Array 1 1-142 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMH01000078.1 Companilactobacillus paralimentarius DSM 13238 = JCM 10415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================== ========================================= ================== 1 20 100.0 41 .................... TAGTGCTGATAAGTCTCTTTCAAAAATTCAGAAGAATCATC 62 20 100.0 41 .................... CAGCGCCTATTGTGGCTGGTTTTGGTTATGCCGGAATCATC 123 20 100.0 0 .................... | ========== ====== ====== ====== ==================== ========================================= ================== 3 20 100.0 42 CCCATGTATATGGGGAGCAC # Left flank : | # Right flank : CACTTAAAAAAAGCCGTTACATAGGCATTTTCAAATTACAAGGTTGCCGTTTTTTATTAACTTCTCTGCTAAAGACAACGTAGCTTGAGCATCAGATAATGCATGATGTGGATCTAAATTCTCTATCTGATATGCCTCCAAGACAGTGTTAAACGATAGTTATCTAAAAACTCCTGAGTTGTTTTTACTATTGGCATAAGATCGTGGGTAGAGTTAGTAAATTCGGTTTTTCCAACTTTCCGCAATGCTTCCGTTAAAAACCCTTCATCAAATTCAAGATTATAACCGATGATGACTGAATCCTTAACAAAATCAGACAATGCCTCTAATCCTAATGAAAGCTCAACACCCTGTTTTTGCAACTGTTCTGAAGTGATTCCGGTAAGTTCAGTAATTTTGGATGGTACTAAATCCACACTTCGAATTAATTTTTCAAATTGCAGTAATTGTCCGTCGGGCATTATCTTGGCTGCTCCAATTGAAATAATTTCTGCTTTAGT # Questionable array : NO Score: 4.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.75, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCATGTATATGGGGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 366-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMH01000050.1 Companilactobacillus paralimentarius DSM 13238 = JCM 10415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 365 29 96.6 32 ............................T GTCAAGGTTAATATTCGCTATTTTTGTCATTT 304 29 100.0 32 ............................. ATTAGCCGAGGATACTCCTGTTAGTACGGAAG 243 29 100.0 32 ............................. TTTTGTGCTTGGATATCATCTACTTCATTATT 182 29 100.0 31 ............................. GTGTCCAGCTTGTATTTGTTTTTCATCATGG 122 29 100.0 32 ............................. TAAGTCGCAGTTACCATTCACAACGTTGTAAT 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTACTCCCCATGTATATGGGGATGATTCC # Left flank : TATTTGGTTCCTTAGGGGATAGGGATACTTTCAAAAAGTGTTCATTGATGATCAACTACGCAAGTGTGAGACGAGAGCAGCAGCAATTATACAGCCACGGTGGTCGTTTATACTTGATACAAGCACAGGCTGAAACGGTTGAGGATGCTCAAACAAAAGTTTATCAAGAACTTGAAAAAATGGATCAAACAAATATTTTTTATCGACGAGATATTGGTAAGAACTCCATTTAGTTCAAAAAGGTAGAAGTAAGATTTCGTTTGAAATATTACTTCTACCTTTTTATTTGAATCGATATCTTAGAATTTTGAGTTTTTGAAAAATTTATAGACATAGATATTTAGAGTATTTTTTATTGGTCATTGAAACTATTGAAAATAGCGTTGCATAGAACGAAAAAGAAAGTTATTCTTTAAGAAATTGGTAATCTTATTGGACAAGTTAATAAAAATAAGTGGTTTTCTAATTTTAAAATGTTGATCTAACGGTCTTTTCTTAGT # Right flank : CAAACTCGTTCAATACTTTCATCCCCTTTATAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCATGTATATGGGGATGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 30-241 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMH01000174.1 Companilactobacillus paralimentarius DSM 13238 = JCM 10415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30 29 100.0 33 ............................. GTCAAAGAAGACGTAATCAAGTTTATCAAAGAA 92 29 100.0 32 ............................. GGCAGCCATCGTCACTGTCTTGCCCGAACCGG 153 29 100.0 32 ............................. ACCAAAGAGCCACATGCACCACTGTCCTCTGA 214 28 82.8 0 ...T..........T...A..-.....T. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 95.7 33 GTGCTCCCCATATACATGGGGATGATTCT # Left flank : GTTTTGTATGCTATCACCTCCCTAAAATCG # Right flank : TCAAATAAAAAAAGATGCCTATGTCAAAACACTGAATGCTTTGATATGGGCGTCTTTTATTGTGTAATGTGTCGTTGATGGAAAATACCGAAGCCTTTAATTGCGAGACTGGAGATACCGACTGACATGACAGCTAGTAGGAAAGAAATTAAATCATTTAAGGCAAAGTTTCCTAAACAAACTAATCCATCAATAATGAATAGACTGATATATTTATCTACACCGAAGTTTTTATGAATAATCATTGGGGGAACTGTTGTCCCACCACTAGACATGTTGAGAGTATAAAGAATAGCTAAACCAATTCCAAAAATGATACTTCCTACTATAATAGAGATTACTCGATTATTAGGAATTAAATTGTAAACCGGTGTGATATATAGCAAGAGGGGAAGCATGAAACTTCCAATTGCTAATTTAATGGTGGTTTGTCGATCTAAATGTATGTAAGCCAGTACTAACATCACAATATTTATGGAAAGAACCGAGATGAATGTTGG # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATATACATGGGGATGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //