Array 1 15434-16071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQON010000033.1 Klebsiella pneumoniae strain KpP1 33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15434 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 15495 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 15556 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 15617 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 15678 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 15739 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 15800 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 15861 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 15922 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 15983 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 16044 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 94.7 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97067-93745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQON010000003.1 Klebsiella pneumoniae strain KpP1 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97066 29 100.0 33 ............................. GCCCGCGCGAACCTGGGGCTGGGAGATTCAGCG 97004 29 100.0 33 ............................. TTGGCGGTCGACGGTGGCGAACTGCCTGATCAG 96942 29 100.0 32 ............................. GGGGGGAAATCAAGGTCAAAGTTGAGCTGGAT 96881 29 100.0 32 ............................. CCTCGATCATTCTTGCCAGTTGGGAGTCGGAC 96820 29 100.0 32 ............................. CACCTCGCCTATAAATCGTACCAGCCTGACAG 96759 29 100.0 32 ............................. TCGTAGCTAATAAATTCGTTGCTCATTTGAAA 96698 29 100.0 32 ............................. GCATCGCTCGCCTCGTTCGGTGCTAACGCTGG 96637 29 100.0 32 ............................. CGGCTGCGCTGTTGCACATAGCCGCTCAACCT 96576 29 100.0 32 ............................. CGGCCGCGTTCTCCCCTGTGGGAGGGGTGGGG 96515 29 100.0 32 ............................. GAATTTATTGGGAGGTGATAGCTCTGGCAGGT 96454 29 100.0 32 ............................. GGTATGCAGGGCACACGCCAAAATAATTTTGC 96393 29 100.0 32 ............................. ATACGCAGTCATTAATCGCGGGTGTTACGCAA 96332 29 100.0 32 ............................. CCTGCTGTCATTTCCTTCGGCACTACCGGCGC 96271 29 100.0 32 ............................. TTACACAAGAGAAGCACTGACAACCATTCACA 96210 29 100.0 32 ............................. CCTAAATTGCCAATTTTCCTTGAGCGCTGGTA 96149 29 100.0 32 ............................. GTAACAGGTCAACTCTTTATCGCTAACGGCTC 96088 29 100.0 32 ............................. CTTTTCATTTTCTCATGACCGCCACCATTTCG 96027 29 100.0 32 ............................. AATACCGGCGGCAGGGATTTACGCCCGAGCAG 95966 29 100.0 32 ............................. CGCACGGTGCATTCACGCCCGCGCGCCTGTTT 95905 29 100.0 32 ............................. CATCGCTTTCCATCGCAGCTTTTTCCAGGCGC 95844 29 100.0 32 ............................. GTGACGCGCTGCAGTTTGCCAAAACCCTGCCA 95783 29 100.0 32 ............................. ATTTTGCGTACGCTCTCCCACAGCTGATCGTG 95722 29 100.0 32 ............................. TTTCCGGCAGCGTAGCCAACCCGGCCAACCGT 95661 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 95600 29 96.6 32 A............................ GGTTTATAGAGGCTGAGGTATTCACAATGCGC 95539 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 95478 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 95417 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 95356 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 95295 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 95234 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 95173 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 95112 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 95051 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 94990 29 100.0 32 ............................. GGCCCAGTAATCCCCGCGAAGTCCTGAAGACG 94929 29 100.0 32 ............................. GTTGCGAAGCCTACGTCCAGATCGTAGAGATA 94868 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94807 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94746 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 94685 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 94624 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 94563 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 94502 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 94441 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 94380 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 94319 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 94258 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 94197 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 94136 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 94075 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 94014 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 93953 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 93892 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 93831 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 93773 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 55 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGTG # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //