Array 1 19368-20434 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000017.1 Nostoc linckia z15 scaffold17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 19368 36 100.0 37 .................................... GGCAATATCTTGCAACTGTTCTGGAGAAAAACTTTTC 19441 36 100.0 36 .................................... TAACGCATGGATCTTCCATTACCATTACAACTTCTT 19513 36 100.0 36 .................................... AATCTTTTGTCTCTCGATGGAGGGTGCTTGCAGATT 19585 36 100.0 40 .................................... TTGACACTAGAAGTTCCTCCTGCGCCGCCTTGACCATTAC 19661 36 100.0 37 .................................... GCTATAAAAACAGCATCGGAAGCGGGTATTCCAACTA 19734 36 100.0 34 .................................... TTTACAACAGAAAAAACACGGATTCTATGTAGAA 19804 36 100.0 38 .................................... AAGATTCTTTTTGCACGTTGTAAATGGCAGCAGGGATT 19878 36 100.0 39 .................................... TATTTGCAATACCCAGTCTTTTTTTGTTTTTGGCAAAAG 19953 36 100.0 41 .................................... TAAAGTTGATGGTTTTTGTCGTCCAGTGCTGTGACCTTCTC 20030 36 100.0 38 .................................... ACTTGTCCTTCCAACTTTGTGGAAAGACTTCTCGACTC 20104 36 100.0 37 .................................... CACCAAGCCAGTCAATCCTCAAAGTTCTTGAGGTTGC 20177 36 100.0 40 .................................... TCTTCCAACATGTTGTCGCCAATAATGGAAAAGCCGTTTT 20253 36 94.4 39 ..........C..C...................... CAAATCTCATTAGCCCAGTTCCCATTTTCGGAACGGGGT 20328 36 97.2 35 ..........C......................... AATTTCTTTGATTTTTGCTTTGAACTTCAAGTTTG 20399 35 88.9 0 ..........C..............C...-...T.. | T [20432] ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 98.7 38 CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Left flank : GGAGCAAAGGTTATGGCTGTATATTTGGTCACGCTTGCTTTTGTCACTGGTTGCAGTCTTGTTTAAATTACTGTAGAAATTTGAGTTTTTATTCAGTGGTTATACTTTGTAATAATTCTCGATTTGGGTAATTAGGAGTTATGTAAGGGTGGGTGAGTTCTTGTGACTTTTATATCTTGGCGGAAATTTTGAGGATGTAAAGGCCTTTTCGTGCGAATGACGAAATTTTTTTTAGAGATGATTTATTTCACGCAGAGGCGCAGCACTTCGGCTACGCTCAGTGACCGGCGCGGAGAGGATGAGGAGTTTGAGATGTTCATCGACACCAGTCGCCAAATCGCTACAATCCTATATTTTTCGTTGAGTGGTGTCGATTCCTTACTGGATAATGATTTGAGGTATGTGTGTTGTTCAATTTCACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCTGAAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : CCAAAAATATCCAATCTTGTGGGGTGGGCGTCTCGCCCGCCCAGTCCATAGGGCGGACAAGATGTCCACCCCACAAGAAAAAATCCCCGACTTTTTAGAAAAGCCGGGAATTTTATTTTTCTCAATTGCTTATTGCATTAAAATCTGACGGATTAAAATACTCATTACTTCGTCAGCATTACCAGTTGGTACTAATGGACTCCAGTCGCCGACGCTAGCGTAGCCAATGATTTGCAGATGGTGAATTGTGCCGATAACTGCTTTTGAAGAACCCATCAATAAATGTTTAACCGGTTCTCTTTTGGGTAATGGATTTTGAGCCGGTTGATTTAAGACTGGTATATTTAAGTTCTCGCTATCCAAGTATTGTTGCAGTTCTGATTGATTTTCTACAAACTCTTCTTCTTGTGCCATGATGATAATTAACTCTCAGAATGGGGGTTTAGGGAAAGGCGATCGCAAGCTCTTGCCGGAGGGCGATCGCCTTTCTTATTTGCATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 12630-12156 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000192.1 Nostoc linckia z15 scaffold194.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 12629 35 100.0 38 ................................... ACGATCTGTTCCAGATGTTCCCCAAACATTTACAGATG 12556 35 100.0 39 ................................... GACTGAGAAAAAAGGAAAAAACTAAGCCATAAGCTACCT 12482 35 100.0 39 ................................... TAGAGCGTTCCTTCTCTGACAAAAGTCGAAGCAGTCCAG 12408 35 100.0 37 ................................... TTAACTGAAACTCGTTGAAAGTTTCATGGGTTAGGGT 12336 35 100.0 37 ................................... AGTTCAAAATCCAGGTACGGCTGAAAGACATACTGAT 12264 35 100.0 39 ................................... CCTTGAATTCTCTTTACTAATTGAGATGATAATGGCAGA 12190 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ======================================= ================== 7 35 99.6 38 CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GAGTTTGTAGTAAGCACTTCAGTGCTTAAAAATCAAGGACTAAAGTCCTAACTACAAACTTATTTTACCCCTTAGAACTAATGCGATAGACCACTAGGAAACGCTATAAGAAAGCCTATCCCAATAAAAAAGTTGAAGGTTTATTCAACGGCAAGCCACTCTAATCAATAGAATTAGCCCTCGCAAAACTGCTAGGGCTGTTTGAATGTTGTGAAAAATTGCCAAGCCAAAGAAAGTAGTGATTTTTAAGATGGATGTATCATCCTTTGACTCGGAAAAAATAGTTCGGATAATGTAAAGAAATGTAAATTTGCGGGGGGTAAGCAATGGCTGAAACCCTTATTCTATCGTTGACCCCCGCAAATGCTCTCTGGGTAAGGGTTTGAGGGTTTTTATCTGGCGTTTATTGCTAGTAATTCCTATTTATTGGAGCAATATCTTGACCCCCGCAAAAATGAGGGTGTACAATCCAGTGATGGTAAGCCTTCTAGAAGGCTACC # Right flank : GTAAAAATATTTCTAAAACAAGATACCCAACTTTTTTTAAGTCGGGTATCTTTTTTCAGGAATATAGGACAACACCTTTATTTAAGGTTTATTGGTAAAAAACTGGTTTTTTAGACGCGATTCATCACGTCTTTACATGAATAATTTTATGCTTAACTGAATTGTATTAGTATATAGGACTTATGCATTAAGCAGATATCATATTATTTTGCAATACAACAGGGTACGATCGCATCTGTACCAGACTGAGCTAAATCGCCTTGTTTGAGTAGCTCGATCCAAGCCGATATAATTTTTGGATCTTTGTCTTTGGTATTTTGTAAATTTTCTCCTAAAGTTGTTAAAGCATCATACCAAAGACCATGTTTTGCAAAAAAACTAGCTTTTTCCAATGGGGTTTTAGCGGCTGCAAGTTGTTGTGATGATGCATTGAGAGTCACTTGTGTGATTGAACCTTGGACGTAAACAGCAGCAGATGGTTTGTCAGGATCGCAATAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1181-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000217.1 Nostoc linckia z15 scaffold219.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1180 37 100.0 34 ..................................... ATCAAAAAGCCCTGGAATGCTTTACACGTTCCAG 1109 37 100.0 33 ..................................... ATTCTGCTGTGCCGAATGTCAAGCCGCCGTCAT 1039 37 100.0 35 ..................................... TAACCTTGGATAAATCTGTCCTACTGTTGGAAGTG 967 37 100.0 34 ..................................... ATCTCGCCGATTGGTTGAATTAACACCTACACTT 896 37 100.0 38 ..................................... TCAATCAAGGCTTTCAAATCCTGTTGTCTATGTTCAGA 821 37 100.0 35 ..................................... AAAAAGTCACTCTTTAAACGTCTTACATTTAACAA 749 37 100.0 33 ..................................... CAACAGTTACATCCCAAATTACTAGCGCTTTAA 679 37 100.0 37 ..................................... ACACGCTCGAACGGCTTGCACGTCAACAGCAAACACT 605 37 100.0 35 ..................................... AGTATAGTTGCACCCTGGATTAATAAAGAAAATAA 533 37 100.0 36 ..................................... TTTCATTAGAAACACTAGCTTATATACCGTACTTTG 460 37 100.0 35 ..................................... TTTAAGTTCTATACCTGAGATTGATGTATGACAAC 388 37 100.0 37 ..................................... ATAACCTTCCTATTTCGTAATTACCAAATCCAAATAA 314 37 100.0 34 ..................................... TCTAGAAGATTAGGACAAAGATAAAATATAAGTG 243 37 100.0 38 ..................................... ACTTATATAAAATCTCTATATACCCGGTTAACCCCAAA 168 37 100.0 37 ..................................... AATATAGAGGGCAATTAGGGGCTTATTGGTGTGCTAG 94 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 100.0 35 CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : ACATAAAATGCTTTGTGGTTACGGAACTTGGACGCAATACAGCGTATTTGAATGTTTTTTGACCGCCGTACAATTTGCGAAACTCAAGGTGCAAGTTGAAAAGTTGATTAAACCAGCCGAAGATTCAGTGCGTATCTATGTGTTGGATGCTGGCGCAGTGCGTAAGACTATTACCTACGGTTCCGAACAACCTCGACAACAGGAGACGATAATCTTATGATGTTTGACTGTTGATTGTTGACTGTTGATTGACAACTTCCACAACAGGAGACAATAATATTATGATGCTAATACAATGCTAGTAAAGTTTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGTCAGAACCTTGACAATTGAATATTTTTAGCGTTTTGAGTTCTGTTGAGTTCGCTGTTTACAACGGCTGAAATCGACTTTGAAAACACTCCCGCCAAATTTGCTTCTAGAACTTGGCCTATAACTACGTTCTGGCTGGCGGA # Right flank : CGATAATATGTTTTCTGGTTTTAAACGATAATATGTTTTCTGGTTTTTCAGTAATATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 12614-13842 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000217.1 Nostoc linckia z15 scaffold219.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 12614 37 100.0 35 ..................................... ATCACTATGCATAGCCGTTCAACATAGTCAAAACA 12686 37 100.0 35 ..................................... AAAACTTAGGGTGAGTTTGCCAAACAGTGTCACCA 12758 37 100.0 39 ..................................... TGAAATGATTGGTTATAGGTTCCATTACACACCAGCCAT 12834 37 100.0 36 ..................................... AAAATCTTACCGTGATTTATACTCTGAAGGTGTTAT 12907 37 100.0 39 ..................................... AAACATCCTATGTAATTGTCAACTATTGGCACGGTTTAA 12983 37 100.0 37 ..................................... GTGAAGCTACACCCTACGAACTGCTAACAGATCCTAA 13057 37 100.0 37 ..................................... ACTTGCCACCGGCACCAGGATGAATCTCAAGAATGGA 13131 37 100.0 39 ..................................... AACTTATGAAGGGTATGATTGTCTTATTCCAGTTAAGGA 13207 37 100.0 39 ..................................... AATGAGAGAAGACAAGCAGCACAAGAGCTATGAATGGCA 13283 37 100.0 36 ..................................... AACCTCGATAAAAATGGTAGGCCTATTGCAACTCAG 13356 37 100.0 39 ..................................... TGGGTACTGTGGGAAGTCTTACAGCGGGGATGCTTGGGA 13432 37 100.0 40 ..................................... AATTTTCCACCGTGATTTGTACGCCCAGAGTGGGCATAAA 13509 37 100.0 38 ..................................... TGGTCGAAGTATCTTCAGCGCCGCCGTCGCTACCCCAG 13584 37 100.0 36 ..................................... ATAAATAGCATCTGCAAGCTTGTTATCAGCAATCAA 13657 37 100.0 39 ..................................... AAAATCAGACCCCATCGTGGGAGTACGCATTCACAACCA 13733 37 100.0 36 ..................................... AATTAATAATTATCAAAAAAGAGTCTGTGTCAGCTA 13806 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 100.0 38 CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : GCGATGACAGAGGACAAACACATCCCGATGGTGGCTGAAGCTTGGGAGCCTTTTGAGCAACAAGACATTCAGCAATACACCCAAGCGGACAATTCTCAACTCCTGGGTTGAGTTGAGAGTAGAGGGGTTGTAAAAAAAGCTTCACCTGACTTACCCTGTGTTATTTGCACCCAGTTTAGTACTGGTTTCGGGAATATTGGCATCAAAAATTGATATCAATGCTTTTTCTTTGCTTGACCCTAGATAACTTTTGTAAAGTTAGATTTTGTGGAATTGGGAAAATGAGCTTATAATCTGAACCAAGTTAATTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCCACAGAACCTTGACAATTCAATACTTTCAGCCTTTGGAGTATTGTTGAGTTCGCTGTTTGCAACGGCTGAAATGGACTTTTAAAACAGTCCTGCCAAATTTACTTCTAGAACTTGGTTTATCACTAGGTTCTGGCTGGCGGA # Right flank : ATAACATAACCTATATTGGAAGTGACAACTATTTAACTTTCTATTAAATGAAACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 8691-9967 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000231.1 Nostoc linckia z15 scaffold234.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 8691 36 100.0 37 .................................... CTAATGAAGTTTGGTAAAGAAAGGGTTTCAACTAATT 8764 36 100.0 32 .................................... TTAAAGATTTTTAGTTCAACAATTATGCCAAA 8832 36 100.0 36 .................................... TTTATTGCGTTCCGGATTACCAATATTTTGGATGGA 8904 36 100.0 37 .................................... AGACTGAGTTGTGGTTGCCACAATCACCAGTAGGAAG 8977 36 100.0 37 .................................... ATATTCTTGTAATTGATTTTCAAGGATTAATGCACTA 9050 36 100.0 37 .................................... ATTAAGCCAAATGTTGCCTTAAGGTTTTCTTCAACCC 9123 36 100.0 39 .................................... TTCTTGATTCCCCCAGTAGAGAAGCGAGATTTCGTCCGG 9198 36 100.0 35 .................................... CTTGCTGGTTCCAAATCTGCGAGATTTGCCTTTAT 9269 36 100.0 37 .................................... ACGAGCAGTCCTGCGGTTGAACAGCATACAGCGTGTG 9342 36 100.0 36 .................................... GATTGATGTAAACATAAACATTAAACTCTTGAACAA 9414 36 100.0 40 .................................... AGCATTGAATGGTTGGTCGGGTTCCCATGAACCGCAACCG 9490 36 100.0 41 .................................... TTGCAGTAGTAGCAACTGCGCTGTTGGCGACTGCATTTAGC 9567 36 100.0 36 .................................... AATGTTATAAGCAATCCTCCAACATCACCTTGTATG 9639 36 97.2 37 ..........C......................... ATTATGGTTGCTTCAAAATCGTTTTCGCAGTCTCTGT 9712 36 97.2 37 ..........C......................... TCGCCTTTCATGAGAAAATGCAGAACGCGGTTTTTTA 9785 36 97.2 37 ..........C......................... TCGCCTTTCATGAGAAAATGCAGAATGCGGTTTTTTA 9858 36 97.2 38 ..........C......................... TCAAATTCTTCACTGGTAACTTGACACTCACCCATTGC 9932 36 83.3 0 T.........C..TAA...................T | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 98.5 37 CTTTACCGATTGCCCTAAATCGGAATTAATGGAAAC # Left flank : GACACCCATCCCACAATAAACAATGTTTTTAAGTAGATGGACATAAATAAATATAATATGTTCTGTCATTGCGTTCGCGTAGCGTCTCGTAGAGAGCGAAGCGAAGCAATCCCAGAGACTTTGCGATTGCTTCGCTTCGCTCGCAATGACATCTTAGATTTAATCATGACTATCTACTTAGTTGCGCCTTAGCACCTTCCAAACAATAAAGCTAATGCACAACTTTAGTCTAGACACGCCACTACCTTTTCTAATGAGGAAGATTTATCTCACGCAAAGGCGCATAGTCGCACAGAAGATGAGGAGTTTTAGATGTTCATCGACACCAGTCGGGAAATTGCCAAAACACTATATTTTTCGTTGAGTGGTGTCGATTCCTTGCTGCGTAACGATTTGAGGTATGTGTGTTGTTGAATTTCACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCTGAAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : TCTATCGAAAAGCCAGATCCCCGACTTCTAAGTCTGGGATCTTTTTTTTCACGAAGGATTTAATTGCTTATTGCATTAAAATCTGACGGATTAAAATACTCATCATCTCGCCAGAATTACCCATTGGTACTAATGGACTTTACTCGCCAACGTTAGCCCAGCCAATGACTTACAAATAATGAATTGTGCTGGTAAGTAGGTCAACTTAATTAAACATAAAACAATGGTAGGGTGCGTTATCGCAAAGCGTAACGCACCTCAATTGCTATAGTACAGTCTACAGAGGTGCGTTAGCCTACGGCATAAGACACCCTACATTTATTGACATCTACGTATGACGTTTTTTTAGGTTGAGCTACTTAACGGCTTTTACATAACCTATCAATGTATTGCCTAAACTAACGTAATTTTTCGTTAGCTAACCATTTAAACTACTTATCCTAACGTTGCAAAAAAGCAATAAACTGTTACAACATCAAACGATGTAGAATTTTTGTTGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCCCTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATCGCCCTAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 222-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000246.1 Nostoc linckia z15 scaffold250.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 221 37 100.0 35 ..................................... GAAATATCCACCCCAACCTACAACATGATGCCAGT 149 37 100.0 36 ..................................... TATCTAACAGATCTTTATCTTCTATATTAATTTCAA 76 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Left flank : AGAGTGAACACAGCCCAAATCCAATTAATACCCCACGCATGGATTTGTAAACCGGCGGATACCAGCAAAAAAATGATAATAAAAGCGATGGGCATTGCCAACACAACCCATTGCCACAGCTTTAATCGCACCATTACCCTACACCTTTTAAATCACCTTGTAAAAAGTTTATCGTTTTCAATTTGGGTAGGATAATCGTTCTATGGGTTGAGTAATGAGTTATGACTGTTGACTGGGGGTTTTAGCAATGATTTGCGCGGAGCTTGGCTGTTTTTTTAGACAGTAGAATATTTTAGGCTGAAATCTTTACTGTGATTGTATTTGAGCGATTTTTGCTAAAAATAGATCCGCGCAAGCTTTGAAAACGTTGTGTTACAAGGTTTTCAAGGATTTTTGTTTAACCAAAATCTTGACAAGCGATCGCTCAAACGTTAATTTTGAATAGACCCGCGCAAACAGACCTTACAACCCTGTTTTTGCAAGCCTCCCAGAGTCTTGCT # Right flank : CTTTTAACATTAAATACTCTTCTCTCTCTTTCGGAGGGGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4842-4993 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000272.1 Nostoc linckia z15 scaffold278.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 4842 26 100.0 43 .......................... CCTTTTCCCCAAGATTAGAGGTTCTGTCTAGATTCATTAAATC 4911 26 96.2 31 ........A................. CCTTTCCCCTTTTCCCCTTTCCCTTTCCCCT 4968 26 96.2 0 ..C....................... | ========== ====== ====== ====== ========================== =========================================== ================== 3 26 97.5 38 TTTCCCGACTTCTCTTAGAAGTCTAT # Left flank : ATCTATCCAGAAAATGTAACGGTGGGATTAGAACAACCAGTGATTCAAGAATGGGTGACGGGTAAGTTTGTGTTGCAGGTGCAGGAAGATGCAGATAAAAATCGATTTTTATCTGTGGTTGTAGAATTAGCACCAGGAGTAGAAGCTAGCGAAGCTCAAAGAAAAGCGATCGCCTCTTCCATTCTTTCACAACTACTACGCCTAAATAGCGAATTTGCTAACTATGTTCCCGTAGAATATCAAACACCACAGGTGACATTAGCTCCAATGGGCGATGCTGAATATTTCCCTGTTGGCGTGAAACATCGTTATACCCGTAAATAAGAGACCTGCCTTGAAAATAGAGGCTGAAACAACGCAAAATCCTTCCAAGATCATTTTCATTGTTCCTTGTGAGCGCAGCTCATGGAGTAAGAGTGCAATCAATTGCTTTTTGGACTCTTGTGGTCAAAGGGATACATCTTTATTGGGGAAAGGGAAAATACCAAACATGCACCTTC # Right flank : TTAAGTAGAGGGGTTGTTGTTGACCGTTGGGGAAACTCCAAGACCTCAGTGGCTCCGGTTTACAGTCAACAGTCAACAATCAACAATCAACAATTTTCAGTTTCATTACCTGACTACCGCTTCAGTTTTTTCCTTAACTGGTACATAGGGCTTTTCTTCACCCTGCGCCAGATATTCTGCTAACTGACTTTCAATTTGGTCGCGGACAATTTGGCGATACTCTAGAAAATGTTCGTTGTGGGCACAAGCGGCGAGGTAATGCTCAAAAACTTTGGGGTTACGTTTGAGAATACTAAATAAATGATGCCAGAATTTCCAACGGGTTTCGCGTTTGATTCCTTGTCGCCAAATCACAAGTAACAAGGCTTTCACAACTACCCACTCTGGCGTTTTAGCTGGTGCTTTCCAAGTGGGCGAACCCATCATCAAGAAGCAGCGGTAAGTACGATCCAAATATTTAACTGGGTCGTATAAAGTACAAAACGCCTCAATATATTCTC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCCGACTTCTCTTAGAAGTCTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 11641-9953 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000116.1 Nostoc linckia z15 scaffold116.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 11640 37 100.0 34 ..................................... AATGACCCAGAGCTTCAGGCAATGCAACAACATT 11569 37 100.0 33 ..................................... AGATAATTTCTAATGACACAACTTAAGCCAGTT 11499 37 100.0 41 ..................................... TTGTGGGTAGGGATTAATCAAATCTTTGTAGCGATTGTAGG 11421 37 100.0 37 ..................................... ATGCCCCTCTGGGTTGCTTACATGACCTTTAGGCGCA 11347 37 100.0 33 ..................................... AAAAGGATAATGGCTAATGGAACCTTCCTTGCT 11277 37 100.0 34 ..................................... AGAGAATGCAGAGGACTTATACTTGATGAATCTG 11206 37 100.0 34 ..................................... CCATATTTATTATCCTTTTAATATAAATTATTAA 11135 37 100.0 36 ..................................... AATATTAACTTGCAAGGAGAGGACAATTTATCACAA 11062 37 100.0 35 ..................................... AAATCAGAAAAATTAATATACTCAAATCCCCAATC 10990 37 100.0 34 ..................................... AATATCAAATCTGCTGTATTAGCAATCTCTAAAT 10919 37 100.0 33 ..................................... ATCTGCTCTTACTTGAGAAACTGTTCCCGCTTC 10849 37 100.0 34 ..................................... AAGTACTGAGCGGTTCCCTGGCTACTACGATCGG 10778 37 100.0 35 ..................................... ACAGACCTTACAAGTGTACCTGTAACCCGTGGAAG 10706 37 100.0 34 ..................................... CTGGCTCAGGCTGCCACTTAATCACCACAAAAAT 10635 37 100.0 34 ..................................... TTGGAAGATGATATTAGAATCGTCGAGGGAGCGA 10564 37 100.0 33 ..................................... ACCTACCACCAGGAATGATTTGAGGGCATTGCC 10494 37 100.0 40 ..................................... CTTTGTAGAACAAATTGCGCTGTTCGACCCTGACATCAAA 10417 37 100.0 35 ..................................... ATCATGTTGAGCACCCTATCTAAGTGCAGCCAATT 10345 37 100.0 32 ..................................... ATCTTGTGTGGCATCTCCTTCCTCGGCCCCCA 10276 37 100.0 38 ..................................... CATAGGGTTTATGCGAGCGAGTGTTGCTAGCGCTTTGG 10201 37 100.0 33 ..................................... GGCTAACCAGAATTAAGCAGAAACCGACTACTA 10131 37 100.0 34 ..................................... ATAAAGCACGAGCATCGGATCGATACTTGGCACT 10060 37 100.0 34 ..................................... GATTTTAATACTTATCGCCAAAAATTTAAGGCGG 9989 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 24 37 100.0 35 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CCAATATGCCAGGAGCCGTACCTTGGACAGCAACTCAGGCACTCAATAACAGTACATTACCTTATGTTGTGCAGTTAGCGAACTTGGGAATTAAAGCATTAGAAGTAAACCCAGCTTTAGCTAAAGGTGTGAATGTGCAAAATCATAAATTAGTGCATCCTGCTGTGCAAGAGGTTTTTCCTGATTTAGTGAGTTAGAAGCTGTGCAAGTGTTGGGCGATCGCCTATGCTAATGGTGGCAATCTTCATCAATTAGACTAATTTCGTTACCAAATGCGCGGATGGGTAGCTGTAGAAAATCAAAGCCAGCAAAAAATGGCTGCATCTCAATGTGTACAAGGTTTTGACGACTATAGAACTTTTAAACCATCCGCGCACCTTACGGAGACTGAGTTTCAGCAATTTTGAATTGTTTGACTACCATTTCCTGTGTTATCATTCTGTACATCCGCGCAACTGCACCTTGAAAACCAAATACAGCAAGTCTTTTTAGTGCCGGCG # Right flank : TCTGATTTTTGAGTTTGTACGAAATAAAAGCCTTGAAGTTACGCGGATTCTCAATGCAGAGGAAGATATAGCAAGCATTTGAGAACAAGAGGTCTATTGAATAGCGATCGCCATTATGATTGTATCGGTGGAGTACTGGCATTTGAGGTCATTTTTGCCTTATCGCCCTCAGACTTAGTACAATATTTCACCCATTCAGTGTATGGCGATCGCTTTCCTCTTTGGATATGCTTTAAGAAGTATTAAAACTAGGCTCCTATTTTTCGGTATCCGTATCTGAGCGATTGTAATTATTAAACTGACAAACTTGAGAAATTTAACAATGAAATCCTTTTCTATTCCCTTAATTGTTGTAATGAGCGCACTTGCTCTTCCCCAGAGTGCCTATGGTAACGAACAGAATGTCCCAAATGCAACAAGCGATGGCAATCAGGCTGAAGCTTTATTGACTCAACCCGCCTCCATTAATACTAAGTGGAGAAATTTTAGCGGACAGACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 5057-5472 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000314.1 Nostoc linckia z15 scaffold324.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 5057 36 100.0 42 .................................... TTGTTCCATCTGAATGCTGATAGAACCTATATCTTGTAAGTT 5135 36 100.0 40 .................................... ATATTTGAAGGTAGAGATTTTGTTGGAAGTAAACATTTAC 5211 36 100.0 38 .................................... TTTTTAGTCGTTTCAGTTGTTAGTCGCTCTTGCTTCTT 5285 36 100.0 34 .................................... TTAGAAGCCGTTGAACGATACAAGGTAGATATAG 5355 36 100.0 46 .................................... AGGACTCATCTTGTCTAAAAAGCCAGTTCCATTTTTTACAACTACA 5437 36 94.4 0 .......G......A..................... | ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 99.1 40 GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Left flank : TAGTTATGAGCAGTTTCAACTGGGATTGTTTATGATGAGTCAGCATATTATTGGTGTAGCTACAAAATGAACAAGTAAGTTTTTAATAATTATTTTTTGGTAATATAAAGTTAATTTTTCAATATTACATGGGGAAAAATCGAACCGCAAAGTACGCAAAGAGATAAGAGTTGAAGTAGGTAGCTATGATTAAACAAGTTGCAAGTGGCAAGTATAGTTTTGTAATGGGGATTTTAACGCCACAACAAAATTTGCTGGTTATAAAACTGGGGGACTTAAACCCCCAGAATTTGTTAAATCTCAGAAATTATTGTTTCTGTGCGGCGGGGTCGAGTCTATGGTGCAAATGCTGATTCTCTCGTTAACCCGGCCGATATCCTTCTACACAAGGGTTTCAGAGTTTTTCGCCTCTGCTTTTTCTCTGGAAACAGCCTTCGGTTTCTACCCCGTCGCAAATGGCGTCTGGACATTAGGTGGTGTCAGGGTTTAAATTAATAGGG # Right flank : CCAGCAATCTTTGTTCCATACCAACATTACCCTGCAAGCCACCTGTGTGTACCAGCAGCAAACTTTTGCCTTTAGCAAAAAAACCCTGCTGTAATAAATCCATCACGCCATAAAACATTTTGGCAGTATATACATAATCAAGAGGTACATTGTGCGCCGAGCTAAATTCTTGGCTGAATCGTAGCAACTCCTGATTGACTTTTGCATAGCCGCCGAAGTGATAATCACACATTAATTCCCAACAAGCGGGAGAATTATATGGACTCGGTAAACCAGAGGCGAGGTAATTTGTCAAGAGATTTTCTATTTCTTTTCCTAGAAAATTGCCATTTTTCAACACCGGAAAAGCGATCGCTTTTTGTCTTTGATTTAAAGAAAGTGCAATTCCAGCCAGCGTTGTTGCAGTACCGCAGGCTAGGCAAATATAATCAAAGGCGTAGCCAGCGGTAGACATCCCTTGATTAATTATCTCTGTACAACCGCGCACGCCGTTTAAATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 37-586 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000366.1 Nostoc linckia z15 scaffold386.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 37 37 100.0 36 ..................................... AATTAATAATTATCAAAAAAGAGTCTGTGTCAGCTA 110 37 100.0 36 ..................................... ATAACATAACCTATATTGGAAGTGACAACTATTTAC 183 37 100.0 37 ..................................... ATATGGATCTGGAGTACCGTACTCGTTCGGATACGGA 257 37 100.0 39 ..................................... ACTAAACTGTGGCTTGCGGGGGAACCTCCAGCACCAACA 333 37 100.0 37 ..................................... AACTCTTCAAAGTCTTTGTACCCACCTTGGGGTTTAT 407 37 100.0 36 ..................................... GATAAGTTATGGCACTCGTTAAATATAAGTGACTTA 480 37 100.0 33 ..................................... ACTTACAAAACTCTGCAATGTTTGAAAACTTAG 550 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 100.0 36 CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : ATCAGACCCCATCGTGGGAGTACGCATTCACAACCAC # Right flank : CGTCCTGAACAATTTATCGCCGATTTTGACGAATCGACCTTTCTATTAAATRAAACCCGGCAACGGGATTGAAACATTATCCCCTTTATTCCATTGATTCTTCAAATACCAGCTTTCTATTAAATGAAACCCGGCAACGGGATTGAAACGATTCCGCTTGTCTTTTTTACCAGTAAGGGCGATCGCCTTTCTATTAAATGAAACCCGGCAACGGGATTGAAACTTGAAGCGTAAAAACGAGTATTAGAAGAATCTACCCTTTCTATTAAATGAAACCCGGCAACGGGATTGAAACAATCAAAGAGCATTATCACATGATTAATATCACTGGCACTTTCTATTAAATGAAACCCGGCAACGGGATTGAAACCTTTAGCGTGAGTGATAGCTCTATCTGTCAGAACATCTTTCTATTAAATGAAACCCGGCAACGGGATTGAAACCAGCCCGTAACCCGATCGCTGATCGAAGAATAGTTGCTTTCTATTAAATGAAACCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 32742-31490 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000046.1 Nostoc linckia z15 scaffold46.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================== ================== 32741 37 100.0 38 ..................................... ACTTCAAAAGTGCTTACGTGGTTTGGGAACCTGAAAGG 32666 37 100.0 36 ..................................... GTTTCTATTTTAACCGTACTTATACGGATTAATGTT 32593 37 100.0 37 ..................................... TTTTTCAAAAATTTTAAAAATTATCACCACCCTGGAA 32519 37 100.0 38 ..................................... ACTCAAGACGCGATGCCAAAAGGTATCAATTTAGATTA 32444 37 100.0 37 ..................................... AATATACGTAGGCTTTCTGAACTCAATGATTTTATGC 32370 37 100.0 40 ..................................... AATTATTCATCTCGCTTCGGTCTTTATTGGATATTTACAA 32293 37 100.0 37 ..................................... GATTCAACGACATTATATAAACGGGCAAATAATTATT 32219 37 100.0 36 ..................................... TTATCAAAACTGCAACCGAAATAAACGCAATCACTA 32146 37 100.0 34 ..................................... TAACATCTAAAGAGGATGTAGTTCCAGGGGCTGT 32075 37 100.0 75 ..................................... CTGCTGGTTCTACCCTTGGTGGGGCTAGAGGCGGGTTGAAAGAACCAAGATGGAGATTCGTAAAAATTGAGGGGA 31963 37 100.0 38 ..................................... AACAAGCAACCCAATTAGCATCCCTGGTCTTCCACTCA 31888 37 100.0 37 ..................................... TTCAAAAATACTTAAAACCCAATGAATCAGAAGCCGC 31814 37 100.0 37 ..................................... GAAACCCTCAATTCACATGCCCCGCACGGTTAGTCGG 31740 35 91.9 34 ............................A..--.... GAGGGACACACAAAAAACAAAAGCAATCAGAAGT 31671 37 70.3 37 A..........GT..T...T..C..AT..T..A...T CAGGAAAAATGAGACTTTGCTCGATAATACTTTTTAC 31597 37 73.0 33 ....A..A.G.AT...T........AA...C...G.. GATGTTTGGAAATTGACAATTTTTTTGGAGAGA 31527 37 70.3 0 ....T..A..TT...TT.AAA.T...T.......... | C [31521] ========== ====== ====== ====== ===================================== =========================================================================== ================== 17 37 94.4 39 GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : ATTAGCGATCGCGGCTTACGATTCTCGCAAAATAAACTGATTGACAAAACACCGAACCTTGACAATAGAATGAAAATATTCAATAGCGCCGCAGTTCATACTTGTTACAAGTCTCTGTGCTGCGTAAATGTGGGTTAGTTTGACTGCTGTTAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGTGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGACCAAGGAGGAACCCACCTTAATTATTTTTTGGCATGGTAAAGCAGGGGCGATTTCCCTGGCACTCCTGCCAAAACTTTAAATCGCTTGTTTAATAAGGTTTATAGCCTTTAATGTGTCAGTTGATTTACTTTTTTAAGTATTAACTGACCAGCGATTTTGGGAGACATGACAAAAATGCCTTCAGAACTATTGGTAAATCAAGAGTTTGAAGCGCAGA # Right flank : ATTGGTAAAAGTCATGGAATTCTTGGACTAATAGGACAAAAACTTGTCAACTTACAGCAATTTTCATTTCTTTGAACCACAAATCCCCATAGGGGGGTAAGGTCTTGCTGGCAAGGTTGATGTATGACAGTAACACACCACGCTGAAAAGTTTAACGATATTTTTAACGATATTATTTTGTTAATGGTTAGCTAACACAATTGGATTACATAGTGAATGCGGACATTATTTTGGCAATACTGACATTAATTTGTCAACGCGGACAAATAATTTGGCAATCGACAACAGTCAACAGTCACCAACTTTCATCGAACTCACGTTAAGTTAAATTCCGTGACTTTTACCAATTACCCAATTACGTCGGAAAAAACGAGCTAAGGCTGACTCTTCTAGTGATAAATAAATTGGGCGTCCGTGGGGACAGGTGCGGGGGTTGCGAGTGCGTTGCCAATCATCTAAAAGTGTCTGCATTTGTTGTAGATTCAATGGCGTACCGTTCC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3655-5284 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000407.1 Nostoc linckia z15 scaffold483.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3655 36 100.0 37 .................................... TTTACCACTACCTCAGCAAGTGGTTTTTCGTCGTCTG 3728 36 100.0 37 .................................... AAGAATCACAAAAAGAATGAAACAGACGACAGCGGTT 3801 36 100.0 38 .................................... ACCATCCGTGATACCTCCTCCAATAATTTCATTAGTGC 3875 36 100.0 36 .................................... GCATATACTTCTGAAGTGTTGGTTTGTGGGAAAGAT 3947 36 100.0 32 .................................... TCGTATTGCGCTTGATTGGCAGCTTGAACAAG 4015 36 100.0 35 .................................... TTTACCGTGGCGTATGGGCTTTTCGCTTTAACTTC 4086 36 100.0 37 .................................... TTTGTATCAGGTGAACTCATGCTTCCGCTTTTATCGA 4159 36 100.0 35 .................................... CTGTCCGTAAACCTCAACTGGCACATATTCGACAT 4230 36 97.2 38 ..........................G......... GTTTGTAAATTACCCTTAGCACTATTTTGTTCCCATCC 4304 36 97.2 36 ..........................G......... TTTTTACGGAACTATCTTGTAGTAGAATTGCGTATT 4376 36 97.2 36 ..........................G......... CTTGCGGGGATGGGGCCGTACCAGTCACGCCGAGCG 4448 36 97.2 35 ..........................G......... TTTTCTTGTAAGATTGATTTCCTAAATTCCCAGTA 4519 36 97.2 35 ..........................G......... TTCAGAATGCCATCGCTGGCTTTTGTTTCAATTTC 4590 36 97.2 39 ..........................G......... TTTCCTGTTGCGCGATGATTGCAAAAATGTCGCGGTACA 4665 36 91.7 36 ..........C....G..........G......... TTCTTAGCTGCGCCGGCAAAAGTGTCGTCGTCTTGC 4737 36 91.7 36 ..........C....G..........G......... CATTGAGCTACGAGCTTCATCCTGTATACGCAGCTG 4809 36 94.4 34 ...............G..........G......... AAAGGGGTCATCGGCGACGACGACCACATCCTTG 4879 36 91.7 39 ..........C....A..........G......... GCCTAACACACCATAGACAAACAGCTGTTGTTCGGCCGA 4954 36 100.0 37 .................................... CCTTTGTTTCGTAGATAGCCGGCGAGTAAACCCGCCA 5027 36 100.0 36 .................................... CGTCTCACCAGTCTCGGTGTCTGTGATCTCCACCGA 5099 36 91.7 39 ..........C....A..........G......... CTTCTGGTTAGGCACTCCGTTGCGTTCCAGTTGGAAGCA 5174 36 91.7 39 ..........C....A..........G......... CTTCTGGTTAGGCACTCCGTTGCGTTCCAGTTGGAAGCA 5249 36 91.7 0 ..........C....A..........G......... | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 96.9 36 CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Left flank : TGGGGGCGAACAACCGTTATTGGTGTCAACTTAACGTAAAACCCTTGTAATGACGTTAGAGCAAACTTACTCAATTACTAACTAATCGACAGTCACCCCACCCCGGTTTTGTCTAAAGCCAAAACCTCCCCTCCCCGCCTGCGGGGAGGGGATTGAGGGGTGGGGTAAAATGGCTGTGGGACAAGCGTTTAAGCTTAAGTTGACACCAATGAACAACCGTTCGCCCCTACAACGTGGTTTATTTACCTGAAAATTGCTGTAAAATCATGTGTTGCGATGTGTTGACAATGCACCCTACTAAGGAAGTTTGAAATGTTCATCGACACCACTCGCCGAATGCCCGAAACCCTATATTTTTCGTTAACTGGTGTCGATGCTTTGCAGGGCAAGGATTTGAGCTATGTATTTTACTTAATTTTCCACCAGGTATATAATCTTTTTCAGAGTGGTGTCGATTTAGCGGCTAAAACCCTGACTGGGCAAAGCCTCCTGAACGAACT # Right flank : | # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATTGCTTTAAATCGGAATGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1017-2418 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000069.1 Nostoc linckia z15 scaffold69.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1017 37 100.0 36 ..................................... ATCGAAGTTGCTCAAGCTTACGTTTCTCAGACTGGT 1090 37 100.0 36 ..................................... GTTACCTCAAGAAGTTGTAGTACAAGCAATTAAGTT 1163 37 100.0 36 ..................................... TGAGTTCATAACTCTATCAAAAGACCAAATAAAACT 1236 37 100.0 34 ..................................... GTGATTCGTGAGATTCAAATTCTGCTAAATGGTG 1307 37 100.0 34 ..................................... TCTTCATCTATCTCGCATGGGTCTACAGCTAAGA 1378 37 100.0 35 ..................................... ATAGGAAAAGGTGAAAACCCAGCAACCGACAAGGA 1450 37 100.0 34 ..................................... TTAGATATTGACTATTACACTCAGAGTAGTTTWA 1521 37 100.0 38 ..................................... ACTGGTGTAGCAACTTTAGGAAGTGCCGCAGTGACCGG 1596 37 100.0 36 ..................................... CAAGAGAAAAGTATCGTGACGCCACTAGATTAACAA 1669 37 100.0 35 ..................................... GAAAACTTTGCAGAAGATGAACAGCTAGACTTTGC 1741 37 100.0 32 ..................................... GAATTCTAGGCATATTCCCAATCATCGCCAAT 1810 37 100.0 34 ..................................... AGAATCCATGCGATTGCTCGCGTCTTTCCCTTTG 1881 37 100.0 31 ..................................... TGGATGGTATGGAGTGCTACCAACTGTTAGA 1949 37 100.0 39 ..................................... TTCGAGAGTACGCAAGACACCTTACAGAAACTTGTTGTA 2025 37 100.0 35 ..................................... CAACTCAAATTAATCGGTGGTAAAGGATCTTCTGA 2097 37 100.0 35 ..................................... CCCAGTCAATAAAAATTCCAGATACAGGGTAGTCG 2169 37 100.0 33 ..................................... TATGAGGAGAATAGCGTTGAATATTTACAACAG 2239 37 100.0 34 ..................................... ATCATTTAGGCGTGATAACCCCATAAATGCCTGC 2310 37 97.3 35 ...........C......................... CTGATTTACTGCGAGTTAAGGCAACATAAAGCAGA 2382 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 99.9 35 GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Left flank : CAATAAATATTCTGAATTGTTCGCTGCAAACTTTTGTATCGCTTTTCATGTAACTGCATACCCTCAGGTAAAGTTAGATCGGCGGCTATAAGTAGGCCGATGTAAATAATTATTGTTGGGATAAGGCAGTTCTTGCTGGGAGCAGGGAGCAGGGAGCAGGGGGAGAAAGAGTTTGAGCCTTATTTACTTTTCTTTGCATAGTTTGGTTTTATTTCACCGACTTACTTAGTCAAAAGTGAAAAGACCAGCAAACGCCACAAAATTTTTATCCAAATGCGCGGATGGGTAGGTGTAGAAAATCAACCTTTGACAAAAATCTCTGTGTTCCTCTCAGCACAAACCTTTCAGGCAAAAGTAAATCAAAATCACCCGCGCATCATGCCCAGACAGCATTTCAGCGATTTAGTGTCAATCAATTGAAATTTTCTAGTGATACAATTGACCCATCCGCGCAACTGAACCTTGAAAACCAAATACACATTAGCTCTAAGGCTTTGGCG # Right flank : CTTAAAATTATTAAGTCAACCATGAAAAATAAAGGCGTTGCTGATTGAAAGTATGAATTACTTTCACACATAGTCAATTAAAAATTATTTAAATAATTGTATATTCACCTTGGGCGAGAGCATCTAACTTCGCTCGGTCTAATACCAAAATTTTTCCGCCTCGATGATAGCGGACGCTCGAATGGATTTGCTTGAACAATCTTACACACTCTTCATAGGTAATTCCAATGCTACGAGCAATTTGATAATATGGTAAACGCGATCGCAACAATTCTCCCTGTTCAGTTACTTCCGTTCCTTCTGTAAGTGCTGAGAACTTCAGGTATTGCGCTAAACGCACAATTGCGCGTTCTGAAACTAATCCATGCACCGTTTGATGTAGATGCTGGAGACGCTCTGTCAAAACTGCAATAATCCGCAAAGCCACTTCTGGAGTATGGTGAATCAGTGCTAGTAAAGCAGTACGCTCCAGCATCAGAATTTTGCAGTTTTGCTGTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 19302-19774 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000007.1 Nostoc linckia z15 scaffold7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 19302 37 100.0 34 ..................................... TACTTGTTTGCCAAATGCTTGAATGCTCCCGAAG 19373 37 100.0 36 ..................................... CTGGCTGTAACTTAGCTTCAAAACTTTCAGCTTCAA 19446 37 100.0 34 ..................................... ACTTTATATAAACCTGAGTTTAAGTTTACCAAAA 19517 37 100.0 33 ..................................... GGGATAAAGCAGACCCTTACAAGCTAGAACCCG 19587 37 100.0 35 ..................................... TACTATATCTGGCAATCCACAGACGGGAAGCATTA 19659 37 100.0 42 ..................................... TGCTTGGACTGAGATTTCAAATCCTGAATGCGCCAATTCTGC 19738 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 100.0 36 ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCTTATGATATTTCTGAAGATAAACGCCGTACCAAAATTCACAAAATTCTCAAGTCCTATGGACAATGGGTACAGTACAGTGTATTTGAATGTCATCTGACAGATACTCAGTACGCAAAATTGCGATCGCGTTTGAACAAGTTAATTAAACCTGAAACCGATAGTATACTTTTTTACTTTTTGTGTGCCTGCTGTCTCGGTAAAGTTGAACGTATTGGTGGCGAAAAAATTCGTGATGACTCTATTTTCTTTGCTGAGTGCGCGGATGGGTAGATGTTGAAAACCAAATTGCAGCAAGCAACCTTCAAATTCCTCTGCTGCAAGAGTTTTGGGGAAAATAGCTCAGAAAGTACCCGCGCACCTTATACAGACTAGGTTCTAGCCATTTTCCTCAAACCCAATGTCCATTTCACATGCTATGATTTCCTCATCCGCGCTACCGAACCTTGAAAACCCAATACAAACAATGTTTCAGGCTACCGCC # Right flank : CACAGATGAAACCTAATGTGCAGAGATAGTTAATACATCGCTAATAAAACTGAGCAAACCTCTGCGTACCTTTGCGCTGTCCTCCGCGCCCCTCTGCGTTTAAAAAATTATTTCCACACCTCACTTAACTAAAAATCCCTATAAAAAAGAGAGAAATTAAAACTGATTCCTCAATCAAATAGAAATCATCACATTCAATAGTGAAACACCAATATCCAGCATCCAAAATCCGAAGCTGACTATAGTGTTAGGAACTTTTTTTTTAAGAATTTACCTCCTGAAATATCCGAAATTTGTGGTAATTCAGTTCTATTTAATGATTCAACAAAACTCAAACCCAGAGACTTACTAGAAATGCTTTGAGTGTAGCTAGCATTAAGATAACGAATATATTGTGACTTTCCTGCAATATAACTTTGGAAAAAAGGCAAACTTAAAACAGTCATATAACGACGCGCTTGGGAAGCATCGCCAATCATATCAGCAGGTAATGATACTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 28283-27424 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000082.1 Nostoc linckia z15 scaffold82.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 28282 37 100.0 37 ..................................... TTTTAACATTAAATACTCTTCTCTCTCTTTCGGAGGG 28208 37 100.0 39 ..................................... GGCATCAATAAGGGAATTATTACTATATACATAAAGGAA 28132 37 100.0 34 ..................................... TGATTGCTTTCACGTTGCTGGCATAGTTAGCAAC 28061 37 100.0 36 ..................................... CCTGATTTGGCAGGTGTCCAATCTAAGGATGACCAA 27988 37 100.0 35 ..................................... ATTGCTCAGGGGTAAATCGGAGTCGGCGCGGTATT 27916 37 100.0 36 ..................................... GTCTTTAGCCCCAGATGTTGCTCCATCCAAATAAGA 27843 37 100.0 47 ..................................... TTGATTTGGGTGATGCGATCGTTTAGCCCATCTTTGATGTAGTCAGC 27759 37 100.0 34 ..................................... TCTTAAAGTAGAAATTGAACTTACCGATAAGTTC 27688 37 97.3 37 ......................T.............. GAATTGATTTTGTGCTGGAGTTCTGGCTCTTGGAGCA 27614 37 100.0 37 ..................................... TAAAGTTTCACCATTTACTCTGTACAGATGGGGTGAA 27540 37 100.0 43 ..................................... TTTTCCAAAGATACACATGCAAAAATGTGCATATCAGTCACAG 27460 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 12 37 99.8 38 GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Left flank : CTATATTAATTTCA # Right flank : ATACGTTCAGAAATTATAAACCCGCTTAAGCGGGTTTGTTTGTTTAGATACTATCTATAATTCAATACGATTCAGTTAAGCATTTCTTCCTTCTCTTTGCGTCCTTTGCGTCCTTTGCGGTTCGTTAAAAAAATTGACATTGACAAAGACTTTTAGCCTTAACTAAACCGTATTAGTCTATAATCCAATACACTTCAGATAACACCAAAACACTTGTAGACAGCGATTTATCGCGTCTGATAGTCCTCTGCCTTTCTTGATAAATAGAAGAACTAAATTAAACCTAACTCGATATCGCCGGGTTTCCACACTTCGACAGGCTCCCTTCGACAAGCTCACGGCGGCGCAGTGCATCGCTGCACTCAACCCTCTTGGAATAAGCTTAACGAGCATTGAGCAAAGTCGAAATGCGTCTTCTAAATAATTGTGTCCACCTACTTCAACTAAACCTTATTTAAAATTCTGAATTCTGACTCCTGACTCCTGACTCCTGACTCCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1072-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000479.1 Nostoc linckia z15 scaffold803.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1071 37 100.0 40 ..................................... TCGCATCAGGCAAACCGGCCACTGAGTAAGTAGTTGAGCC 994 37 100.0 36 ..................................... GAATAGCCGAGACATCCTCAAGAACAAAATTATCGT 921 37 100.0 34 ..................................... ATCACAATAGTTTTATTAGTAATCAGTTATCAGT 850 37 97.3 37 .......................G............. TTAGAAATTCTTGAATCACGTAAAAACGGTAAAAATT 776 37 100.0 37 ..................................... TTAAAAGAGCAAGTGAGACAAGCACAAACAGAATTAA 702 37 100.0 35 ..................................... TCACCACGAATTACAGATTGTCCCACCAGCAAAGA 630 37 100.0 37 ..................................... TCCTAGTCCAGTAGAGATAGCGCACATCAATGAAAGA 556 37 100.0 36 ..................................... TTCAGTCAGAAGCCCGAAGCAATGGCGGATACCTCA 483 37 100.0 37 ..................................... GGATCGCATTTGAAGGATTAGACGGAAGTGGTAAAAC 409 37 100.0 34 ..................................... AATCAAGATAACTTTTGGGAGATGTCAGCCGAGA 338 37 100.0 37 ..................................... GGGTATATATTACTGAAAAACCAGAAAACATATTATC 264 37 100.0 37 ..................................... CTAGCACACCAATAAGCCCCTAATTGCCCTCTATATT 190 37 100.0 38 ..................................... TTTGGGGTTAACCGGGTATATAGAGATTTTATATAAGT 115 37 100.0 34 ..................................... CACTTATATTTTATCTTTGTCCTAATCTTCTAGA 44 37 97.3 0 ......C.............................. | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 99.6 36 GTTTCAATCCCGTTGCCGGGTTTCATTTAATTGAAAG # Left flank : GGGCGAGATTGGGGTCAATTGCCAATGCTTGGTTATGGTCAGCGATGGCTTGTTCGTAATCTCCTAGAAAGTAGCGTGCATTAGCGCGGTGATAGTAGGCTGTGGCAAAATTGGGATTGATTTCAATGGCGCGATTAAAATTGGCGATCGCACTGTGATAATCTGTGAGACTACTTGAAATAATTCCTCGATTATGGTATGCTTCGGCGTAATTTGGATTGAGATTAATTGCTTGGGTGTAAGCTGTAACGGCTGCTTGGTATTCCCCTTGCAAATTTTTGTTTAATCCTTGGTGGAAAAAATCTTCAGCATTCATAATAAATAATTTTTTTATTTATGATAAACGCTGACTTTGAAGCATGGGAATTTTTAATTATGATAATTTGAAAACCGTTTTCAGTTCTATTTTGCCTAGTGTTGAGATTTTTGGTTGTAATAGAGCGATCGGGTTTCATTGAAATTGAAAGTTTGTCCTGTGGTTTGTTATATCTGCCATAGCT # Right flank : GTTATTTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCGTTGCCGGGTTTCATTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 6922-6229 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHH01000084.1 Nostoc linckia z15 scaffold84.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 6921 36 97.2 38 ...............C.................... CTTTTGGTTGCTGCACTGTTTCCACAGTTATGTCTCTG 6847 36 97.2 37 ...............C.................... CCCTAGGCCGCAAGCGCCTAGTAATACCCTCAACCCG 6774 36 97.2 37 ...............C.................... ATTAGAGCTGAGTAGACCGCGTCAATATGACCGGCCA 6701 36 97.2 42 ...............C.................... TCAAGCATATCAAAATCTGAAACTAAGACTACTTTATGACGA 6623 36 100.0 34 .................................... AATTTTGCTACGAATTGACCGCATGTAAAATCTG 6553 36 100.0 35 .................................... GTTTTCTACTCCACTGGTCTCTTTTGTGTCCTTCC 6482 36 97.2 39 .............T...................... AATCAAGAACAAACTTTCCTTCCGCATTTTTCCCTAGAA 6407 36 100.0 34 .................................... TGAACTTCCTTCAAAGTCGGGTTTTCAACCAATA 6337 36 100.0 37 .................................... TTGTCACTGTTGACGACAGCGCTCAACCAGTTAGGCC 6264 36 97.2 0 .......A............................ | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 98.3 37 CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Left flank : AATTATAAGTAATATTCACATTTGATTTACTTTGTTGGTACACAGGCTTAATTTCTTCCAGCGCATCTTTTAAGCTAGCAGCGGCTGACACAAGTATGTTGTTTGACTGGGCGACTACACGAGAAGGAGTAACTAGTGGTAAAATAATTGCTAGCAATAAACCAGCAATTGCTATACCCAAAAAGCCAAGAATTTGTCTTCTTTTCATGGAAAAAGCACTTTAGAGGTTTTTTTCATCAAATTGATGCTAGCTAGAATACTACCAAAAATACCAAAATTTACCCAACTATATCGGTAAAATTTTTGTATCAGATGTTCATCGACACACCCCGCCAAATCTTCAAAACCCTATATTTCTCGTTGAGGTGTGTCGATACCTTACAGGACAAGGGTTTGAGGTGTGTGTTTGACTTAATTTTTCACAAGATATATAGTCTTTTTCAGAGGTGTGTCGATTTGGCGGCTGAAAGCCTTGCGGGGCAAAGCCTCCTGAACGAACT # Right flank : TTCTTGCTGTTGAGATGCGGTGCAACATCATAACTTGTAGCCGCCTTAGCAAGGAATCCCCATAAAGCAAGAATCCCACGGCTTTTTGTTAAACTCAGCAAGAGCGATAGTTTAATAGCCGTGGGATTTTCAGTTATGCCTTCTCCATTTCCTGGTATGAATCCCTATTTGGAACATCCTTCTCTGTAGACAGGAATTCATCATACAACAACTCAAGAAAATACGAATTACGAATTACGAATTACAAATTATTAGCCATCTCTAATAACTGTGCTTCGGTTAGCTGGTTAACTCCCAATGAAATGGCTTTTTCTAACTTAGAACCGGCATCTTCTCCTACTACTAAATAATCTGTTTTTTTACTCACAGAATCAGTCACTTTTCCGCCGGCTTTTTGAATCAATGTCTTGGCTTCATCGCGTTTTAGAGTTGGCAATGTACCCGTAATTACGAAAGTTTTTCCAGCAAACTTTTCATTAATATTATTAACTGTTTCTGTT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATTCCCTCAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //