Array 1 197187-195899 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZR01000003.1 Alcaligenes faecalis strain GZAF5 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 197186 28 100.0 32 ............................ CGGTAGAAGCGCCACCACCGCCAGCGAAAAGA 197126 28 100.0 32 ............................ GAAAAACGCCAGCCTGTAGGCGCACAGGCCCA 197066 28 100.0 32 ............................ TACAGGCGGGGCCATCTGATAGCAGTCCTTCG 197006 28 100.0 32 ............................ ACACACGCGATATCAAGCTCATGGCACAGGGA 196946 28 100.0 32 ............................ TTCCTGCTCGCGCACACCAAACAGATTGATGC 196886 28 100.0 32 ............................ TGCCTCCTTAAATACGCCCCCACGAACGTCTC 196826 28 100.0 32 ............................ TTGGGCACAACTGGGCCAGCCGTGCACAAACT 196766 28 100.0 32 ............................ GCAGCGTCGGGAGATGATGCAAGCCTGGGCGG 196706 28 100.0 32 ............................ CAAGTCTGTGGCCGAGCTGGACAACAACAAAT 196646 28 100.0 32 ............................ TCGCCAATCACGGCCAGGAGCGCAACAGTTAA 196586 28 100.0 32 ............................ ACCACCGTGCGGGCGGGGATTTCTGTTAATCC 196526 28 100.0 32 ............................ AATATGCATCCATCTTGAACATGGAGGATAAA 196466 28 100.0 32 ............................ GAGCACTATGTCAGTGATGTGTTCGAGATCAA 196406 28 100.0 32 ............................ ATAGGGACGAAAGAGTTCTCCATCGTGCCGCC 196346 28 100.0 32 ............................ CAAGCAAGCTATTGTCCTTTTGGGCCAACGCC 196286 28 100.0 32 ............................ AATGACCCGAACCCTTCCTTGAACGGCGATTA 196226 28 100.0 32 ............................ TTCACAAGGCGGCACCCAGCCCAGGCTGAGAG 196166 28 96.4 32 .............A.............. CGCGAACCAGTTGACTATATAGAGTCGATGAA 196106 28 96.4 32 ...........C................ CGAAGAAGTTCGGTGCTCGTATCTGGCTGGAG 196046 28 96.4 32 ..........T................. TGAAATTTATCGCCCCCGCAGCGGGCTACTAA 195986 28 89.3 32 .................TG.......G. GTGGCTAACACAACAGCGAAGGACTGCTATCA 195926 28 92.9 0 ...........C.............C.. | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.7 32 GTTTGCTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAGAGTTGCAGGGGCTGGAGCAAACGCAGTGGTTACGTGGTATGCGTGATCATATAGAGCTCAAGGAAGTGTGCCCTGTGCCGGAAGGAGTGAAATACCGAACCGTTTATCGTCGTCAATTTAAAACGAATGTTGATCGTTTGCGACGTAGGCGCATGAAGCGGCATGGTGAAACAGCGGAGCAAGCTGCCGCAGCGATTCCAGATCGTGTTCAACAACAGCCAGACTTGCCTTTTATACAGTTGCGTAGCCAAAGCACTGCACAAGCATTTTGCCTTTTCCTGGAAATGGGGCCGGAGCATGGAGTTCCTGCGGCCGGGGGGTTTAATGCTTATGGGCTAAGTGCAGAGGCGAGCGTCCCATGGTTTTGACCCTAATTTTTGGTGAATTTAATTATCTTTAAGAATCAATGGCTTGGGGTTTTGTCTAAAAAAAGGGTTTTGGAGGTGGGAAAGCAGGAAAGCGCTGAAGATTCAGCGCTTTCAGCGTTTTGACTCTA # Right flank : TGTTTTCACAGCGCGAAGCATCTGCGCGTGATATTTGCCTTTTTCCGAAAATTGATAATAGAATTCATTCTCATTTGAAGTGCCTGCTTCGACCCCTCCACCCCTACTTCCAGCCCATCGCTATAACTTTTACAAAATAAATGTCCGGAAAGTGGGCTCTCAAACGTCTTTATAAGGAAGGCCTGAAAAAGAACCTCTTGCCCTGTCCGCTTGATTGCGTTGGATGGGTAAGCAAGCCTCTGCCTTCTTGACCACTATTACTTTTTTGATCACCTGCCAGGCATGATGCGGCGGGTGCAGATCTACGGTTTTAACGGAATTATTTATGAAGTCCAAAGCAGTGAAGCGCCGCTGGGCGTTGGCCCTGGTGGCGGTGCTGGTACTGGGGGCGCTGGCCGCACAGGCCGGGCGTTCTTCAGAGCAGTTTGAAACGGTGGTTGTGGAACAAAGCGATATACGCGCTACCGTTGCTGCGGTGGGGACTTTGAAGCCCAGTCGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 216550-215745 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZR01000003.1 Alcaligenes faecalis strain GZAF5 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 216549 28 100.0 33 ............................ TGCCCCACCTTCAAACGAAGCGTGGGGCTTTTT 216488 28 100.0 32 ............................ ACAAGAATACGGCTTATTTGGCCGGATTAATG 216428 28 100.0 33 ............................ AAGAAGGGAGGATTACCTCAGCATGCGTTTTTT 216367 28 100.0 32 ............................ TTAGAGAAGGCGAAAGTCCTGGCTGCTGTTCG 216307 28 100.0 32 ............................ ACAACTTGTTTGACGGACAGTTCCAGGCGGGA 216247 28 100.0 32 ............................ CGTACTCGAATAAACGTTACTTGCGCCTGAAC 216187 28 100.0 32 ............................ TGAGCCCACATACTCTGCGTTTACTGCACCAC 216127 28 100.0 32 ............................ AGTATGCAGCTCCAAAAGGGACAGCTGGTATA 216067 28 100.0 33 ............................ AGTCTGAGCATTGGGAGCCTGGGCAGGTTGTGA 216006 28 100.0 32 ............................ TGTCTGACCGAGTGAACCGTGAGCGGGTAAAT 215946 28 100.0 33 ............................ ATCTTGCCCACATATTCAAGCAGAACCTCCCGT 215885 28 100.0 32 ............................ ATGCTCGGACGTTGTGGGCGGTTGTCCACCCG 215825 28 82.1 26 ...........AA....TG.T....... CGCCGATCGTTCGAGGGGGGGTAAAT 215771 27 78.6 0 ....-......CT..A......CG.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.2 32 GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACACTTAAATCAGGATTACGCAGGGCGGCTTGTACATCGCTATGTCTATGAACCAGCCAAGCCCCTCCGCAGAAATCCGCATCCCACACCAAAGGCGGCCCCTGCCGAAGGCGGGCATAAGCTGCATAGGGAGACGCAAGATTGAATTCGCCAAACATGACACCGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCATTTGAGCCGGAAAGAGGCAGTCAGGAGATTGTGTCTATTAATTCTTTCTGGGTGTTTTGAGGGAATTAAAAGTTTGTTTGCGGTTTATGGGGGAGGTTGCTTGAACTGGTGTGACTATTTTTTACAATAAATTTGATTGGTGAGTTTGAGATGACTGCTTTCTCCTTGCAGAAACCCTTTTTTTATTGGTTTTGAAATCTTATTTAAAATCAGATGCTTATAAACTGGCCTGAAAAAAGGGTTTTGGTGGCAGAAAAAGCCATAAGATAGAATCTGCTTGGCATTCAGGGATAAACGCTCTA # Right flank : AGCTTGTGGGTCTCTATCATGCATATGCAAAGTGTGCTGCTCTATGCGCCGCTGAAAAGGTGTTTAATTTCAGTTGTTTAGCCAGTTTTGTAATTGGTTGTCGCCTGTTCAGTTGCTAGACCGTTGCTGGTAGCGGCACTGTCGAAAATGTAGTTTAGGACTACCTCCCCAGCCTGCATTAATTCCAACTAATCACCGAGCATCAGAAGCCGCTGGAAGTTCTTCACTACCCAGTTTTTCCGTTTTACGCTGCGGCAACTTCCCATTCAAAATGAAGTACGCTAGCAGACCGATTACCAGCCCCCAGAAAGCCCCGCCAATCCCGAACAGCGTGATATTGGCTGCCGAAGCCAGGAAGGTAATCAAGGCTGCTTCCCGCGACTTGATGTCTGCCATGGCCCCCGCCAGGCTGCCGCCAATGGTGCCCAGCAGCGCCAAGCCCGCCAGTGTGGTGATAAAGGTCGCGGGGAAGGCCATGAATACAGCGGCCAGCGTGACCC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //