Array 1 2193846-2192490 **** Predicted by CRISPRDetect 2.4 *** >NC_022112.1 Lacticaseibacillus paracasei subsp. paracasei 8700:2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2193845 36 100.0 30 .................................... GTCTAGCGATTGAAGTAAAAGTGAAAGAAA 2193779 36 100.0 30 .................................... CCATGATTAACCCTCAACCTTTGCTTCAGG 2193713 36 100.0 30 .................................... CGAGTCGGCACGGATTCAACATGCGGCACA 2193647 36 100.0 29 .................................... ATACAAAAAAATCATACAGCCTGCATCAC 2193582 36 97.2 30 ..........A......................... CACTTGATGCTCACGCCATCCCAAGCATTT 2193516 36 100.0 30 .................................... CTAAACGTTCGCGAACCTCATTCAAGCTAA 2193450 36 100.0 30 .................................... ATGGATGATGCATTTGATCGACAGTGGCCC 2193384 36 100.0 30 .................................... GTGTTAGACTTAGATGTGGATGTTGCCCCG 2193318 36 100.0 30 .................................... ATACCAAGGCGGTGGCATGGCGTATACTGA 2193252 36 100.0 30 .................................... AGAACTGGACGCCGAACGCTTGGACACGCC 2193186 36 100.0 30 .................................... CCCTTTCGCCGCCATCTTTGATCGCCCACG 2193120 36 100.0 30 .................................... AAGCCGATGATATAAAGAAAGACGCCCCTT 2193054 36 100.0 30 .................................... GAGGCTTACCCCGTCTTTACCAGTTGGTCC 2192988 36 97.2 30 ..............C..................... TTGTTCATAGCAGCGTTGGCACGGGTATTG 2192922 36 100.0 30 .................................... ATGAAAGCCAGCGAAGGCACATTTTTTACT 2192856 36 100.0 30 .................................... CGTGTTATTGTAATTAGTCGCCAAGTCTTG 2192790 36 100.0 30 .................................... GCTGTCAAGTATCTCATGTCCTTCTAGAAA 2192724 36 100.0 30 .................................... AACGTTGACCGCTCTGTCTCACGAAACTGG 2192658 36 100.0 30 .................................... ACGTTAAACGTACACCATGCCGCACAGTCC 2192592 36 100.0 30 .................................... GACGATCTCGCACATGCTCAGTGATATGCG 2192526 36 91.7 0 ..........................T..A....C. | T [2192494] ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.3 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGGATTTAATTCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGACTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAATGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCA # Right flank : CATAATTCCGAGAAAATGAATTGGCGGATTTTAGAGTCAATCTCATGCTAGAAATAACCAATTCCGCAACTTTAACGTCTTCGGTCTGGTTAGCGTTCGCAATATTGATGGCTCTAGCAACTCAGGTAATTGCCGGTGCGGTTTTCGTGGACCGCTAACATCTTTATTATGCCGTCAGCCATGCTTCAAAGTTAGGGATGTCTTTAACGTACCTGCTGGTGTTGACTATGACATCTGCTACTCAATTAATATTGCCGATTTGCTGACTACACAACTGCCTCTGTAGTGGGAATATAGGCAGTGACGCCTGTAACAATATGATTTAACATTCAAGTTTCTTCAAGGGAAAACATATGCGAGTGCTCATGTCCTTCAAAATGTTTGATGACTGCGAACATCATCGATTATTGTGAAACAGCAGGCATACCTGTCTAAACTTTTTTCGATCAGTGCTTAATTAACGAAGTTCTTCTGTGTCAGTCGCAACCTGAGTTGAGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //