTGGCCGTGTCGACCAT 426951 28 100.0 33 ............................ GTACTTGCGGATCGGACCGGCCCCGGCACCCGG 427012 28 100.0 33 ............................ GAAGGTCGTTCGGTATGACACTGCTGACCGAAG 427073 28 100.0 33 ............................ GAGCTCCGGGCAGACAAGCGGGGCCGCACCAAG 427134 28 100.0 33 ............................ GGCCTCCCCGCCGACGACCCCGCGATGGACACC 427195 28 100.0 33 ............................ TGGGCAGCCACCCGGCCGGGGGTTTTTCCTGTT 427256 28 100.0 33 ............................ GATCGGGCCGCCGTCGTCGATGTCGCGGTGCTC 427317 28 100.0 33 ............................ GCGGAGAGCTCTCTGGCCGAGATGACGCGCCGG 427378 28 100.0 33 ............................ GGGTGGCCCACCAACCTCGCGGCGGCGCGGACG 427439 28 100.0 33 ............................ CGTGTACCGGGACACGTTGTGGGGTCGCACGAG 427500 28 89.3 0 ...........G.A.............T | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 33 ATCGGCCCCGCACGCGCGGGGATGGCTC # Left flank : GCCGAGGTCGTCGACTGCGCGGACTGCCAGGCGATCGTCTGGGACGAGCCGAGCCCGCGCCCCGCCCATGCCCGGCCACGCCTCTACATTCGGCGCGTCGGCACCGTGCCGGTCCACATCGTCGACGTCGAAGGCCTCACCGCCACCACGATGACCAGCCTGTGCCGCACCGTCTTCCACCTCGGCGATCAGCTGGAACAACTCGCGCCCGGTGCCGGAGCCCCCTGCACCCGCTGCCTGCTCGCCTCGTTATCGAGACACGTGCTCACCGCCGCCTGATCTCGCCGCGTCTCTTTCCGCCGCACGGTCCCGACTCGGGGCAGGCCTCGACATCCGTCATGGTCGGCGTCGTCGTACACGGCTGGGAACGAATTCACGGCGGCGCAGGCCGGAAGCCGATCGGACGCGGAGGCCCGCGAACACGCGGTGAGAGCGAAGACTACGCTGAGCAACTGGTATTTTCGAGGCACTGCGGCCGGAGAACGCCCAGGTCAAGAAGT # Right flank : TACCGAGGAACGGCCGGAGCTGTTCCGACACGACAGCTACCGCCGTGGCGTGGCGTGCCGCGTAGGTAGGTGCTGGCCTCTCATCGGACTCGTCACGCCCGTCTTCGCCGAGCACGTCGTCGCAGGCACACGACCCGTCGCGCGGACGTCGGCGGAGTACCGCCTCGGATGGGGAGAGGACGCGGCACGATGACGGTCGCGCCATGACCGGCGGTCTGCCCGAAGACGTCTGCCCTGACGGCAGGCCCGGGCAGGCCGTGTCACTCCGGGAATCGGAGGACGCTCGCATCGCCGGGACGACGCTCCTGCGGAAGGACCGACGGAGGCAGACGTCCGAAGAACCACCCGACCCGGCCGACCTGACCCGGCCGACCCGACCCGACCCGGCCGACCCGAATCGACCGGGTCGAGTCGCCGACGGTCGGCGACTCGACCCACGAGCCGGCCGCCCGAACCCGCCGACCCCGCCGACCCCGCCGATCCTGACGTCACTCCCGCCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCACGCGCGGGGATGGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 39611-39034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000003.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39610 29 100.0 32 ............................. CGGTCCTTAGGTACGGTCATAGAGTTCATCTC 39549 29 100.0 32 ............................. CACCGCCCGCCTGGGCGAGGCGGGTGCGGCCC 39488 29 93.1 32 ..........................C.A AGCACCGGATGTCGAGCTTCTGGAAGGCCTTC 39427 29 100.0 32 ............................. CCGAGATCGAACGGTTCGCCGGCCGGCCGCTG 39366 29 100.0 32 ............................. GGCGCCTACGTCCTCGGGAAGCTGCGCATCGC 39305 29 100.0 31 ............................. GAGGTCGGCGACGTGATCCGGGACCTGTACT 39245 29 100.0 32 ............................. AAGAACCGCGACCACGACCACGACCGCGAGGA 39184 29 100.0 32 ............................. CAGGATGCGTGCGGCCTCTAGGTCGGCATCGG 39123 29 93.1 32 .....................A.....G. CGCATGGTGTCGAGCAGGGCGCACGGAATCTG 39062 29 86.2 0 .................AA..A.C..... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.2 32 GTGCTCTCCACGCACGTGGAGGTTGGTCG # Left flank : ACCGGCTCATGCCCCAAATCGTCCTGGACATTCAGCGACTGCTGACGCCGGCGGGCGGCACGGAGCCTGCGGAGCTCGACGAGCCGGAGGAGGTCGAGCTCGTGCACCTCTGGGACCCCGACCTCGGCGCCGTCGAGGCGGGCCGTAATCACGCCCACGACGTGGACTGGTGAAGCGTGGCGAACCTGATCGTCATCTCCACGACGGCCGTCCCTGACTACGTCCGAGGCTCACTCAGCCGGTTCCTCACCGAGCCCGCACCCGGCCTCTACGTCGGCAGCGTCTCCGCTCGGGTGCGCGACCTGCTGTGGGAAGCCGTGAGCGAGGCCGTCGGCGACGGTGCCGCCGTGTGCGTGCACCCCGCCGACAACGAACAGCGGTACATCGTCAAGACGGCCGGTCGGCGGCGCCGCCGCGTCATGGACTTCGACGGGTTCCAACTCATCGAGTTCCGAGACACGAACGGTCAATCGGCTCTCTGAAAGCCCAGGTCGCGAAGG # Right flank : GGCCGCTCGGACCGCGTGCTCTTTCGCACAGGTGGCACGTGATCGTCCCGCCGAGCCCGCGACAGAGTCGATCGCGGGAGCGCGCCGGGTGTCCCAGGAGGCCGTGCGCCCTCGGAGGTCGCCGCCGTCGTCGGGCGACACAGTGCCCGGCCCCGGCGGAGGGAGTCGTGCCGAGGTCGGGCGCTGTCGGGGGCGGAGCCGGGCCCGGGTGCGCGGGCCCGACTCCGGTTCTCCGGCCTGCGCCGAGGCTCGGCGGGAGCCGGGGGGTCTCGGGGTGGCGGGGAGCTTCGAGCGCCGGGGAGCATGCGCCGTGACGCCGTGACGCCGTGACGCCGTGACGCCGTGACGCCGTGACGCCGTGACGCCGTGACGACCGGGGCGACTGAGGTCGCTCGACGCGGTGGCAGTCGGCACCGCCCGCCGCGACCGCGATCAGGCCGTCAGACGGCGATCCGGCTCGAACTCCGTCCCACCGGCGCCGGGGCTCATTCGACGCCGTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTTGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 50751-51511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000003.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50751 29 100.0 33 ............................. TAGTTCTCGCCGAGCCGCTGGATGTCCTGGCCC 50813 29 100.0 32 ............................. GCATACACGCGCACCGCACGAGCCCACGAGGA 50874 29 100.0 32 ............................. GGCACGCCGCACACGGCGGCGGCGACGGCGTG 50935 29 100.0 32 ............................. CCTGGGACGCCTCGACGAAGACGGACGAGGGC 50996 29 100.0 32 ............................. GGCGAGGTCGACCTGCCCGCCGACGGCGGCGG 51057 29 100.0 32 ............................. GAGGTCATCGGCGACGCGATCCGCAACGCTGC 51118 29 100.0 32 ............................. GCCCGGCCGGGGCGGCGTTCTTGGCGGAAGAC 51179 29 100.0 32 ............................. ACCAGGCCCGCGACCAGCTCCAGCCCCGCCGC 51240 29 100.0 32 ............................. CGCCGATTCGACATAGTCGGCATAACCTCGAA 51301 29 100.0 32 ............................. GCATTCAGGCGCCCTTCGATCTGGCGAATCGG 51362 29 96.6 32 ..........................C.. TCGGCGATGTCGGTCTCGTAGGTCAGATCCTC 51423 29 96.6 32 .......................G..... CCCGTCTCCCCGTCGGCGGCCTCTACGGCCGC 51484 28 75.9 0 ...C.........A.C......-CC...A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.6 32 GTGTTCTCCACACGCGTGGAGGTTGGTCG # Left flank : CGTGACCGGGCGTCGGGTACCCGGCGGGCAGTTCGAGCTGGCACTGGAAATGCGGGGTCAGTTTCCCGATGTCGTGCAGCGCGGCCCAGAACTGCACCGTCCGCCCAGCCGCCGCCACGGACAGCCCCAGCTCGGCCGCGATGTCTTCGCGCAACCCCGGCGCCACCATGTCGTCCCACAGCGCCGCCGCCACGGCAGCCGTGTCCACGAGATGGAAGATCGCGGGATACCGCCTGCCGAGGTCGCGTTCCTTCCCCCACAACCGCAGATCCACCAGTACCCGGTGCTCGATCTCCGCCGCGTCCCCGCCGGCATCGCCCGTCACCACATCGTCACCCTCGGTACTCACGCCGACACCCTAGAGCGGCACACCGACGAATCCCCCAGGGATCGACGGCCGTGGCCACAGGGCACGGGGATCTGAGAGGATTCCCGTCATGCGGACTCACGGCAACGACTAAAACGGTAAATCCGCTTTCTAAAGCCGCAGGTCACGAAGG # Right flank : AGCCGGATCGGATCGACGCGCTCGATGCCCGAAAGGGCCCCGGCGGCGAGCATGTCGAGCACATCGATTCGTCAGGGAGCCGTCACGGGCTCGGCAGGGTGCGGAGGAACCGGAGTAGCTCGCGGTTGAAGTGCTCGGCGTTGTCCTGGTTGGCGTTGTGGCCGGCGTCGGGGATGACGACGTACTCGGCGCGGTCGTCGGCCGCCGCCCAGCCGGGCATGTCGCGGGCGATCGTGCCTCGGTCGTCTTGATCTCCGTGGGTCAACAGGCAGGGCACGTCGATCCGGAAGTCGGGATGTCCGGTGCGGCTCACCGCCGTGGCGACGGCGCCGAGGATGCGGATGAGGTCTCGTTGGCTGATGCCGTTCAGCGATTCCCGAGCGAATGCCTCGACGTCGGCGCGGATCGTCGTGGCCGAGGCCATCGCCTTGCGCATGCTGCGCAGCGGCCATAAGCGCAGGATGGTGGGCACCGATCCGACCGCCGCCATCTCGGCCCGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACACGCGTGGAGGTTGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 65733-65549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000003.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 65732 34 100.0 41 .................................. AACACCAACGCTTCTGGAAGAGAAGGAAGCGGAACGAGTGG 65657 34 100.0 41 .................................. AACGACCACGCCGCCTTGCTGCGCCAAGCCCTGGCAAGCCC 65582 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================= ================== 3 34 100.0 42 GTGGCATCGGCCCTTCGGGGTCGATGAGGATCGC # Left flank : GTGGCCGTCGGTCAGCGACTACTCGATGCCCTGTGGCCCCGGCGTGGACGCTGACCCGGCTTCGTCGGCCTTCGACCGACTCCGAATCCATCTCGGACGGGATGCCAAGGCTCGGCGGCCGGGCCGTGATGCCGGACGCGGACGGGAAGCGAGGACTTCGGACGATCACGTCGAGCCATGTCGAGGACCACGGCTGTTCGGAAACCGCCGTCCGGGTTCGCGGGGCCTGCGGCTGCACAGCCCACCGGTCAGGTCTCCCGCTGAGAGACCTGACAACGGCAGCGGTGACGGACTCGATCTCGGTCCACGCGGCCCGTGCCCGGCGGACGGCCTCGGGCTCGTTCCGTTGAGCATCGCGACACGCGATGTCGTGATCTCGTGCTGAGGGAAGGCAGGCGTCGGACGACACGCCTGGACATTCCGAAGTGTTCTGCGGGCGTGTCGGTCACCAGCCGATAACATCGGAGCATTCAGAACGGCAAGACCCCTGCTACGACAGG # Right flank : GATCTGTCGACGCCGTCACGGCACCGCCGGGTCAATCCGTCAACGACGGTGCCCGACGCCGCCACCGCATGGCGAACGTCGTCATCCTCGCTCGCCGCGTTCAGCCCGCCGTCGCCAAGCCCGTCTGGAAGGCGATCACGACGAGCTGCGCTCGGTCGCGGGCGTCCAGTTTCATCATCGCGCGGTTGACGTGGGTCTTGGCCGTGAGCGGCGAGACGTGGAGCCGCTGGGCGATCTCGTCGTTGGACAGTCCGGTGGCGACGAGTCCGACGACCTCGCGTTCCCGGTTGGTCAACGCCGACAGCCGTTCGGGTCGCGTCGGCTCGGCCCACTGCGGCCCGCTGAGGAATCGTTCGATCAGGCCTCGGGTGGCCTTGGGGGAGAGCAGCGCCTCGCCCCGCGCCACCGTCCGGATGGCCTCCAGCAGTTCGGCCGGCCGCACGCCCTTGCCGAGGAACCCGCTGGCCCCCGCCCGCAACGCCTCGAACACGTACTCGTCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTTCGGGGTCGATGAGGATCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 4 67258-66821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000003.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================== ================== 67257 37 100.0 35 ..................................... GGGCGTGCTCGGCCATCGCCCGCCGGTGCTCGGCC 67185 37 100.0 38 ..................................... CAACGCAGCCTGCAACGCCGTGGCGAAGCCGTGCCGGT 67110 37 100.0 38 ..................................... CGCGCAGCTTGCGAGTACATCCTCTGGGGCACGAACGG 67035 37 100.0 37 ..................................... ACGTGCAACCGGTCCAGGGCCTCCGGATGGTCGGCGG 66961 37 97.3 67 ..............T...................... GATGTGGGTCGCAACGGGGTCGATGTCGATCAAAGCGGTGCGGCGGTGCTCGGTGCGGTCCACAGTG 66857 37 81.1 0 ....T.......TGT.........G.....C....G. | ========== ====== ====== ====== ===================================== =================================================================== ================== 6 37 96.4 43 GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Left flank : TGTGCGACCAGACGGGCGGCCTGGAGGCCGCCACCGCCGCACACACCGCCTGGAACGGGGTCCTCATGATCTCCGTGTTCCTGCTCTCCACATCGGATGCCGGACAGTCCACCACGGCCGTCGCGGCGACCCTGGCGACGGACCTGCTGCTGGTCGCACTCCTCGTCCTGCTCGCCCGCCGCACGGCCGTCGCCCGTCTGCGGCAGGCCGTCCCCGTGCCGGCGGCCGGCTGACCGAGGACGGCTGTCGACCATCGACGTCGGCAGCCGTCCCGCCGCGGCGCTGCCACTCCGCCGCGGCTCGCCTGGCCCCGCGCCGGTGGGCCGACCGATCTCACCACCGCATCGCGGCCGCGACGGGTGGTGGGGGTGTCATCGGAGTGGCGCGGGAGGGAGACGTCGTGCGACACGCCTGACCCTCCCGAACCGGCATCCGGGCGTGTCGGTCACGGTCCGCTAACCTCGGCGGTCGTGACACGACGACACCCCTGCTGAGGCAGG # Right flank : CGCGTGGGAGGCCGACAGGTGAACGCCGACGACAAGACCCTGCTGCTGGATCTGGAGAACCTGGGCAGCGTGACGTTGCGGCCGAGGCCGCTTCGTGTCCGCCTTGAGGCGCTCCTGGCAGCCGCAGGTGACCACCACCATGCCGTCGCCGCCTACGCCGTCGCCGACGGCACACCCGACGCGCTCTCCTCGGTGCTGGCGGAGCTGCGGATCGCTCCGCTTCGGGTAGCCCACGAGCCGAATGCCGCCGAGCTGGCACTGATCGCGCACGCCGAGCACGTGCACGCCGAGGGCGGCCGGGTGTTCCTCGTCGGCAGCGCGGACGGGCGACTGGCCGACCTGGTGTCGCTCGGTCGAGTCGAAGTGCTGGTGTGGGAGGGTTAGCCGGTGTCGGCCAAGCTCGCCGACGTCGTCCATGAGGTGCGCAGGCTGCCCAGGCCCACCACGGCGTCGACGGAGGACGTCTCCACGACGGCGGTGCCCGAACCCGAATGGACGCC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.70,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 211114-210709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000003.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 211113 37 100.0 37 ..................................... GCGGCCTGGGCCTGCCGCTGGAGGTAGTCGGACAACC 211039 37 100.0 37 ..................................... CCTGCAAGCCACGGATCGACCTCGGCTGCGTTTGCGT 210965 37 97.3 37 ..................................G.. AAGAGCGACAAGCTCGCGGGCGTGAAGATTCGCGGTG 210891 37 81.1 37 ...........CG...AA........C.....A.G.. CGGTACGCAGTCGCGGGCGAAGGCGTGTGACGGCTGC 210817 37 86.5 36 ..........G.G.G...G.......C.......... CGCCGGGCGAGGCGGCCTGCATCGCTCGCCCAGAGC 210744 36 89.2 0 ..................-.......T...C...G.. | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 92.4 37 GTGGCACCGGCTCTCCGGAGCCGGTGAGGATCGCAAC # Left flank : CAGGGCCAGATAGAGCACACTGAAGTCCAGGGACAGCAGCAGAGTGGGCAGGGCCAGCACCGCCAGCCCGAGCCACTCCCGCCTGCCTGCCCGGAGGGCGTCATCAGCGACCACGTCACCATCTCCTCGCTGTTCTCGGCCGTGTACGCACGTGCTGATCATTGAGACGGCAGACGGGCCGGAAACTGATCGCTCGAGGAGGACGGGCGATCCGCCCGCCGATGCCGATTCGGACGGCGATGTTCTGGCGGGGGAGCGGCTGTCGTGCGGCAGCGCCCGCCCGCGTGGTGACGTCAAGACCGTGCGTCTACCGGGGCGGCCGGACGGACAGCCGGAGGCGCCGCGACGACCGGCCGGGCCGTCGAAAGCGGCCTCTGCCAGGTTCGGAAGGCGAGGCGTCGGCCGACACGCCGGGACAGTCCGAAGTGTTCTGCGGGCGTGTCGGTCACCAACCGATAACCTGGGCGCGCTTGATCAGGTAATGCCCCTGGATGCGCAGG # Right flank : GGATCGTCGTCTGGCGGGGATGGACCACGGTCTGTGACACCGGCCCGTCGGGTCGGGGACCACAGCCGGGCCGCCACGCGGATCGTGAACGCCAGCGGCCTCCCCCACCGCCCTCGGGGCCGGTGCGGGGCGCGGGGGATGCCTGCGACGGGTACCGCCCGCCGGGCGCGCGGGGACGATCGCCGCCGACGAACGCCGATCCCCCGACCACGCCTCGCCGCATGGGGCCGCTGTCTAGCATGAGCCCGTGTCGACCCCATCTGACGCGGCCTTACTCGTTCTGCACCCGTCCAGACAGCGCCGACGGATGTCCGCGATCCTCGGCGTCGTGGTCTCGGCGTTGCTGATCGTGCCCGCCACGATTCAGGCTGGACTGGCGGGATTCCTCGTCACCTCGGCGTTCATGGGCCTGCTGATGGGTCTGGTCTTCTTGTCGCTGACACGATCACGGGTCGTCCTCACGGCGCATCGGATCGGCAGCAGGGGGATGTTCGGCGGAG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCTCTCCGGAGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.60,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 6 416217-415859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000003.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 416216 30 96.7 35 ................T............. CACGGCCCGTATATCCCTCGTTGGTGTCCTCACGA 416151 30 96.7 36 ................T............. ACGACGTCGAACGGCCGCCGATCCTGCCGTACCCGC 416085 30 100.0 35 .............................. TGGAACGCCGGAATGGAGCTCGACGGCTGCGCCGA 416020 30 100.0 35 .............................. ATGCGCCGCTCGCCGACCTGCCAGAGTCCGGCCCC 415955 30 96.7 37 ..................C........... GGCATGCGGATCGCGAGCCTCGCCCGGTCGAGCAGAG 415888 30 80.0 0 .....T..................CTTGC. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 95.0 36 GTCTTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : AATCAGTACCGCAGCCTGCTACGCAATCACCTGCTTCCCCGGTGGGGCGACGTCGCCATCGGGGACATCACCGGCATCGCGGTGGCCGCTTGGTCGAAGAAGGTCCGTGCCACCGGTCACGCCCCCGCGAGTGTCGCCACCATGGTCAAGCTCCTGTCGATGCTGTTGGCCGACGCCGCCGACGAACGCCTGATCCCCGCCAACCCGATCCGCCCCAGCCGCCGAGGACGCCGCCGACGTACGCGCGCCCCCGAACGGCAGTGGGCCACCCACGAGCAGGTCCTCACCATCGCCGATCAGGCCACCGCCCTGGGCGGCGCCTGGGCGGGGACCCTCATCATCACCGCCGCCTGGACCGGCGCCCGCTGGGGCGAACTCCTCGGGCTGCAACGGCACAACACCCACCTCGACGACGCCCGCATCGTCATCGACCCCGACCACGGCGCCCTCCACGAGATCAACGGCAAATTCAGTCTCGGCCAACCCAAGACCGCCGAATC # Right flank : TGCAACTGTGGGGCTCGGTGATCTGCCGTTGAACGAGTGGGGGGGGGGGGCGTCCGGGAGGTCGCTGCTCGCGGCGCGGTGACGCTGGTTGGATCAACGGTGTGGCGGGCCACCACCTTGGTTCCGATCTCGGCCGCGCGGCTTGACCGGTGCTGGGCGGGGTCCCATCGAGGTGAACCCGCAATGCACCGGCTACCCGTGTCGACTCGCTCTGGCATCCGAGCCCGCAGGAGGTCGGCCATCGGCCCATCGGGCTGGGGCGGGATTCGCCGGTTACGGCCGGATCTCGTTGTGGTTGCTCGGTGCCCGTCGGCTTGGTCGGCTTCGACGAGCTGCTGGGAGCAGCTGGTGGGGGGCGGAAGGGGTGCCTCCGGGTGTGTTCGACGACGCTGAACCACGTCCGACGGTTCCCCGAGGGGCTCGACCCTGCCTGCCGTGAACGTAGTGGCGCGGGTGGCGGCTCTTGCGAGGCGTCGTTCATATCGAAGGGTTCACCGGTT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : GTCTTCATCGCTCCTATGAGGAGTTCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 7 417871-417632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000003.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== =================================================== ================== 417870 22 95.5 50 .............A........ TCATTGCGGCTCGAAGACGCGGGGCACGGTCAGCACGAACGTCGGGTCGC 417798 22 100.0 51 ...................... TCATTGCGGCCACCGGACCGCATACGCGCTGTCCCTGCGGGCGCCGGTTGT 417725 22 90.9 50 .............T.G...... ACATGCGGCCGCCCGGACTGCCGGGTGCTGGGGACGCGCCGCGAGCGTTG 417653 22 77.3 0 C......T....T......AG. | ========== ====== ====== ====== ====================== =================================================== ================== 4 22 90.9 51 ACCCGGCCTTCACGGCCGGGCC # Left flank : ACATGCGGGCGGGGCGGTCGAACGTAGTTGTGGTCGCCACGATCCTCCCGGAATCCTCCCGCTTGCGGACATTTCGGCTGATCATTGGAGCGTTACGTGGTCACGACTACGGTCAACCGTCAGGCCTGAGCGGTCCCTCGTGCTGTCGTCTCCGGACGAGCAGCTGTGGTGCAGCGTGGCGACGTGGTCGAGTGCATCATCGAGTACATCTCGATAGCGGGCTGCGGCATTCCGGAGTGGCGGGAGCGGGCTTCGACTCGGCGACTTGAACGCCAGATGGGCCTCGGGGATGAGCGCGATCGGCGTGCCCCAGCGCCGGACTCGCGGCGCGGTTGGAGCGTCCACTGGACGTCCTTCTGCGCGGAGCTTCGGGGAGGGAAGCGTCTGCCGACACGCTGGATCAGTCTTAAGTAGATCTCGGGCGAGTCGTCCATGATGTCCGGATATCGGCGAGCCCGCCAGACTGTGCCAGCCGATCAGCCCTGATCGGGCAGGGTCGC # Right flank : CTTATTGCGACATCTAGATGGCCATCGTCCTGGCGTCCCGTGGCGAGTTGCCCCGGACTGTGCGGGCTTGGCCGTACTGCAGGTCGACCGACCGGAGCCTCGGGATCCGCTTGATCATCGCCGGGTGAGGTGTCGGGTCTGAGGGGGTGGAAAGTCGTGGTTCTGCTGTCGAATTTCGGCTTTCTCGGCGGAGTTCAGGGGTGTCAGCTCCGACTCGCCTGTGGAGGTCTTCGTGAACCTGATCGACAGCGGCACTGCCTACCGTCCTCCTTCGCGGTCACGAGGGGCGTCGTCTGCGGCGCCTGGGCCTGAGTCGGGTAGCTCGACTATCTCTAGGACTGGAGAGAAGGCGGTGAGTCCTCGGGACAGGTCGGTGTTGTTGTACAGCCCGGCCGAGGCGGCGCGGTTGTTGGCGGTGCGGGAGTCGTGGTTGCGTCGTGCGGCCGGGCGTCGGTTGATTCGGTGCACGTTTCTCGGTAAGCACCTGCGGTTCTCTGAGG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:-0.25, 7:-0.35, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGGCCTTCACGGCCGGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 8 627066-626610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000003.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 627065 29 100.0 32 ............................. GGCCGAAGGACGCGGGTACCTGGTCGACGGAC 627004 29 100.0 32 ............................. ATGATGGATTGCTCGAACTAGGGTGGTGTCAG 626943 29 96.6 32 ............................T GGTTACGCCTGGCATGACAACCGCTGAGACGA 626882 29 100.0 32 ............................. GTCCACTGGGCAGGCGGCATGGACGACGTCGT 626821 29 100.0 32 ............................. CTTTGGTACATGAGCAGCGAGAACGTAATCGG 626760 29 96.6 32 ............................T CCGGGACGATGGACCTGTCGACGGCCACCGGC 626699 29 100.0 32 ............................. ACCGACTTGCCGCCGCCTGGTCGGGCGGCGAC 626638 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 ATCGGCCCCGCGCACGCGGGGATGGCTCC # Left flank : CCCGTGTCAAGCAGGAATCCCCGGTCGTGGCCAGCGTGCACTACCGTGCCAACGGCAGTGTGCCGCGCGGCACCTGCGTCTTCTGACGCCCGCGCCCACGAATCGCCCTGTCGCCTGCTGAGCCGATCGGCAGGTGAGCGGTGACGGCCGGAGTGAGACCAGCCCTACCGCCCTCCGCAAGCCCGGACCGGCGGCCTTCGCCCGTCTGTGTGGCCGCGTTCGGGCATGCACGAAGGCAGCAGGCTGCCGTCGCATCAGGTCGGTGCCGCGTACTGGCGGTGCGGTGCGGATCCACCGCTGCACGGCGGGCGAAACCACGTGTCGTCGGCCGCGACTGTCGTCTCGTCGTCGGCGTGACCGGGTGGGGTGCGGGACGGCCGCCGAACCCTGTGACGGGCTGTACCGCTCCGGCCGAGGGCGAGCACCCTCCACTCTGGAGTGACCTGTATCACGTGGTCGAAAACGGTGTTCCGAAGCTCTAAACTTCCTGGTCAACAAGT # Right flank : GCCCTACGCCAACACGCTCTGGCCGAACACGACTCCCCCTGTGGTAGCCAGCCCTGCGGCAGCCGCCGTCGACGCCCGCGACGGCGGGCGCCCGTCTCGGCCGCTGCGTCCGCCCGGTCGTGGCTCGGAGCCCGTCTCGGTGTCGGCCGTCGACCGATTCACCGGCGAAACCGGCTGCGTCGCGGGGCCTCGGCGGTGTAGATCAGTAACCGACGGCTCCCGGCCGAACACTCGACGTCCGCGCGGGGGCCGGGAAGGAGCGTGACGTGGTGAGCGTCGAGGTGTCGATCACGCCGGGAACGAGTCGGTACGACGAGGACGAGGAAGCCTGGCAGAGCCAGGTGTCGACGCTGTACGCGGCGCTGCTCGACGAGGTCGGCGGCGTCACGACGGGCGGTGCGGCCGTGCCGGGCGCCAAGGGCGCCTGGGACACGGTGTTGATCGCGTTGGGCTCCTCCGGGGCGCTGACGGCGGCCGTGGCCTGCTTCCGATCCTGGTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCACGCGGGGATGGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 628426-627787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000003.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 628425 29 96.6 32 ............................A CCAATCAACGACTGCAAATCCTCCCCGCGCAG 628364 29 96.6 32 ............................T CTCGCGACGGCACTGGCCCTGGCTGGCCAGTC 628303 29 100.0 32 ............................. TCCGTGCCGCCCCGGGCACACCAGACCTCCAC 628242 29 96.6 32 ............................A AGCCACAGCAAAAGAAGCTGAAGATCTAGCTG 628181 29 100.0 32 ............................. TGCCGCACTGCGGGAGCACCAGGCCGACGACC 628120 29 100.0 32 ............................. TGCGGGGAGTACTCGGTGAACGTGTCCAGCTG 628059 29 96.6 32 ............................T CCGGCGGCATGGGGCAACCGAAAGCCGGGATA 627998 29 96.6 32 ............................G CGTTCGCGCGAGTTCAGCGACGGTCGCCCACG 627937 29 96.6 32 ............................G CCACTGAAGGGGACCGCGGCGGCGCTGTACGA 627876 29 100.0 32 ............................. TGAGCGAGCGGTACCAGGTCTCTCGGCAAGTG 627815 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 ATCGGCCCCGCGCACGCGGGGATGGCTCC # Left flank : CGTCGAACCCCGGAACGACTCGGCGACGTCGCTCGCGACGCGGGCCTCAGCGAACGCAGGCTGCGCACCGTCTTCACCAGCGCCGTCGGCCTCTCGCCCCGTCGTTTCGCCCGTGTCACCCGGGTGCGGACGGTCCTGGCCGCGACCAGCGCGGGCGTGGACTCCTGGTCCCGGCTGGCCGTCGACGCGGGCTACTACGACCAGTCGCACCTCACGGCCGAGTTCCGCGAGGTCATGCAGGTGACGCCGGGCCGCTTCGCGGCAGGCCGTCTGCCCGAGGCCGCGCCGTGTCGGAGCTGAGGATCGCGCTGCCTCGCCTGAAGAGCCTCGTGGACGGTCGTGTCGTCGACGGCGTGATCGAGCAGGCGCGGTGGCGGCAGCCGAACACCGTGGCGCGCGGTGCCGCTCCGACCGAGGACGGGCACCCTCCACTCTGGAGTGACCTGGATCACGTGGTCGAAAACGGCGCTCCGACACTCTAAACTCCCTGGTCAACAAGT # Right flank : CAGGCGGCGGTGGAACGATGGCAGGGTGATCGTGCCTTCGGCGTCGCTGCGCTGGGGCACGGCCTACCTGCACCAGCGGGTCAGTGTGCGCATCGACCGTCCCGCAGGAAGCCTCCACCTGCGGCACGGCTACCGCTATCCGGTGAGCTACTCGAGGGACTCCGGGTTCCTGAGCCCGGAGGAGGAACGGGTCTGGGCGGACAAGGGTCGGGTTCTCGCAGCCCGTGTCAAGCAGGAATCCCCGGTCGTGGCCAGCGTGCACTACCGTGCCAACGGCAGTGTGCCGCGCGGCACCTGCGTCTTCTGACGCCCGCGCCCACGAATCGCCCTGTCGCCTGCTGAGCCGATCGGCAGGTGAGCGGTGACGGCCGGAGTGAGACCAGCCCTACCGCCCTCCGCAAGCCCGGACCGGCGGCCTTCGCCCGTCTGTGTGGCCGCGTTCGGGCATGCACGAAGGCAGCAGGCTGCCGTCGCATCAGGTCGGTGCCGCGTACTGGCGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCACGCGGGGATGGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72911-72455 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000007.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 72910 28 100.0 33 ............................ TCAGCCGCGACCGGTGCAGGTCCAGCACGGCGG 72849 28 100.0 33 ............................ CCGTCGGGCTCGACGACCGGTTCAGCAACGGCG 72788 28 100.0 33 ............................ CTCGCGCACCTCCACCGGCACGTCGTCGGGCAG 72727 28 100.0 33 ............................ CACGATCTACTCGGACTTGGTCTCGACATCGCC 72666 28 100.0 33 ............................ GCGACATCGTGTCGACACCGGTCGTCACCAGCA 72605 28 100.0 34 ............................ ACCGCCCGTCGAGCTTGGCCTCTCAATGGACACA 72543 28 100.0 33 ............................ TCCCGAGTCCAGGTAGTTGACCACGGATTTTGC 72482 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 33 ATCGGCCCCGCGCGTGCGGGGATGGCTC # Left flank : ATATTCCGCTGTGACGGCGGGACGTGGGGCCGGGCTCGGGCTCGGGGCGGGTCCTGGGCGTGTACCGGGTCCCGGGCCTCGGCTCGACCTCGGTGCCCGGCGCACGTCGAGACTCGACGACGCGGCGGTGGGCGAAGCCTGCCCGGCAGGACTGGAGGACGATCATGAGTGATGATGCCGAGGGTCGACAGGGCCGACCGGTGCTGCGGATCATTCGAGGCGAGCCCGACGACGTCGAACTCGCCGCGCTGACCGCCGTCCTGGCGTCGCTTCCCGCAGCCGCCCCGCCGGTGACAGACCCGGAACCCGCACGCTCCGGCTGGGCCGACCGAGCCGCTTCACTGCGCCGCCCGCTCTTCCCCGGCCCCGATGCCTGGCGCCGATCGGGGCTCTGACGGCATGGGCGGGGTCGCAGCGGCGGACCATCCGACCGGTATCGTGACGCGTATCACGTGGTAGAAGACCGGCCTGGCGCCGAATAAAGCCGCAGGTCAAGAAGT # Right flank : GCGGTGCGGGGATGGCTCCTGCACGCTCCACGGCCGATGGCTCGTCGAGACATCGACCCCGCGCGGGGGTGGCTCGCCGTCGCGGCCTCGCGGCGGACCCTGCCGCGCCGGATTCTTAGTCGTCACACGGCGATGATCTTCGACCTCCGGCCCTCGGCACACAGGATCGCCGCGACCGACACCCACTTCGACCACACGTCGCAGTACACGGGGAGTTCCGCACGGTTGATCCAGGCGAGTGAGCAAACCGACGGCCGCCAGCTCGACCTTCGCTGGCGGCTTCGACGATGCGTCGCGGCGCCCGGGCTGGGCTCGCAACCCACGGACGTTGTCGGGGCTCAGCGGGACGATGGAGCCGAGGAGCAGCGCATCACGGGCCTCGCGGAAGAACACCAGCTCGGCCGGGTGGTCGCGGGTGCGCCGAAGGCTCAGCCAGCCGGTCGACGTCAACGAGCAGATCGCTCGGCCCCCTGCGTTCGAGTGCAGCCGTGGTCCTGCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCGTGCGGGGATGGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 338534-337839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000007.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 338533 29 100.0 32 ............................. CGGTTGTCACGCCGCCGAGTCCACTGGGCCAT 338472 29 100.0 31 ............................. GTTCGGTTTCGAACGTGGCGTTGACGGTCGG 338412 29 100.0 32 ............................. GCCTGGTCGACGGTCCGACCGATCTCGCCGAG 338351 29 96.6 32 ............................G GCGCTGCTGTCCGAGATCACCGACCGGGCGGA 338290 29 100.0 32 ............................. CATCACCTCGTCCTCGTCGAGCACGGGCGGGT 338229 29 93.1 32 ...........G................G CTGCGTGACACCGAGACCGTCGAGCGTGGGGC 338168 29 93.1 154 ...........G................G ACCGCCGCCGCGTTGGACCGGGTGCTCGCCGTGGCAGCCCCGCGCGTATGCGGACGATTCTCAGGCGACGCTGTTCGAAAGTCGTGGAATCGAATCGGCCCCCGCGCGGGGTGGGCTCGTGGCGCACTCGGCAGGTCGGGACGCCACCGTGGAC 337985 28 75.9 31 CA....T.-........A.......T.T. CAAGGCACCCTGGCTGTTCCCGCGAATCCCG 337926 29 72.4 32 .C......G..G..G....ACC..A.... TACCCCGATGAATCGAACTACTGCCGGCCATG 337865 27 79.3 0 ........-..G...A....-..A....G | ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 10 29 91.0 45 GTCGGCCCCGCACACGCGGGGATGGCTCC # Left flank : CGGCGGCGCCCGACTGCCCACCGAACGGGAGATGGCCGCGACGCTGGTGCTCGCGATGGACCTCGGCGAGGCATCGGTGAAGGTACGCACCGGCCCGCCCGGCGACGATGAGGACGACGTGGCGGCCGACGAACACTGGGCCGGGGTGCTGCCGCTGAAGCAGACCTGGGGCAGCCCGGAGCCGTGCCCGCTGCTTCCCGCCGGGCGACCGATCCCTGAGCGCGTCAGCGGGCGCTGATCCGCCCATGAGCGTCGGACGTCGAGTATGCCCAGAGGAACGATCGATCCCGTCCGACGTCACCGAACCGGCTCCGCCGAGCCGTGCGGGGAGGCCGTCACGCGCACGGCCGTCCATGGAAGTCGCGGCACATACCCGCCCGGCCGACGAGCCGAGCACGGACCGCACAAGGCACCCGATCACGGACGAGGCGCCGACATGTAACGTGGATCACGTGGTAGTACAGGCTTGCCGGCCGCGATGAATCCGCTGGTCAACAAGT # Right flank : CACACTGGACGCCAGGCAGATCCCCACTGTGCATCGGCCCGCGCACGCATGGCGGCTCGACAAGGCAGCGTGGTCGACGGCGTCGACTGAGCGCAGGCCTTGGCGCACGGGAGGCGCTCTGGCAGGGGGCAAGCACCGTCGAGGCGGTCCCGCGATCAACACCGCAGCCGGAGCGATCACGGCGTCGCTCACCGTTTCCGCCTGGGGCATCTCGACCGCGCCCGCGTCGGGCCCCGGGCGGGTTCGGACCGACCCGTCCGCAGTGGCCTCCGGCACCGGGGGCGTGCTCAGTGCGTCCGGCCCGCATCCGTCCGGGAGAAGGGCCTCCGCACGCGAAGTCGCCGGTTACCAGCGGCGGCGCCCCGTGGGACGCAGGCCCTCGACGGCGTCGAACTCGTACTCGTTCATCTCGCGCCGTTCCCGACGGTAGACGTGCACGCTGACCGCCGGGTCCGGGCCCTCGTTGACGACCTCGTGCACGTAGTCCGGTCCGAAGACGC # Questionable array : NO Score: 4.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.32, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGGCTCC # Alternate repeat : GTCGGCCCCGCGCACGCGGGGATGGCTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 342111-341096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000007.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================================================== ================== 342110 27 67.9 230 CG..T.A....G...-.....C.C..G. ACCGGCTGGACGCCCACGCAGCGGACCGCCCCGGCCGGACGATCGGACGACCGTTCGTGGCTCAACCGGCCCGGCACGGGCGTTCCCAGCACGAACATCATCGACTACACCGTTCGATACGCTCAGCACGACAGGTTCCGAACCGACGCCCACAGCTCCAGGAGATGGTGACGTGGATCACGTGGTAGAAATCGGCCCTCGGCCACGAATAAACCCGCTGGTCAACAAGT 341853 28 100.0 33 ............................ TTCACCGCCGACGACGTGCGGCTGTTGATCCCG 341792 28 100.0 33 ............................ TTCCTCCTGGTCAGTCGTGGTCGTGCTGGTCAG 341731 28 96.4 33 ....T....................... CTACCCCTACGCGTCGTCCATCGCGGACACTAT 341670 28 96.4 33 ....T....................... CTGAGGGAGTGAGTCATGCCCCTGCAGATGGAG 341609 28 96.4 33 ....T....................... GCATGGATGGCGCCAGTGTGCCGAGTAGCACGG 341548 28 96.4 33 ....T....................... GACATGCTGTCCCTCCTCGGCGGCAAGGTCGAC 341487 28 100.0 33 ............................ TGAGCCATGGGCAGGCGGGCATCAGCACCAGCT 341426 28 100.0 33 ............................ CCAACCAGCCGGGCGCGATCGCCGGTGGTCGGT 341365 28 100.0 33 ............................ CCGGCTTCTCGCTGACATGGGTGCGGCCGTGAC 341304 28 100.0 33 ............................ GGCCAGGGATACGGACTTCGGCCAGTACCTGGG 341243 28 100.0 33 ............................ CTTGTGATCCGCATGTCCCGAGCCCGTCGCCGC 341182 28 100.0 31 ............................ CGACTACGCATGGGGTGGCGAGGTGGGAAGC 341123 28 60.7 0 CGTC.G..G....CG.....CG.C.... | ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================================================== ================== 14 28 93.9 48 GTCGGCCCCGCACGCGCGGGGATAGCTC # Left flank : CCACCGTGGGCAGAACACGGTCACGGATCTCCAGCTCGCTGACGTCGGAGGTGCCGACGACCCAACGGCCTTCCTGGCTGATGCCCACCGGAACGACCTCGTAGCGCTGCGGGTCGAGGTGAGCCAGCACGCTGGCGGCCGACGAACACGAGATGGCGTGTTCCGAGCTCCGCCCGCCGAAGACAACCGCGACGCGTGTTCTCCGCTCCGTCATGCTGCGTGACCCTACCGGCACGAATCCTCCCTCGATCGGCGCAGCGGCAGGCGTCCCCAGGTTTCCGCCGCCCCAACACACTCGATGTGACGAATTCGGCACGCTGGCGGACATTCCGGTCGCCGTCACCCGCCGATCCGTCGTGTCCGACAGCGAGAAGCACGGGTGGGCGCGTCCCCCCGATCGACGAGGCTCTCGAACACAGCGTGTGCGGCGGCCCACCTGAACGAAAAGCGGTCACCCGTTCCGGTGGGCCGTCCCCGAAGACGCACCCACCGACCGGCGC # Right flank : GTGACGGCCGAGCGTCCTGTCACGACCGGATACAGTCGCCCCAGCGAGTCGGTGACGTGCCATCAGGCTTCTCCGGCGCCCCGATCCGCTCACTCGGCGTCCAAGTCGGCAGACCTGCCCGCCTCGTCCGCGAACAACTGGACGATCTCCGGCAGTGCCGCGTCGAACTCGGCAGGCGTGCAGGCCGCGTAGCCCAGCGGCACGCCGAAGAGCCTCGGCGTGCGCTGATAGTGGCGAGCCAGGCCGTCGATGAGCACACCTGCGGCCGCCGCCTTCGCCGCCACCCGCTGCTCCGCCGCCGCGGAGGCCAGTGGGATCACCACGTGCGCGCCCGCCTCGTCTCCGAGAACCTCGATGCCCTTCTCACCGAGCGCCTGCACCAGCCGGAGTCGCCGCGCCGCGAGCTCGCGGCGCATGCGGCGCAGGTGTCTCCCGAGGTCTCCGTGGCGAGCCAGCTCGACGAAGACCCGCTGGCCTGCGGCGGGTGGACCCGCTCCCGC # Questionable array : NO Score: 4.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-1.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATAGCTC # Alternate repeat : GTCGTCCCCGCACGCGCGGGGATAGCTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 343568-344267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000007.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 343568 29 96.6 32 ............................G GCGGCGTGGACGGCGTTCGCAACGGCGCACGG 343629 29 100.0 32 ............................. GCCGCCGTCGCCACCCTGCCCCCGCGCCGCCC 343690 29 100.0 32 ............................. CCGATCCAGGTCCGCCCGCAGCTGCTGGAGGG 343751 29 100.0 32 ............................. ACGCCGAGGTTCCGGTCCCACGCCGTGATCGC 343812 29 96.6 32 ............................G GCGGCGACGTCTCCGGGCGCGGTGCGTTCACG 343873 29 100.0 32 ............................. TGCGCGCGGCCATCGACGACGCCGAGGCCGCC 343934 29 100.0 32 ............................. GGACTGGCCCGCGGCGCCACGACACCCCGCCG 343995 29 96.6 32 ............................G ACGTCCTCTTCGACATCCCAGATGACGCGGCC 344056 29 96.6 32 ..........T.................. GTCCCCCGGTCCCTCACGAACGCGGCGACGTC 344117 29 100.0 32 ............................. GCGGTCGTCGAGCGCGTCCACCGCTGTACCGA 344178 29 96.6 32 ................T............ GCGCGGCCAGCAGCGGCGAGAGCTGTACTGCG 344239 29 86.2 0 ..................A..G...TG.. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 ATCGGCCCCGCGCACGCGGGGATGGCTCC # Left flank : GAGCGCGGTGGTCGGTCGCGAGATCGAGTGCGGCGTACTGGAGTTCCCGGACGGCCGCGTCGAGGCCTCGCTGCCCTCGGAGATCCGGGTCGTCGACGGCGCGGTCGACTGGTACGACTTCGACGCCAAGTACCTCGACGAGTTCTGCGAGATCGACATCCCGGCGAAGCTCGACGACGACGTCACCGAGCGGCTGCGTGCCCAGGCGATCACCGCCTTCGAGGCACTCGACTGCCAGGGACTGGCGAGGGTGGACTTCTTCGTCACCGAGGCGGGTGAGTTGATCGTCAACGAGGTCAACACCATGCCCGGCTTCACCCCGATCTCGATGTACCCGAAGATGTGGGCGGTGACCGGCACGGACTACCCGTCCCTGCTCGACACGCTCGTCCAGACGGCGCTGGCCAGGGGTACCGGGCTGAGATGAAGCGCTCTGTAGTGACCTGGATCACGTGGTCATTCTGAGCCTTGGGGCGAGATGAACCCGCAGGTCAACAAGT # Right flank : CAGCGCGAAATAGCGCGGTAGAACTAGAGTGCCGATCGGTCGCGTGCCTGTTCGTAGGTCCGACGCGTGGGAGAATGCGGGATTAATTCATAAACTTGGAAGGATCTCCCACAGGGATATGGCGCTCGGCTGATGTCGTTCGGATTGTCTTTTATCTTCAAGTGAGTTGATGTGCGTTCTGCCTCCGTGCTGCATTGGTCTGTCGCCGCATCGCTCGATCGGGTGGTGCTGTGCGCGATCATGCCAAAACCGAACGAATTCGTCGGTATCGTCGATCTTATGAACCCGTTTGCGACTGTGCCGCAGCGCGCGGCGCTACTGCTGGACTCCATCGGCGACATCTGCTCTTCCTGCGCGAGTGCGGCCGAGGTCATCCGCTCCTCGGGTAGCGCTTCGGTGATGCGGACGTGCGCGCAGGCCTGCCGTCGTCTCGCGGAGTTGATAAGGCGGGGGAGACCTGGCGATGTGGTCACCCCCGCTACAGTGAACTGACCGTCCTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCACGCGGGGATGGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 355249-355760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000007.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 355249 28 100.0 33 ............................ TCCCTCCCGGAGCTGCTGGACGCGCTCGTGTCC 355310 28 100.0 33 ............................ GACGAAGGAGGTCACCTGATGTCCCTGCCCACC 355371 28 100.0 33 ............................ GCACTCGCACGGGCGATCGGCGCCGAGCTACGG 355432 28 100.0 33 ............................ CCGCCAGCCGGCCGCCCTGCTCGGACATGATCG 355493 28 100.0 33 ............................ CAGCGCCTCGACGACGACCAGGTCAGCGGGCAG 355554 28 100.0 33 ............................ GCAGATTGGGACCAGGCGCTCGACGAGTGGGCG 355615 28 100.0 33 ............................ TGGACACACACAACAATGGGCCGCCCACGGGGT 355676 28 100.0 31 ............................ CGACGAGCGGCGCCCGCCTGAACCCGGAGAC 355735 26 82.1 0 ...............-.-...CC....T | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 33 ATCGGCCCCGCACGCGCGGGGATGGCTC # Left flank : GCGCGATGTCCGACTCCTGCCAGGTCAGGCCCGCCGCCCGCACCGCCCGTGCTCCCTCGGGCCACAGCCGCTGATGAGAGGGCGTGGCCTTCCCGCAGTCGTGGATTCCGCACAACCAGGCGAAGAGCCGCCTGCCGCGCCCCGGACCGCCCGCCACCTCGTCGAGCAGCGCCCGCGTGGACGGCGCCAGGAAGTGATCCCAGATCAGCTCCCCCACCGCCGCCGTGTCCAGCAGATGCGCGATCAGCAGGTTCGTCCTGCCGCCCGCCTTCTCCTTCGACTTTCCCCACAACGTCCCCAGCCACCGTGCCATTCGCGGGTCGACGTCGTCGTCGAGCTCCATCACCCCGTCCCCGTTCTCCTCCCCGAAGCGGAGAGTAGTGATCGGCCCTGACAAGATCGCCCGCAGTGATCGGCGAAGCGGCGAGACGGCAGTATGTGACCTGAATCACTTGGTAATTCGGTGGGGGTCGCCGTAGTAAAGTCCCAGGTCACGAAGT # Right flank : TCCTCGCGGGTCGATCGGGGTGGCGATCCGCGCCGGGGCGCCTCCGTACGAGACGGGAGGGCGGGCGACGGGCGGCCGCGGAGCGATTCCCACGCCGCGGCCGCGGCACTGGAGCATCTGGTCGCCGGCCTCAGCCGGTGCGTCTGCGGAGGAGCCAGACGGTGCCGCCGACACAGAACGTCCCCAGAACGAGCAGGACGCCTGCCTCGATGGACTGCAGGAGCCAGTAGCGGTCCGCCGGGTGGTAGCTGACGAATTCGTGCAGACCGTCGGGTAGTGACCATGGTTCGGCGTCCGGGTCGGCGTTCCGATGTTCCCAGGTCAGCTGATAACCGTGCTGATCGGGAATCCGATGACCGGCGTCGTCCTCGAAACGGGTGCCGAGGTAGAACGCCGACGGATCGACGGGCGTCACCGAGTATCCGTCGCTGTCCCCTTCGTATTCGAAGTACTCGGCCGAGGGCATCGTCTCGGGAGCGGTGTACACCGTGAGGGCGAAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCACGCGCGGGGATGGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 6 376534-376794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000007.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 376534 38 100.0 36 ...................................... ACTTCGAGGACGAGGAGATCGAGGAGATCGCGGCTC 376608 38 100.0 36 ...................................... GTGTCGCCGCGAAGTCAGCCGCCCGCGACAGCAAGA 376682 38 92.1 37 .........G..........................TC GTCCGGGACGACGCAACAGCCCTCGTGGCCTGCCGGG 376757 38 94.7 0 .........G........................G... | ========== ====== ====== ====== ====================================== ===================================== ================== 4 38 96.7 37 GTGGCACCGACTCTGCGGAGCCGGTGAGGATCGCAACG # Left flank : CACGATCGACGTGGAACGGGAACGCGGGGAGGCGATCCGAGGGTTCGCCGAGCTGACACGGCGAGCACAGGCGAGCGGACGGCTGCGGGCCGACTTCACGCCCGCGGACCTGACGCTGGTGCTCATGGCCAACGGCGGCATCGTCGCGGACTCCGCCGAGATCCGGGAGGCCGCGTCCCGCAGGTTGGTCGCCTACCTGATCGAGGGGTTTCGCGCCGACCGAGGCGAGCCCGCCGCGCCCCTGCCGCCCGCCGCTCCGCTGCGTCTGCGGGACGTCGTCCGCTGAGATCGAGAGGGTGTCGCCTCGGCCCGCCGCGTCCCCGGCGCGAGATCGAAGCTCAGCTGAATCGGACGTGCCGGGGGTTCCTGGCGGGCCGGGTGCTTCGGGACCGGAGGCGTCGGCCGACACGCCGGGTCGGTCCCAAGCGATCTGCGGGCGTGTCGGTCACAAGCCGATAACCTGAGCCCGTTCGAACAGACGACACCCCTGGCAGGCCAGG # Right flank : GGCGGCCGAACCCCGCGGAGATCTCCGGCAGGCCGGAGGCGGCGGATGCCGCCGAGCGGGCATTCCCCGACGGGGTGACGGCGAAGGCCGCGCAGTATCCACCGATTCGAGATGCCGATCACATCGTCGGGAGCAGAAGACCGTGCCTTCTTCTCCTGAGAGAAAAGTGGTGCGTTCGACCGTTGGGAGAGTCCTCCCAGCGGGCGGGAGGAAGCCGGTACGGTCGCCGGCAGCGAGAATTCGCTGATCGGAAGGGAGCCCGTATGTTCCGGAAGGTCCTGGTCGCCAATCGAGGCGAGATCGCGATTCGGGCGTTTCGCGCCGCTTACGAGCTCGGGGCGGGAACAGTCGCCGTCTTTCCGCATGAGGACCGGAACTCGGTGCATCGGCTCAAGGCCGACGAGGCCTACGAGATCGGCGAGCCCGGGCATCCCGTTCGCGCCTACCTGTCGGTGGCCGAGATCGTCGCCGCCGCCCGCCGCGCGGGCGCCGACGCCGTC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGACTCTGCGGAGCCGGTGAGGATCGCAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.40,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 111869-111610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000009.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 111868 37 97.3 37 ................A.................... GCCTTTCGGCAGTCCCCCAACGCGGCCCGACCGATCT 111794 37 100.0 36 ..................................... ACTGTAGAGGGTTGCGGCGGGACCACCCCGAAACGG 111721 37 100.0 38 ..................................... AGCGGTGTCGAGGCCGAGTGGTTCGACCTCTACCTGGG 111646 37 97.3 0 ..............................C...... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 98.7 37 GTGGCACCGGCCTTCCGGGGCCGGTGAGGATCGCAAC # Left flank : CCAGGCGGCCGGTTTCCGCGCCACGCCGAAAGGCCTGCGACTGCGCGGCTGACCGGTGGACGGGGCCGTGTCGGGATGCGGCGGGCCGGGTGTACCGGGCCGGGGTGTGCCGATCAGAGCACGACGTCGAGTCCGCCCTGCCCGAGGTCGTCGCGTTGAGTTCGACGAGTACTCGACCGCCGAACCCGGCCACCGGAGCCCCACGACCCGAGCAGGACCACGGATGGACAGCAGGCCGCCCGGCGACCCGACCGTTCCGGACGGCGAGCACCGCCTGCCGGAGTCGAGTCGCCGGACACCACGCGCGCAGGCGGGACGCCGACACGCGAGCGCGCGAACCGATCGGCCCGGCCCGACGAGCACCGCGATCCGCCGCAGGCGGTTCGGAAAGGCAGGCGTCGGGCGACACGCCGGACCACTCCGAACCGATCACCGGGTGCGTCGATCACCGTCCGATAACATCGCGGTGCACGAGAAAGGATCGTCCCTGCACAGCCAGG # Right flank : GACAAGGTGAGTAAGTTGATCGATCTCGTGGCCGGCAGGTGATCACGGTGACGCCGTCGACGTCGCTGTCTCGACGCGACCGAGGGCGGGGTACCGCAGCGATGACGGTGCGGCGGTCGTGCAAGCCGGTGAGGAGAACCGCATCGTCCGACGCGAGGCAGGTCGCGACATCGCCGGCATCGGTTGCCTCGACGCGAGGTGCGCTGACTGGTCATGTGATGCGGCACCTCCACGCGCAGCTCACCGCCGGCTTCACACGATGTCCAGCGACACTCTGTTGATCTGTCAACCGCGCGATGGCGACTACGCGCACAGTGGAGATCCGATGACGACGACCGGCATGTACCCCGTCTCGATCAAAGGTGTCGTCATCCGCGACGGCGCCGTGCTCCTGTTGCGCAACGACAGGGAGGAGTGGGAGCTTCCCGGCGGACGCCTGGAGCTTGGCGAGACCCCGGAAGAGTGCGTAACACGGGAAATCATCGAAGAGACATCGTGGC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCTTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.60,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 112734-113236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000005.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_05, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 112734 30 100.0 37 .............................. TCGCCAGCCACTGCGCCGCGAAGTTCGCCGTGTTCCG CA,C,TG [112737,112741,112743] 112806 30 100.0 36 .............................. TGGTGTCCAGTTAATGGGCGGGATGCGGCGGTTCGT 112872 30 100.0 37 .............................. CGTCATGCCGCCTCATCGGCACCGCCGGGCCGGACGT 112939 30 100.0 36 .............................. CGTCCCCCGCCGGCCGACCGGCGGACGGGTTCGAAT 113005 30 100.0 38 .............................. ACGGGGCCGATTCGCATACAGCACCTCGCCCGGATCGG 113073 30 100.0 37 .............................. GGGAGCAGCGTCCCCCCGCCGCGTCGGGGCGGGTCGT 113140 30 100.0 37 .............................. TTCGTCCCCCCGCCGAATTCCGCGATAACCCCCGTGC 113207 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 37 GTTGGAACTCCTCGTAGGAGCGATGAAGAC # Left flank : CTGGGCGTGATTCAGCGTCGTCGAACGCGCCCGGCAGCTCCCATTCCGCTCCCAGCGGCTGTGCCCGGCAGCTCGTCGAAGCCAGCCGAACCGACGGACGCCCAGTAGCCACGACGAGGTCCGGCGGTCGCCGGCGGATGCCGCCCCGGCCCGATGGGGCGACGGCCGACCTCCTACGGGCTCGGATGACCGAGCGAGTCGACAGGTGTGGCCGGTGCATCACGAGTTGGCTTCGATCGGCATCCGCCTAGCAGCCATCGAGCCGCGCGGCCGGGATCGGAACCGCGGTGGCAGCCCGCCGTGCCGTCGATCCAGGGCAGCGTCGGCGCGCCGCGAGCGGCGGCCTCCCGCGTCGTGTCCCCGACTCGTTCGGCGGCGGATCGTCGAGTTCCACGGCTCAACGTAGCGAGCCGTCTTCTCGGATCGTCAACGAGCGTCGGCGACAGACTTGTGTGGGAGCGATGACGACGCAGCGCCCCTCCTGTGCCCGCCGCCTCGAG # Right flank : CCCGAGAGTAAAGTCGCAGGTCACAGCACCTTCGGGGAGGCGCCGGAGCAGCAGTTCTGCAGCGTACCGGAGGTGTGACATCAACCCCCGGGGGTCTGCTGAAATCGGCGGCTCCCGGGACGCCGGGTGGCTCGCAATCGCGAGGGCCGCCGGGTGGGTTGGATTCGGTGTGGGAAGCCGACGGCGGCGGGCACGAGGAGAGGCCGACGAGCCCGATGGAGACGAACCGGCCGGGGGTCGCCGTCTGCTCATCGAGGTCGCGTGGTGGTGGTCAAGGACGACTGAGGGCGGGGAAGGGCTCGTAGGCGCTGCCGCCCTGGGTGCGGGTGAAGGCGGTCCAGCGGTCGTGTTCCGGCGCGGCCAGGCGCGCACCGAGTGCCACGGCGATGGCGACGGGGCCGTTGAGGAAGATCGCATGCCGTCCGTTCCTGGCTCCTTCAGGCAGCGGCGCCGCGCGCCAGGCACGACAGGTCTGCTCCACCACCCCGCTGAAGGTCTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAACTCCTCGTAGGAGCGATGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 115356-114927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000005.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 115355 30 100.0 38 .............................. GCGTTGGGTGCCGACCGGGATCACGATCCGCAAGCCTG 115287 30 100.0 37 .............................. GTGTTCAGCGCGGACGCTGTGGTCATCTCCGCCTCCG 115220 30 100.0 36 .............................. ACGCCTGCTCGGCGGAGGTCCGGCCCATCGCGGCCC 115154 30 100.0 35 .............................. TGCACTGGGACGAGACGCTCGGGCGAACCTCAGGT 115089 30 96.7 36 ........................G..... GCGAGCACGGTGTCGATCGTTGCGACGATGTCGGTC 115023 30 90.0 38 ..........TT....C............. AGCGGCAGCCAGGCGATGACGTGCCCGACGCTGCCGAC 114955 29 80.0 0 ...T..G......-.GT..A.......... | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 95.2 37 GTCCTCATCGCCCCTAGGAGGGGTTCCAAC # Left flank : CGACGCAACAATGGGGTTCGCGGGTCGGACATGGTCGCGCGCGGTCCGCTGTTCGAATCTCCACGGAAGACGGCCGAGCGATTCGCCACTGACGAGGCAGCCGTCAACGGCACCCAGGCAGTGAAGGCTCTGCTTCCGCATCGGGGAGAAGCGCGCCCGACCGTGCCGACCCGCTCGACACAGCGGATTTCCCAGCCACCTCGATCGAACCCGGTGACGAAGACACCGTGCCGGGTGATACAGAGCGTCGACAGGGCTCGCGGATCTCCGAGCAGGGCGCCTGCCTACGATGAGCCACGGCAGCCGAGCCCCGGCAGGGCGCGTGCACGATGCGGGCTCGGCGAGGCACGCAGACTGGAGGTGGTCGGTGGTGCCGCTCCCGTTCGCCACTCCGCAGTTTCAGCAGACCCCCGGCGCGCCATGTCAGACTGCGGGGTCTCTGCACAACAGCTACGAAAACACCCACTCGCAGGCCCGTCTACCTGCGGCTTTACTCTCGG # Right flank : ACCGCAGGGCCGTCGGCACCGGAGGGAGCGCGTCGATCAACTCGATGCTCGGTCTTCATCGACTCTGTGAAAAGATCCACCGCGGCAAGCAGCCTCTACTTCGCTGATTCATCGTGTCCTTATCGCTTGACGCGGGAGCCTGATTCGCCGGAACCAGGGCGTCCACGAGAGCTGCGGCCCGCGGAACCCTTGACCGCCCAGCGTGGTCATGTCACGAAGGCGCACAGGATCGAGAACGGATGCCACGGGCGCGGGTTGCCGGAATTAGAGTGGCGGAGTTCTGCCGATTCGATCACGCCGCATCGGGCGTGCATCTCCTGAACGGACGGTTGTGGTGACAGGTTCAACAGTGTCGGGTCCGCCCCGGCTGGACGTGGTCGGCTCCGGTGGCACCACGGCGCGCTCATCCGCCGGGTGGGCGCTCGTCACCGACGGCACGGCGGCGGTGGCCGTGGGCGCGACGGTGGCGGGCGGGTTCGGAGTGGAGGCGGCGAAGTCGT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAGGAGGGGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 124793-124499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000005.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 124792 30 100.0 36 .............................. CTGGCAGCAATGCCCGCCCGTCCGGCCGGACATGCG 124726 30 100.0 36 .............................. TGCGGTCGCAGCCCGAGCGCACCGCACACCGTGGCC 124660 30 100.0 36 .............................. GCGTAGAGCACTGCGGGTTCCTCGCTGAGGTAGGCG 124594 30 100.0 36 .............................. TCCCGCTCGATGTTCTCCCGCAGCAGCTCGGCCGGG 124528 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 GTCCTCATCGCCCCTAGGAGGGGTTACAAC # Left flank : GTGATCGGCACGGACTCTGCCGACCGGAGGCGGGCGTTCAATGGTGCCGAGAGATCACGAGTGCCTCACGAGGCGAGTGCGTGTCGGGGCGGGCCGTCGCCTGCCAGAGGGCACTTCGCCTGACCGGGGACGACCGCGCGACCCGCCGATACCGGGCTGGGACATGGCCGGCCCGTCGCTGGTCTGGTCGGCGGAGATCGCCGCTCGGAATGTGTGCGATGTCGTGCTGCGCACCGCAGACGCGGAAGTGAGCGGGGCGGCGAAGCGGTGTGCGGGGTCGGGGATCCTGGTGCCGATACGATCGTGTCCGACCATCCGTGACGGGTGTGGCCAGGGTCCGACAGCGCGGGACGGTGTTGCGAGGTGATCACGTGGGGCACTCGCCCTGGCACCGAATTTTCAGCGGACCCCCGGGGTTGGACGTCAGACCGCCGGTCCGCTGCACAATCCGGCTCAGAAGCACGCTTGCCATACCCGTTGACCTGCGGCTTTACTCTCGG # Right flank : ACAGGCACTAGCCCGAGCCGCTTGCGCGGCGCCCCGCGTGTCCTCATCGCCCCTAAGGGTTCCCACCGGGACGCGGAGCACTACGAGAGCACCCGCCGTGACCGTCCGCCGCGTTCTCACGAATGGCTCCACCCGTCGACGTCTAGGCCCGTGACAACGGTCCGAAGCACCCCTCACGGCCCTGCGCCGTACCCCCGTCACACCGGACGACGCAGCCTCGCGGCGAGGGCTCGTCGTAGCCGAGGCGAGCTACCGGATACGGAGTCGACCGCCTCGCCGTCCCGGCTTCCCGGTCTCTCAGGCCTGCCTCGGGGCGGGGTTCAGCGTCGGATCCAGCCGAAGCCTGCGGCGTTGCCGCGTCCGAGGCCCCACGACCACAGGGCGCGTAGTGCGGTGGGCGCGCCGTGGAGACGGACGTTCGCGGTGGCTCCGGTCTGTCGGCCGTCGCCGACGGTGAAGGCCCGTTTCGGTCCGGTGGGGGTGATCTCGTCGATGGTGAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAGGAGGGGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 4 164019-164906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000005.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 164019 29 80.0 36 ..AT..-G...........G......C... GCGGGGAGAGGGACAGCGTTGGAATCCTGGCCGCCC 164084 30 93.3 35 ........G.................A... CGCAGCCGCTGCTGTAGGAGTTCGGCGGTCTCCAC 164149 30 93.3 37 .........T...............C.... CCGATCGCCTCGGCGGCGGCCTCCGACCACCGGCCTC 164216 30 96.7 35 A............................. TCCCGTTCGACGCGCCACCACAGGACCGCGGCGAT 164281 30 96.7 35 ...................G.......... CCGGTCCTGGGCCAAGGCCTCGGCCAGATCAACGC 164346 30 96.7 38 .........................C.... CCACGGGACGCCCTCGCGGCGTTCGACCGCGCGCACCC 164414 30 100.0 36 .............................. GGGACCTTCCTGGGCCGGTTCAGGCTGCCGTTCTCG 164480 30 100.0 36 .............................. TTCGCGGGTGTCCAGGCCCGACGTGCCGACCCTCGA 164546 30 100.0 37 .............................. CGGGGGTCACCTGCCCCGGCTCGGTCTCGTCGATCAT 164613 30 100.0 36 .............................. CGGGAGCGCGCGGGCATGCCTGCCCCGAGTGCGCGT 164679 30 100.0 37 .............................. CCGGACGGACGGGACGGGCCGGTCGGCTGGGCCGGGA 164746 30 100.0 36 .............................. CCGACGCGGCGACGGTGACGGTGACGGCCCTCGGGC 164812 30 100.0 35 .............................. ACCTACACCGCCCTGTCCATCGCGACCGCCCTCGC 164877 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 96.9 36 GTTGCGAACCCTCGTAGGGACTATGAGGAC # Left flank : CCCGTGACACAGGACCTCACGGCCCTGATCCGACAGGCCTACGGCGGCGACCTCACCCGACCCGTCTCCTTCTTCATCGACACCCAACTCAAGCAACGCCCCTACGATCCCGTGATCAACGACCTGGGCGAACTCGGTCTGCAACTTCACGAGTTCACCGACCCCAACTTCTACGTCGCCTTCGGATACAAGATCACCGACGACACCCCCGTCACCTCCAGCTGGGTGCTGGAGTTGTCGATGGTCGGACGCTTCGGCGTCCTGGCCCGGACCGCCCACAACGAGTGGCATCGGCTCCTCTATCCCGCCGAGCCCGACCTACACCCCATCGAAGCCGCCATGCTCGACATCCTCACCACACACCAGATCACCCTGCCCACCCGTCAGGAACTCGAACAACCTCTGGAGATGACCCTCGACTTCACCGACCCCGAAAACGTCCGTGTCTACCACGCCCTCTTCTCCGACGAGGATCTCCTCCCCTGGCAATTCTCACCGTT # Right flank : CCCGAGAGTAAAGTCGCAGGTCAGCACCTCTGTCACCGACGCTTTGGAGGCTGATTCTTCAGATATCCTCCGGTTTGACGTGGAGGCCCGGGGGTTCGCTGAAGATGAGTGGGTCTCGGTGATGATGGTCATCGGCTAGTGAACAGCCCCCTCTCCGTCAGTGGGGACCTCTTCACGACGCGCATAACGGCATCCCTTGCTCGTCCGGACTGCTCTGCTGGCCGTCGAGCCAGACCTGGGCGTACTCGCCCGCGCCGAGTCACGACCACCGGCTCGGTCCTCGTGACGTCCAGCACAACCCACTCGGGTCAGTTGCTCTTCAGGACGGATGTTACGGCTTGGACCCGAGCGCCTCAATCGTGCTGAAGTGAGCCGCCCCGGCACACGAGACGAACCTGATCAGTTCACCCCGCGTTCTGCATGTCTGTCGGCCGCGAAGCGGTGTACACCGCCACCCAACGGCGGTCAGTACTACCCATCGTCGAAGTCGCGCTGCTGAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGTAGGGACTATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 5 174397-175413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000005.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 174397 30 100.0 36 .............................. AGGTAGAGGCCGTCGATCGCGCCGGCCAGGCGACCG 174463 30 100.0 37 .............................. AGAGCCGGTCAGCCGGAGAAGCGGGCGCGGTACTCAT 174530 30 100.0 34 .............................. CCGCCACCCGGACCAGTCAGGCCGAGGAGCAGGG 174594 30 100.0 37 .............................. GGGCAAGCCGCACCTCGGCGCGCAGCCTCGCTGTGGT 174661 30 100.0 36 .............................. CTCCGGCCTGGATGGCCTGCCCGCTGGAATCGCCCT 174727 30 100.0 34 .............................. GTGGAGCGTTGGCGGGCGCGTCAGGAGCGCCGCG 174791 30 100.0 37 .............................. CCCTGGCGGACGGCGTGGCGGTGCGGTAGCCGCACGC 174858 30 100.0 37 .............................. CCGGGTTCTCGGTCCAGTCCCTGGCGACCGTGCAGGG 174925 30 100.0 36 .............................. ACCCGCCCGGCCTGGGGGCAGCGGTGCGGGGAGATC 174991 30 100.0 36 .............................. ATGACGACCCGTGCGCCGCGTGACATCCGCGCCGAC 175057 30 100.0 35 .............................. CAGAGCTGAGTGGTTCAGAGGCGGCACGGACCCAG 175122 30 100.0 37 .............................. AAGCCATCCCGCAGGCGCGGGCGCGGGTGTCCGAGAG 175189 30 100.0 31 .............................. TCCATGAGATGACCGAGGCGCCTCAGCGGTC 175250 30 100.0 37 .............................. ACGCTCCCGAGCGTGATCCCCGCGCGCGGGTGGTCAG 175317 30 96.7 35 ...............G.............. CGAGGGTGATGCCATCCAGTCCGCTGATCGACCCG 175382 29 90.0 0 ..-...................GC...... | A,A,G [175403,175409,175412] ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.2 36 GTCTTCATCTGCCCTAGGAGGGTTCGCAAC # Left flank : GTCAAACACCGAACCCTCGGCCGCAACGTCTCCTACGACGAACTCATCTACCTCGACGCCCTCGCACTCACCCGCACCTGCCTCGAAGGCAGCACCTACACGCCGTTCCGCGTCTGGTGGTGACCATGTACACCATCCTGGTCTACGACACCGCCACCGAACGCAACGCCGCAGTCCTCCGCACCTGCCGAAAATACCTGCGACACCAACAACGCAGCGTCTTCGAGGGAGAACTCAGCCCAGCCCAGATGCTCCGACTCCGCACCGAACTCGAACAACGCATCGACCGCGCCTACGACCACATCCTCGTCTACACGTTCCCACCCGGAACCGACCCCAGACGCCAATCCTGGGGCGGCCCCGACGACCAACCACACGACATCCTCTGACCCCCGCATTTCAGCGGAACCCCCGGGCCGGACGTCAAACCTCCGGTCCTCTGCGAAAACACCACAAAAACCCCGACTGGGAACGCCGGTGACCTGCGGCTTTACTCTCGG # Right flank : CAACCGAAGTTCACGGTGTTCGAGTCGCCACGCGACGACTTCGAGGGTCGCCAACCGTGTGCCCCGCAGGTGCAGCGCCCCGGTCGAAAGATCGCGGAGAGCGTAACCATCGTGACAAGCACAACGCGCAGGCATACGTCCACATGGCAGCAGTGATCACACGTGGGTAGCGGCACCTGCGATGCGCACCGTATGGCCCAGGGGAAGGCAGCACAGAGAAACTCCGCCCGTGAACACCGTGCAGGCGGCACAGGGCCGAAGGCCCACAGAAATCGTCAGACCAAATCCACTACCGACAACGACCAATCACTCACTCCCTATGTTCGGACACATGATGGCGTAGTGATCGATCCCGACGGCAGAAAGGCACCGCATCCGGTCGAACGAGCATGCCCCCTGCGCAGCCCTGGTGGCCGTCGACCAGAACCTTCGTCTCTGCGTCGAGGGCGTCTCGTCCGCAAGCTCAGGCTCGGACGGTCGTCCAGTGTCGGCTGATGCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCATCTGCCCTAGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 214376-216172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000005.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 214376 28 100.0 33 ............................ GCGCGGCGGCCCGGCCTGGGCGGCGGCGCCGGG 214437 28 100.0 33 ............................ GACTCCCGCGCTTCGTGCGGACCTGGTCCTCGG 214498 28 100.0 33 ............................ GGCCGACCCGCTGCACCGACGGCACCCGGTGAC 214559 28 100.0 33 ............................ GCGGCCTCATTGACCGCCACCAGGTCTACCGAT 214620 28 100.0 33 ............................ GGAACTTCTCCACGAGGAGGAGTACGACTACCG 214681 28 100.0 33 ............................ GATCCCGGGGCTGCGGCCCCCTCGACACCGGCG 214742 28 100.0 33 ............................ GTCCTACGGCGCGCTGCTGCGGTGGCGGGTCGA 214803 28 100.0 33 ............................ GCTCGGCGACCCGGTCGAGCACACCGGTGTAGG 214864 28 100.0 34 ............................ GTCTGTGCGTGCGTCATGCTGCTCCTTCGCTCGT 214926 28 100.0 33 ............................ GCTGGCACAGGGCGACGTGGTCGTAGGCGCCGT 214987 28 100.0 33 ............................ GGCGCTCCCCGGCACTGCGGAACCCCGGCACCC 215048 28 100.0 33 ............................ GCGACGCGCGCGACGTAGGGAGTGGACATCGAG 215109 28 100.0 33 ............................ GTCCGTCCGCCCGGTCGAGGGTGTCGATGTCGA 215170 28 100.0 33 ............................ GCTGTTCGCACTCTTCGTCCCATGCCTTCCGCG 215231 28 100.0 33 ............................ GCACCGGAACGTGTCGCCCGCGACAGTCCGGAA 215292 28 100.0 33 ............................ GCGGCACCCGTTGGATCGGTTGGTGATCGATGC 215353 28 100.0 33 ............................ GCGACCTGGACGGCATCGGGGTCGGCGGCGCGG 215414 28 100.0 33 ............................ GGCGTCATGGACGGTGCCGATCCAGCCGCCCGA 215475 28 100.0 33 ............................ AGAACAGCGGCTCGCTGAGCACGATCAACCCCG 215536 28 100.0 33 ............................ GACCCCCGCAGGCTGCGGGCGAGGTTCTGGCGC 215597 28 100.0 33 ............................ GCCCTCAGCAGCTTGGTCACCGCAGGCCGCTGC 215658 28 100.0 33 ............................ GGTGGCCCGGATGCGGGGGCCGAACGGGCCGCG 215719 28 100.0 33 ............................ GTCCCTTGCCGCTGTTCTCAGCGTCGACGGCAT 215780 28 100.0 33 ............................ GCCACGCGCCAGTACGCCCGACGCGCTCCCGTG 215841 28 100.0 33 ............................ GCACTGCGAATCTGATAACGAGATGGTCACCCA 215902 28 100.0 33 ............................ GGCTGATCCGCCCATGGCCTGGCTGGAGATCCT 215963 28 100.0 32 ............................ GCCCAGCTTGACACATCCTCGGTGGGCTGTCT 216023 28 100.0 33 ............................ GATGGCGTGGTGGTCAGCAGGGGCGCGCAGCAG 216084 28 100.0 33 ............................ TTTCTTCCTGATGCTGTGGGCCTTGACCTATGC 216145 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 30 28 100.0 33 GTCCGCTCCGCGCAAGCGGAGGTGAGCC # Left flank : GGACGTTCCCCGCGTTAACCCTGACATCCAGCCCGCAGCCAAAGCAAAGTACAAACTGGCCGTGACCACCGAGAATGCTGGGGCAGCCTCCCGATACTCAATACCCTGCGCCCGAGCTTCGGTGTCCCGCCCACGCCTCAGTGAGCTGGACATCCGTCATCTCGGAGAGTGATTTTCACCGAATCGCCAGCGGCTATGGCAGCGATGTTGCCGAGACAAAAAAGCGACCAAGGGGCTACGGAGGCCATCAGCAGGCGAGCGCCGCGGACTGGTTCGGCGTCGAGGTGCTCGGAGAGCCTGCTGACCTGCAACACAACTGCGCCCGCCGTCACTGTCCACCCTCACCCCACGTTAAGGTCAAGCACACCCATCCGACGGTCGCGCCGCAACAAGAGATCACCTGAAGAGCGCCGTGACCTAACCACACACAACCCTCGGGATTCGCAAGAATGAAACATCACAAATTGGCAACGCAGTAGAAGAAGTGCAGGTCGGGAAGG # Right flank : CGGACGGGCGGGTCTACTCCCTCGACGCCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCAACAGTCCGCTCCGCGCAAGCGGAGGTGAGCCGGACGGGCGGGTCTACTCCCTCGACGCCCAACAGTCCGCTCCGCGCAAGCGGAGGTGAGCCGGACGGGCGGGTCTACTCCCTCGACGCCCAACAGTCCGCTCCGCGCAAGCGGAGGTGAGCCGGCCATCGTGACCGCGGTGACCGCCCTCGTCGGGTCCGCTCCGCGCAAGCGGAGGTGAGCCGCGTCATCTCGTTCTGATCTGACGGGGGGTTGGGTCCGCTCCGCGCAAGCGGAGGTGAGCCGTCCACCATGGACGACACGATCCGCACGTTGCCGTCCGCTCCGCGCAAGCGGAGGTGAGCCGGCCTACCAACTGCGAAAGCTCACCCACCGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAAGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 216306-217065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000005.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 216306 28 100.0 33 ............................ GGACGGGCGGGTCTACTCCCTCGACGCCCAACA 216367 28 100.0 33 ............................ GGACGGGCGGGTCTACTCCCTCGACGCCCAACA 216428 28 100.0 33 ............................ GGCCATCGTGACCGCGGTGACCGCCCTCGTCGG 216489 28 100.0 33 ............................ GCGTCATCTCGTTCTGATCTGACGGGGGGTTGG 216550 28 100.0 33 ............................ GTCCACCATGGACGACACGATCCGCACGTTGCC 216611 28 100.0 33 ............................ GGCCTACCAACTGCGAAAGCTCACCCACCGTGC 216672 28 100.0 33 ............................ GGGCACACCCCGTACCCGCGTCGTCTGACCGAC 216733 28 96.4 33 ............T............... GGTGGACCGCCCCCCACCGATCCGTCCGCCGTT 216794 28 96.4 33 ............T............... AGCGCTGCAATCCGGCCTCGCCGACGACGAACA 216855 28 100.0 33 ............................ GACGTGCACTCCGGCGGGCTGCGGTTGGAGGGC 216916 28 100.0 33 ............................ GCCGTGGCTGCTCTCGATGAGATCGCGCTGACC 216977 28 96.4 33 ......................C..... GGCCGATACCAGGAGTCGAGCAGTGTCACCCGA 217038 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 33 GTCCGCTCCGCGCAAGCGGAGGTGAGCC # Left flank : CCGCCACGCGCCAGTACGCCCGACGCGCTCCCGTGGTCCGCTCCGCGCAAGCGGAGGTGAGCCGCACTGCGAATCTGATAACGAGATGGTCACCCAGTCCGCTCCGCGCAAGCGGAGGTGAGCCGGCTGATCCGCCCATGGCCTGGCTGGAGATCCTGTCCGCTCCGCGCAAGCGGAGGTGAGCCGCCCAGCTTGACACATCCTCGGTGGGCTGTCTGTCCGCTCCGCGCAAGCGGAGGTGAGCCGATGGCGTGGTGGTCAGCAGGGGCGCGCAGCAGGTCCGCTCCGCGCAAGCGGAGGTGAGCCTTTCTTCCTGATGCTGTGGGCCTTGACCTATGCGTCCGCTCCGCGCAAGCGGAGGTGAGCCGGACGGGCGGGTCTACTCCCTCGACGCCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCAACA # Right flank : CGCAGAAGCAGACATGGTATCCAGCGGTCCGGTGTCCCTCGGCGTCCTCGCTGCGCTGGCACCCGTCCACGGTGCCGATCATGTGGTCCGGCAAGTATGAGGCTGACGACTACTCAATCGCCCGCTTGGAACGACGGCCACTGACTGCACCCCAGGAAGGCCCCGTGGCGCCATCTGCTTGGCAGTGCACGCAGGAGGGAGGATGCGGGGCAGGCCCGGGCGCCGAGGTTCCCCCGAAACCTACCGCGTGGCTGGGCAGGGCTTCAGCGCGAGGGCAGAACGCCACTCCCACACCCTTTCACTTCCGGGTTGATTTCGTGCTCGGAAAGTAAGAAAGGCGAATAGTTCCCCACGTTCGAGTGATTTAACCACCTCGAATGAGTTACATGGCCTCTTAAAGTTGCTCGGTGAGACCGCCAATCTCGAGAGCCACGCCGCGATCCTGATAACCTACGCCCGGACTCCACTCCTACCTGTTCGGTTCCTTCGACCTGGAGGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAAGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 230014-227855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000005.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230013 29 100.0 32 ............................. GCGGAACCGGGTGGTGTCGCCCTCGAGTTGAT 229952 29 100.0 32 ............................. CCGCACGGATACCGCGCCCGGTGGATACAGAA 229891 29 100.0 32 ............................. GTGAGACGTTCGCGCAGGCGGCGCTTCGCGAA 229830 29 100.0 32 ............................. CCATGGTCGAACTCGGGCTCCTGACACCCTTG 229769 29 100.0 32 ............................. GTGGCACCGGCCACCACCGCGGCCACCAGCTC 229708 29 100.0 32 ............................. GTCGCCTTCGCGGCGGCGTTGCGGCGTGAGGG 229647 29 100.0 32 ............................. TTGCGCCGCACGATCATCGCCACCACCGTCGA 229586 29 100.0 32 ............................. CACCAGCACGCTGTTCGTGTTCGTCGACCCCG 229525 29 100.0 32 ............................. GGTCACGGACATGGGGTCTCCTTCGCGGGAGG 229464 29 100.0 32 ............................. GCCGGGGGTTGGATTTTGCGGCCGCGCTCGGC 229403 29 100.0 32 ............................. ATGGCCTCCGCAGGCCGGGGAGCTGGCGCTGC 229342 29 100.0 32 ............................. TGCGTGATGCGGTCCCACACCCACCCCTCGAT 229281 29 100.0 26 ............................. CGGCCAGCGCTCGGACTCCAGGGCAG 229226 29 100.0 32 ............................. ATCGATGCGGTCGTCGCCCTAGTCATGGCCCT 229165 29 100.0 32 ............................. ACGGCGGCCGCGGTGGGCGACCTCGCCGCCAC 229104 29 100.0 32 ............................. ACGCCCCGGATGCTGCTCGATGAGCTGGTGGG 229043 29 100.0 32 ............................. GCCGACGGGCTCCGCCCACCCGAGGCGCTCCG 228982 29 100.0 32 ............................. CTGCAGGTAGTCGATCACGACCAGGTCCAGGC 228921 29 100.0 32 ............................. ACGCGACATGCGGCCGAGCTGGAACGCATCCG 228860 29 100.0 33 ............................. GACCCGGAGGCCGCGGCGATCAGGTGGGCGCAG 228798 29 96.6 32 ............G................ GTTGACGTCACCACGGATGGTGCGGCGTGTGA 228737 29 100.0 32 ............................. ATCCAGGAGCCCACGAAGGACGTCTTCAAGAA 228676 29 100.0 32 ............................. ACCGGCGGGCATGATCATGGGTGGGCCGGGGT 228615 29 100.0 32 ............................. CCAACACGCGGACCGGGCCTTGACCGTGCGCC 228554 29 100.0 32 ............................. TTCGACGCCGGGATCGACGTCCAGAACCGGCT 228493 29 100.0 32 ............................. GTCCATCACGACGTCGGCACCGCCCTGGCGCG 228432 29 100.0 32 ............................. GAACGCGCTGCGGACGGAGGTGTGGTCGGGAT 228371 29 100.0 32 ............................. TCCGAGATCGGCCGGATCACCGGGTTCCTGGA 228310 29 100.0 32 ............................. CCGGCGGGCTTCGCCGTCCCACCAGCCGGGCG 228249 29 96.6 32 ............................C GCCTCGACGAGGCGACCCGCCGAGGGAAGGCC 228188 29 100.0 32 ............................. CCGCGTGATCGCCAGGTTGCGCGACACCCCTT 228127 29 100.0 32 ............................. TGAGCCGTCCAACTCCGGACAGGGCGGGCAGG 228066 29 100.0 32 ............................. ATGCTGCGAACCCTCGAACGGGCCGGCTGGCT 228005 29 100.0 32 ............................. AACGTCGCGGGCATGAAGGACGCCATCCGCAC 227944 29 93.1 32 ........T....G............... TGAGTTCTGCGGTCCGCCTGGCGTAGAGGTGT 227883 29 69.0 0 ..C......A.A.G...TC..A..G..T. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGCGCTCCGCGCAAGCGGAGGTGAGCCG # Left flank : CCAGAACACATACCGAGAGCAGAATCACACCATGATCGGTTGCTCCCAGAATGCTCCCACCAACGCAGAGAACCCCGCCGGTGATGATCACCGACGGGGCATCTGACCAGTGTGTATAACTGGTGGGCGATACAGGGATTGAACCTGTGACCTCTACCGTGTCAAGGTAAGCGGCCGTGCCCGCTGACCTGCGGAAACAGAGAAACCGTAGGTCAGTGGGCGCCGTTCGACACGGTTCAGCGCAGTTGGGTGTGGCTGTGAGGGCACTGCGGCTCCCAGCCTGCTCCCAGATGACCGCTCCCACAGGTACCGGTTCCGCTCCTGTCTGCGTCGACTCCCACCTGGTTAAGGTGGAGTCTGGTGGGCGTTCGCGCTGTCACTTTGGCGATCAATCGGAGAGTGTCTTGATCTGTCTGCAGTACGATCTGCGACTTCCCGAAACCGCACTGACAGGACATTACGAATTGGTCACGTGGTAGAAGAGGTGCAGGTCGGCAAGG # Right flank : ACTCCTCATCGGCTCGTCTGCGTACCTCGACGTGTTCCGCCACGTGAGCGCTGACCTGATCCTGACGCTGTGGGGGTGGGAGTCCGCACCGATTGAGCGGCGTAACGGATCTGCGTCTCGCCTCGCGTGAGCTGGATGGAGGCAAGCTAGAAAACAGCGCGTGGACGTTGTAAGGCGATGACCTGGGAGAACTCGCAGTTGTATCGACAGTGGCCTATCTGAGCGACGATCCTGTCGGGGGCCGCTGATCTACTACGTAGCGTGTCGTTTGATGACTCTGTGCATGCTGATGTGAGTGGTTGCCAGCTGGACGCCCGGTTGTGGGGTAAGGAGAAGGGCCTGTCCAGGCCCTACCCGGTCGTGTGTCACCTTCTCGACACGGCGGTGATGGCGGGAGCGCTGTGGGATGCCGTGTTGTCGAGGGCTTTCCGTCGGCGGTTGGCGGATCGTGCGGGTGTGTCGGTTGCCGTCATGAGGCGGCTGGTCTCTTTCTGGGCAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTCCGCGCAAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 471920-471403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000005.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 471919 29 100.0 32 ............................. CCCGGTGTCGCGCCCGCCGCGCGCCGGCGGCA 471858 29 96.6 32 ............................T GCACCACGACACTGACAGCAATCGGGGCACTC 471797 29 96.6 32 ............................C GCCGTGATGTCGGTGATCTCGTTGACGCTGAG 471736 29 100.0 32 ............................. CTACGACCGGCTGGGGGAGATCGGCAGGTTGC 471675 29 100.0 32 ............................. GCGGGCGGCGATGGCGTCGGCGGTTGGCGGGT 471614 29 100.0 32 ............................. GCCTGGTGGTCGTCGGTTTGGCGCTCCCCCGC 471553 29 93.1 32 ...........A................C CACCTCATGGAGACGATCCTCGACAACCAGAT 471492 29 93.1 32 ....C.......................C CCGGACGTGGACATCCACGAGCCGCCGCTTCC 471431 29 89.7 0 ...CG.........A.............. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTATTCCCCGCGCAGGCGGGGGTGAGCCG # Left flank : AGCGGGCGGGCGTCTCGGTGCTGGTCTGCGACCCCGAGGGGCCGACCGTGGCGACGGTCCAGGACGCGCTGGACCTGGTGGGCGCGGTGTTCCTCGGCGCCAGGGCGGTGGCCGTCCCCGCCGGCAGGCTCGACGAGGCCTTCTACACGCTGAGCACCGGCTTCGCGGGCGAGGTCATGCAGAAGTTCGTCAACTACGACCTGCGGCTCGCCGTCATCGGCGACATCTCCGCGCACCTGGCGGCCAGTTCGGCGCTGCGCTCCCTGGTGCACGAGTCGAACCGCGGGGGTCACGTGTGGTTCCTGCCCGACCTCGACGCCCTGGACGCGCGGCTGGCAGCCCTCGCCTGAGCCTGGCACCCCCGACCGGCCTCAAGCCGCCGACCGGACGGCGCGGGTCGACTTCGGACGGTGGGATACGGTGACCCCGTGTTCCAGGTCTCCGGCCCGACGGCTAGTCACAAAACGATAACGCGCCACTGAAAGCCCAGTTGGCGAAGG # Right flank : CCCGCCACCAGCCTGGTGGGAACGCGGTGGCGCGGCCGGCGGGCAGGCTTCTCGACCGACCGGGCGACACCCGACGGTTCCGCTTCGCCACTCGGCCGGGCGCGCGATGGTCGCGGGCGACGGGCGGCCCGCGCCCGGCCGTGTCAGGCTGCCAGCAGTGCGCGTCGACCCCGCCAGGCGTGCGGCCGGAGGAAGGGGGAGGGCCGGTGTCCGGTCGTCGGGACCATCCGCCCGCCATCGACCGTGCCGACGCCGACCTGGCCCTGATGGGCCGCTGGCTCGTCGACGGACCGGAGAAGCAGGCCCGCGCGGCGGACGCGCTGCTGGCCGAGCGGTCCGGGTGGGGGTGGCTGGAGGGGCTGATCTCGATCAGCTGCTTCGCGGGCCTGGACGGCCGGGGGATGCTCACCTACTCGCAATGGGTGGACGAGGCGTCGTTGCGGCACTTCATCGCCGTGGAGCGCCCGTCGATGCTGCGCTTCGTCGACCGGATCGTGCAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAGGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 510853-510152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJM010000005.1 Actinoalloteichus hoggarensis strain CECT 8639 Ga0436952_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 510852 28 100.0 33 ............................ CTCGTACACGGTGAGCTCGCTGGAGCTGTAGAC 510791 28 100.0 33 ............................ GCCGCGGCAGGAGGCATCCGCATGATCACCGTG 510730 28 100.0 33 ............................ GTCCTGACGTGCCTCCAGGCCGACGCGGTTCTT 510669 28 100.0 33 ............................ CGAAAGTGAGCGACATGGACCTCCCGGAGGGCT 510608 28 100.0 33 ............................ GATCGCGGCGAGAATCCACATCCACCGGGGCAG 510547 28 100.0 33 ............................ CAGCGCACAGCCGACGGGAGACCCCGCTGCGGC 510486 28 96.4 33 ..................T......... GTTCTTCTTCGCGATCTCGCGCCGGGCGTGATC 510425 28 89.3 33 ..............GA..A......... GTGCTTACGCGATTCGCGGCGGGTCTGAAAACG 510364 28 82.1 93 ......T......G..T.......GA.. GGGCATGTGCCGATGGCGCTGCGGGCCGACGTGTCCGCCCGGTGTGAGCCCGAGCGCACCGGTCGGCAGCTCGATCGGCGCGCGGCGCAGATC 510243 27 78.6 36 ..........T..G.C...A.-...T.. GCCGGCCTTCGACCACCAGACGATCCTGCTCGGCGA 510180 28 78.6 0 .....T.....C.GC...........GG | C [510160] ========== ====== ====== ====== ============================ ============================================================================================= ================== 11 28 93.2 39 GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : CGACCTCCGTGACGTCGGGAAGCAGTTCGGCCAGACGCTGCGGCCTGGCCCACCAGCGGTAGGCGGTTGCTGCGGACACGGGAACGTCCGTCGACCTGTCGATGACGGCCACCTGCTGCTCCTCTGTCGGCGGGGCCCGGCACGGGATGCGGTCGGCGTCTCGACGACACGCACGTCCTGCCTGGGCGTGATGGTGGTCCTGTAAGAGCGTGTCTGCGACACCGCTCCCTGGTGGTGATACCCGAGATCGCCTCACACTGCACCTGTGTCCACCCGAGGAGGGTGCGCCGAAGCGGGTCCCGACGCGGACGATCTCGGGCCGACGACGTCGGGTCGGCGGCGCCCGTCGGCCTGCGCCGGCCCGATCGACCCGGCGTCGCGTCGAACGTCGTCGGACCGGCGTCTCACGCTCCGGTACGGTGATCGCAGGTGCGCATTCCGCGCCCACGCCGTCAGATCACAGGACGATCACGTGCCAGTGAAGGCCCAGTTCACGAAGC # Right flank : AGCCGGACGAGGGTTCTCGGCCTGTCGGCCCGGTCTTCGCCGCGGTCGCCTCGGCTCGTCGCCCTGCTCGCCTGCCTCCCGCCCCGGCCCGCCGGACGTCTCGCCCCGCCGGGCCCCTGTCTCGTCCGGCCCCGCCCGCCGCCGCCCGTTCCCTGGTCGGGTTCCCGGCGAGGTGTACCGCGCCCGCGCGGGGGTATTCGGGGAGCTCGACAGCAGGAGGCGCGATGCTCGACGGGTTGTCCGGCTCACTGATCACGACGACAAGACCGGTGCTGCTCGAACAGGCGGCGCGGGAACATCTGAGAGTCCACAGCCCGGTCGACGGAGCGCTGGTCGGTCTGCTCCCGGTGGCCGACGAGCACGAGATCACGCAGGCCCTGCGTACCGCCAGGTCGGCGCTGTCGGGCTGGTCGCGAACCTCGGCCGCCGAGCGGGGACGCCGCCTGCGCATCGCCGCCTCGGCGGTGCGTGCCTCCGTCGACGAGCTGGCCGCGCTGCAC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //