Array 1 506864-507150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009577.1 Listeria ivanovii subsp. ivanovii strain WSLC 3010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 506864 29 100.0 35 ............................. CTGTATAAATTTCATCCGATGAATTTCGACATCGT 506928 29 100.0 36 ............................. AAATCGTTGTGAGATAATTATTTCAGATTGAGAATT 506993 29 100.0 36 ............................. GTGATAGAAATGTGAGGACTATCCGTTGCCACGCCA 507058 29 96.6 35 ................A............ ACATACAAAGCGGTTTGGAAATTTTCTGAACCAAC 507122 29 82.8 0 .......C....C..GA.....A...... | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 95.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TCAGCTGACGTTCTATTAGAAAAAGGTGCTGTAGAAGTAATCGCCTGTGCAACTCATTCAGTTATGGCTGGAGATGCAACAGAACGATTACAAAACTCACCAATCAAAGAAATAATCATATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGAAAAGCTAACAACTATCTCCATTGGTCGAATCTTAGGTCGTGCAATCGAAGGGGTTCAAGAAAATCGCTCGTTGCATCCACTTTTTTAAGGAGATTAATAGTAGGAAATTGGGAACAGGGCTTCTATTGGGGCTCTGTTTTTTTATGAACTATTATCTGTCGACCATCAGTAGTGCAGAAAACAGGGGAGGTCGACAGAAAACTGGATTGACTGTGAGAGAATGAGTTTGAAGCTTTTAAAGTTAGTTATTAGTAGTTAGACATTCAAATTTCACCCGATTTGAAGAAGGTCGACAATAATAGGCGTTTGAGGTAAGATGGGAGTAAGGAAAAAATGAAGCGG # Right flank : TTTGTCTAACCTTTAAACATATCTACAATATTAGCCAACTCAAAAACAACAAGAATACATAAAAAGGGAGGAAACACCAATGAAAAAAGCGCTTTGCCCCATCCTATTGCTATTGATCCTACTAGCCAGTTGCTCCACGCAAGATGAAACTCTATCCCCGAATACCAAAATTCATAAAAATAGTGTCATTAGAGCTGATTATAAGATACCACAAAACCTGGCAGAACTAGAATCAGACAGCGAAGATATTGTCCAAGTAAAATTAATACGAAATAAAGAAATTGGTAAAGGAAACAACAGCTCAATAACGGAAGTAGAAATAATCAAAAACTACAAAGGCAGTTTTGAGCCCGGTGATAAAGTGGATATTTCAGAACCGTGGCTTTTAACTTCAGGAGAATACCAAGCGGTGGAAAATTACATTGCACTCGAAAAAGGTCAAGAATATATCCTGTTTTTAAGTGGTGGACATGGCACGGATAAAGTAAGCTCAATCACGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 516138-516750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009577.1 Listeria ivanovii subsp. ivanovii strain WSLC 3010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 516138 29 100.0 37 ............................. AACGACGAAATGAACAAGTTATATAAAAAACATCCAG 516204 29 100.0 36 ............................. TCAATTCCCTTGTTCGCTATAAACGGATGGAATAAA 516269 29 100.0 37 ............................. AGCTTCCTTTTTTTAAGAAATTAGCAACATTTTCAGC 516335 29 100.0 34 ............................. GGAGGAACAGCGACCGGTTTCGGCTCGGATATTA 516398 29 100.0 36 ............................. TAGCTTTGCATTTTTTCAGTGATAGAAGTCGCATAT 516463 29 100.0 35 ............................. CCACATATAAAATTACGCCTCCTAATTTTAGTAAT 516527 29 100.0 35 ............................. AACGATATTGGTACAAAAGTAAATTTATCGTTTTT 516591 29 100.0 36 ............................. AATATCATAGATGCGACTACAACGCCGTCTGACACG 516656 29 100.0 37 ............................. GTCAAATTGCTCATTGAAATAAAGCGGGTTTGTGATT 516722 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 36 GTTTTAATTACTTATTATGAAATGTAAAT # Left flank : TAGCTGCTTTACAGTATTCTTGCTTGTATCTGATGGTGACATTTCTAATCATGATTGGAACCTCTTATAAAAATTATCAGGAGTTATTAAGCATAGATGGTGAAATATTGTATCAATACTTCATAAATGGAAGCCTGCAAATATTTTTTTATAGTTTAATTATCCTATTAACTTATAGTATAACGGGAAAAATAACGTATGCTCTATATCTGAATCTAGGGTTAATTATCTTGCTGCTACCAGTAATAAATATTAATCATATTCTTCCTATTGGATTAAATGCTATGGGAATGCTTGAGGATAGAACGCCATATCAATTATCTCTACAATTACTGATAGCCATATTGATGATTACAATGATATTAATTTTAGTTAATAGAAAAAGAACGATACCGCAATAAGCATAAAAAAGGAGCGAAACAATGAGTGATACTATAATTGAATGTATTAATGTTTCAAAAGAGTTTAAACATATACAGTTGTTTACGGATGTTAATATA # Right flank : TATTTTTTGTGTCGAGCCAATTAAATTGTGTATTTGAATTTTAGCTTCTTAACATTAATAGATAAAATATTCATTGAATTTCTAAATCTCTTTGTCAAAGTAAATGTGGGAAATAAGATGGTATAGGCTAGAAGAAAACAAAGCAAAAGTTTGCGAACTAGAAATCCAGTAAGTACCTTGCAAAAGAAGTAAAGCGCATGCGGCGAAAAGACATCACCGAACTAAATGGTTATATTTACAGGTTAAGAGGTAGCAATACAATAGTAAAAATTGGCCCGAAAAATCAAAGGAGCAATCACAGACTCAGAGGACTAACGAATATAGCGATACCTTTAGAGCAGATAAAAAGCTTTAAGGGTATTTTTATCTCCAAAAACCTCTCTTTTACTGGCCCATCCCCATATTCCTAATTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAGTAACATAACTCTAAACTTATAATGAACGTAGTAAATGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //