Array 1 1510-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTR01000018.1 Treponema pedis isoM1224 segment17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1509 36 97.2 30 A................................... GAGAATAGTTCAAACAACGCCACAAGTAGG 1443 36 100.0 30 .................................... AGACTGCGTGATGTTCAGGTTCATCTTAAC 1377 36 100.0 30 .................................... AAACAAGGAGATTTTATAAATGGCGGACGG 1311 36 100.0 30 .................................... TTTTTATTCAGTTATTTCTTCGTCTTTATG 1245 36 100.0 30 .................................... ATTTTTGCAAATGTATTTTCAATTCCGCCG 1179 36 100.0 30 .................................... ATATCGTCACGGCCCATGATGTCTGCATAC 1113 36 100.0 30 .................................... ATCGACGAGCTGCGACAGGCGGCGTATGCA 1047 36 100.0 30 .................................... AGAAGCGAATGAGTTATTAAGAGCAGCTAG 981 36 100.0 30 .................................... AACTCCACAAGCTAAATGTGTCTTACCGGT 915 36 100.0 30 .................................... ATTGGACTCGATAGACCATTCCGTGGGCAA 849 36 100.0 30 .................................... TCTTTATACAGCTCACGGGGCAGTCGATAC 783 36 100.0 30 .................................... ATACTTATCCAACTTAGCTTTAGGAATTAA 717 36 100.0 30 .................................... CGCGAGCAGTTGAATTCTTTTCGCCAAGCT 651 36 100.0 30 .................................... AAGATGTGATAGCAATACTAATAATTGTTA 585 36 100.0 30 .................................... CGTATAACATGATTTACTTCTATTACTACA 519 36 100.0 30 .................................... ACCTCCATTAAGGTTTGTGACCTCATTAAA 453 36 100.0 30 .................................... TAAAAAGTAAGGCGGAACAAAACGGACTTG 387 36 100.0 30 .................................... GATTATTTGAAATTTCGAAATGATAGTGTT 321 36 100.0 30 .................................... AGCAACGCCAGTTGCGGCTGAAGTAACGCC 255 36 100.0 30 .................................... ATCACCAGAAAGCTCATTAGGCAAAGCTAA 189 36 100.0 30 .................................... GGTGAAGAGAAATTTAAAACTTGGCCTTTG 123 36 100.0 30 .................................... CCAATGTTCCCTGGTATGATGTAATACCTA 57 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.9 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : GCCGTCCGCAAAAAATAATTTGCTTTAAACATTGCTTTAAAAATATCCGTTTCTACGGAAGTAAAAAATACTCTTCCCGGTAAGCGGTTATAGGGTTTAAACCCTGCAAGTTTCAATTCATTTGTCAAAACGGGTTCCGCTCCGACTGCGCATAAGGCTATAAAGTCATTCATAAGATAAGCAGTATACTAAAAAAGTGCCTCTTTGAAAATAAGCATGGCTTTAACATAAAAGAAAAAAGTTAAAATAATTATGGTAGAAGGGGTATTTTTTGAAAAATAAGAATACAGTAGAGAAGATTGGAAAGTAAAATACTCATTAACCTGAATACTTACAGCAGTATACGATATAAGTTCGGTTTAAATGAGCATTTATATGATTAGAGAGTTTGCAAGGTTTAAAGAAATATAGTTTAAACAGACCGTCAATTTAAAACTACCCAATGGACGACCTGTTTATAATGAGGTTCAAAGAATAAGTCTGGGAAGCGATTGAAGAGT # Right flank : TTGTTGACTGTTGTTTTTACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 35-399 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTR01000439.1 Treponema pedis isoM1224 segment438, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35 36 100.0 30 .................................... CATCGGCCCCGAGTTTTAAAATTGTTCCTG 101 36 100.0 30 .................................... ATAATTGATTGAAATCTTGAAATCATTTTT 167 36 100.0 30 .................................... AACTCTAAACTCGACTTATAGCGGTATGGC 233 36 100.0 30 .................................... TTGCGACATCTTCAAGCGGGCTCGGGAATC 299 36 100.0 29 .................................... AGATGCAATGCAGCAAGCTGCGGGAGCAA 364 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : TAATACTCCTTTAAGCATTTATATAATGCTTATTG # Right flank : TGTGAATGGTGTAAACCTATACCTAATATACATTTACTCGCTTTTTAACACAAAAAAACAGGCTTTTTGATGATGAATTTTTTCAAAAAGTCTGTTTTTTTAAAAAAATTCAAGTTGGGAGGGTGTTTTTTTCTTTTTTTCAGGGGTTTTTCCGATAAATGATTCTATTTCACCGAACTGTTTGTCGGTAAAACGGAGAATACTTACCTTTCCTTCACGCGGAATATGCTTTTTAATATACTTTACATGCACAGCGCAGGCCTCCGCACTTCCGCAGTGCCGGTAGTATACACTGAATTGCATCATAGAAAACCCGTCTTCTATGAGCTGCTGACGGAATTTTGAAGCTCTATGACGTTGCTCTTTGGTATTTGTCGGTAAATCAAACAGGCAGATAATCCACATAATCTTATACGCATTAAATCTTATATGCTCCATAGTTAGAATTCCGGCAACTGTAGTTTTTCCGTTTTCCCCGTAAGTATTTGAGCAAAGGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2351-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTR01000480.1 Treponema pedis isoM1224 segment479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2350 36 100.0 30 .................................... TATAAGGAGTTTAAAAATGGACCCTATTTC 2284 36 100.0 29 .................................... TTTGTAAAGCTCTTTTGGTAATCGATGTG 2219 36 100.0 30 .................................... GCCTGTAGCCAAGTCAAAAGAGCCTAAGTG 2153 36 100.0 30 .................................... TTCAGATTTATATTTATCTATCTTAGCCTT 2087 36 100.0 30 .................................... AAACATTAGATACACCTCACCCGTCTTAAT 2021 36 100.0 30 .................................... AGCTATTTTAATCACTTACAGCGGCTAGTG 1955 36 100.0 30 .................................... GCCGGTATACTTGTTGTTTCGATAATCAGA 1889 36 100.0 30 .................................... AATCTTCTTGAATTTCAGCTTGCGATTTTA 1823 36 100.0 30 .................................... ATGGATACGTTCCATAAGCTTATTGCGCTT 1757 36 100.0 30 .................................... TAGCCTCTGTAGCAATAGCCTGACCGGCAG 1691 36 100.0 30 .................................... AAATAAAGCGTGCATGAATTAGTATCTTTA 1625 36 100.0 30 .................................... GTAACTAAAGCCGATGCGTTGGATATTAGG 1559 36 100.0 30 .................................... CGGCGTGTTACTGGTATATCACCATTAGCG 1493 36 100.0 30 .................................... AGCCGTGAAGGCCACCTTTTATAAAGTCCT 1427 36 100.0 30 .................................... GCACAATTATATAACTCTTATCTTCGGGGG 1361 36 100.0 30 .................................... GGCGAGCCTTCACCGCCGGCGGCGAGGAGG 1295 36 100.0 29 .................................... ACAGATTGAATTGACCTGTACTCAAATCA 1230 36 100.0 30 .................................... TTTAATCCCGGTTATGTGCGATGAGGTCGT 1164 36 100.0 30 .................................... CTTCGCAGTTTCATCATCATACACTCCCGG 1098 36 100.0 30 .................................... CTTCGCAGTTTCATCATCATACACTCCCGG 1032 36 100.0 31 .................................... ATATCTTTAAACTCCTTTAGCCCCTATAGTA 965 36 100.0 30 .................................... AATGGCGGTACAGGCTCTCAACTTGGCGAG 899 36 100.0 30 .................................... TCAATAACCTTATGGTCTTTGATAGCTAAA 833 36 100.0 30 .................................... CAATATAGTCTCTACCTATGCCCTTTGAGA 767 36 100.0 30 .................................... CAATATAGTCTCTACCTATGCCCTTTGAGA 701 36 100.0 30 .................................... ACACCGCCTGAAGACTTTGACTTTATGTAT 635 36 100.0 30 .................................... CCGCCGAACGAATGTTTGGAATGTTTGCTT 569 36 100.0 30 .................................... GCTTGACCGGCAGGCGAGCCTTCACCTCCG 503 36 100.0 30 .................................... CCTCTTGCTTTGAGGGCTAAAGGAGTATAT 437 36 100.0 30 .................................... TCGGCATCAATCATAGTATCAACGCACTCA 371 36 100.0 30 .................................... TTATTATTTTTAAGGCCTACGAGTTGTTCA 305 36 100.0 31 .................................... ATTGCCTCTGTAGCTATTGCTTGACCAGCCG 238 36 100.0 30 .................................... AGCGTTAGCATCGCTGTGTTGACAGCGATA 172 36 100.0 30 .................................... GTAGCCACAAGCTTTCCGAAAGCTTTTTAG 106 36 100.0 30 .................................... TAGTGATGTAATCAGAATGCACAGCACGTG 40 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : TTACCAATAGTGT # Right flank : TAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1379-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTR01000485.1 Treponema pedis isoM1224 segment484, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1378 36 100.0 30 .................................... TGTTGACTGTTGTTTTTACGGAGCTTGTCA 1312 36 100.0 31 .................................... CCATAGTTTTTTTGTTATAACTTAAGTCAAA 1245 36 100.0 31 .................................... CCAACTCTATCTGATATGTATCTTGTGCCGT 1178 36 100.0 30 .................................... ACAAAAGATACAATTAGTAAGCATGTATTG 1112 36 100.0 30 .................................... GCTCCGCGTCAATCATTGAGTCAACGCACT 1046 36 100.0 30 .................................... AAAGCCGGCATTACAAGTAGTACAAATAAA 980 36 100.0 30 .................................... GTCACCAGACAACTCATTGGGCAAGGTCAA 914 36 100.0 30 .................................... CTGAAGGTATATCTAACATCGTGTATGGAG 848 36 100.0 30 .................................... ATCATCTTAATAAATACGGCTGAACAGTCG 782 36 100.0 30 .................................... GCCGGCATACTTGTTGTTTCGATAATCCGA 716 36 100.0 30 .................................... CATCATCATATATTCCAGGCGGCACAATCA 650 36 100.0 30 .................................... CGGAAGGTCGAAGATGTGTTGAGTATAGTA 584 36 100.0 30 .................................... GGGGCGAGTTGAGGGCTAAAGCCCTCAACT 518 36 100.0 30 .................................... AGCCAAGTCGAATGAGCCGAGATGCTTAAG 452 36 100.0 30 .................................... GACACGCTTGGTGGCGTATTTGATGGCCTT 386 36 100.0 30 .................................... TAAAATCATCAACAGAAATATTAATATTTG 320 36 100.0 30 .................................... GAATTATTATTTTTAAGGCCTACAAGCTGT 254 36 100.0 30 .................................... TGTATAAGTTCAAATTGCTGTTCAAAGGCG 188 36 100.0 30 .................................... GTAATTTAAGCCACCTGATTTTAATCAGTG 122 36 100.0 30 .................................... AGCGGGGCATTTGATTATGACGCCGCCATG 56 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : GTATGATGTAATACCT # Right flank : TTTCAGCAAGGCAGGTGCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [13.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 3080-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTR01000619.1 Treponema pedis isoM1224 segment618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3079 36 100.0 30 .................................... GACCATTTATTTGATGTGTCGTTATTACGT 3013 36 100.0 30 .................................... CTGAACACACGCGAATAGGTGCGGTGAGGC 2947 36 100.0 30 .................................... CTCGAAAAGCAAGAGTTAATGAAGCGAGTA 2881 36 100.0 30 .................................... AAATTGACCCTGAGGTGCAAGATTACTTGA 2815 36 100.0 29 .................................... TTCACGTGTATTTGACGATGCTCAAATTC 2750 36 100.0 30 .................................... ACATTTAGCGGCAATAAAACTCTTAAAACG 2684 36 100.0 30 .................................... GAGGCAATTCAATCTGAATACTTACCTCCC 2618 36 100.0 30 .................................... ATCTTCTTTCCGAACAAATCGGTAAGACCG 2552 36 100.0 30 .................................... GAGCATAACAGGATTGTTATTATTGACGAA 2486 36 100.0 30 .................................... TTTCAATCAATTTATTTATAGCCTTATCAA 2420 36 100.0 30 .................................... GAACTATACCGCTATTACTTCCAAGCACTA 2354 36 100.0 30 .................................... GGCTGTTAAACTGTTCAACCAATTAAACAA 2288 36 100.0 30 .................................... CATCAAAGGTGGATTGCATGGCTCGACCAT 2222 36 100.0 30 .................................... TATAATCTCATTCTATGATTGGGCGAAGAA 2156 36 100.0 30 .................................... TTTCCTGAAAAGGAAGATGAGCGAATGAAG 2090 36 100.0 30 .................................... CAGGCTCGGATATATTATATTGGCCTGTAA 2024 36 100.0 30 .................................... GCATATTCTGTTGATACTACGCCCCTCGTA 1958 36 100.0 30 .................................... ACTCGCGCGTATTTAGCGATACTCAAATAC 1892 36 100.0 30 .................................... AGTACTATAGATTATGTACATAATAATCTT 1826 36 100.0 30 .................................... CATAAGATAGCTCTTTCAGCTTATACCGGT 1760 36 100.0 30 .................................... CAATTCGTCTAGGTCTTTCTCGTTATAATG 1694 36 100.0 30 .................................... CCACAATCCAAACTGGTACCCTCCCTCGAT 1628 36 100.0 31 .................................... AGGTGAGCCCTCGCCATTAGCGGCGAGGAGA 1561 36 100.0 30 .................................... GAAAGACATCGACTGGTGAGCAGCAACTCA 1495 36 100.0 30 .................................... CTGTCTGTCAATGAGTTATTAGGCACAAGC 1429 36 100.0 30 .................................... TAATATGAAGCTTGTTGTGCGGGCGATACG 1363 36 100.0 30 .................................... AGCTGCACTATTATCAAGACGGCGTTTGCG 1297 36 100.0 30 .................................... GATGGTATTTGCGTCAAGACATAATCTGGA 1231 36 100.0 30 .................................... AGTGAGATACCTGGTATTGATGAATGGTTG 1165 36 100.0 30 .................................... CTTATTTAAAATATAATGAACGTCCTATCA 1099 36 100.0 30 .................................... GAGTTGGCCACCGAGAGTAATGACGTCACC 1033 36 100.0 30 .................................... AGTTATAGGTAATAACTTGCCTAATTGTGT 967 36 100.0 30 .................................... CGCGGGCAGAGGCGTTCTTCTCGCCGAGTT 901 36 100.0 30 .................................... AGTCAGGTTCTTCACCCACTGAGCCACAAA 835 36 100.0 30 .................................... ACTTTCTGTTTGTTGTTTCAACATAATCTA 769 36 100.0 30 .................................... CAAAAGAAGAAAAAGGGAGGGAAATCAACT 703 36 100.0 30 .................................... AACAAAAATCGCAAAAATAGAACCCGTTTG 637 36 100.0 30 .................................... AATTTCACATTCTACTGGAGAGTTGTCGTT 571 36 100.0 30 .................................... AAAAGTTTGTACTATTTCTGATATTTCTTG 505 36 100.0 30 .................................... AGAGCTGAGTCGCCCACAGTATAATCTCTA 439 36 97.2 30 .................C.................. TAAATTTGCAGGCACATTACCAATAGTGTT 373 36 100.0 30 .................................... TATAAGGAGTTTAAAAATGGACCCTATTTC 307 36 100.0 29 .................................... TTTGTAAAGCTCTTTTGGTAATCGATTTG 242 36 100.0 30 .................................... TCCAGTATTTTGCGATTCGTCCGAAACGCT 176 36 100.0 30 .................................... CTCTTTCCAAGTTTTGGAATTTGAGCATCA 110 36 100.0 30 .................................... GCGGCAAGATTTATATCAATGCTGCCGCCG 44 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 47 36 99.9 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : ATATAATCTCCTTACAACTAATATATCGTTTCCAAC # Right flank : TCAGGCTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 3348-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTR01000757.1 Treponema pedis isoM1224 segment758, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 3347 36 100.0 30 .................................... TAGTGATGTAATCAGAATGCACAGCACGTG 3281 36 97.2 30 ..........T......................... AAAGTTTTCGTAAATATTTATAATATTTCA 3215 36 100.0 30 .................................... ATAACGTCATGCTTTACTACATCAACAGTC 3149 36 100.0 30 .................................... TTCATTGCCCGATAGTCGTTTTCTATTTTG 3083 36 100.0 30 .................................... GTTTATGCGGGAAATTAAAGTCCCGAGCTT 3017 36 100.0 30 .................................... GTAACGTTCGTATACTGTTTGAACTTTTTC 2951 36 100.0 31 .................................... TCATTTTTAAAATTGGATTTCATAAAGTTTA 2884 36 100.0 30 .................................... AATCGGCTTTTGAAATCTCAGGCTGAAATA 2818 36 100.0 30 .................................... CGGGTACAACTTCGTCACACATTATGGGTA 2752 36 100.0 30 .................................... AGGCATATCTAATATTGTATATGGCGCTAA 2686 36 100.0 30 .................................... TTGCCCATAGTTTTTTTATTATAGCTCAGG 2620 36 100.0 30 .................................... CTGTCATACACAGCTTTATCTTGCTTTTTC 2554 36 100.0 30 .................................... AAACAGGGGGGACGAAGATGTTGGAAGGTG 2488 36 100.0 30 .................................... GAGCGTTATTTGTTACCTTGACTTATGATG 2422 36 100.0 30 .................................... ATCTTCTCTTGAGCTTTTAAAGGCCAAGTG 2356 36 100.0 29 .................................... TGCCTCCGTAGCTATGGCTTGACCGGCAG 2291 36 100.0 30 .................................... TTTTAGGCCTAATGGTAAGCAAGCCCATAA 2225 36 100.0 29 .................................... TTTGGCGGTGTTTTACAACCGACAAACAT 2160 36 100.0 30 .................................... CAAACATAGCAGTTCTTATATCGCTTAAAG 2094 36 100.0 30 .................................... ACTCGCGCGTGTTTGACGACACTCAAATAC 2028 36 100.0 30 .................................... GTTGCAGATAGTTTTTCAGGTAAAGATTTA 1962 36 100.0 30 .................................... TATGCGGACTTAAAGATATTCGACGATATG 1896 36 100.0 30 .................................... TCGGAGCCTGAAAAATCCAGAGGTGCGCAA 1830 36 100.0 30 .................................... TCAAGCTGGAATTCCTTGTTATAAATTGAA 1764 36 100.0 30 .................................... CTAACTATATGTCCTAATTCGTGAGCAATA 1698 36 100.0 30 .................................... TTTGCGGAACGGTTTGCCCCGCTTCGTCTG 1632 36 100.0 30 .................................... TATTAGATTGTTGGAAGAGATAGGGAATTC 1566 36 100.0 30 .................................... GATGCATTATGCCTATGTCAGGGTAGTGTC 1500 36 100.0 30 .................................... AAAAATCCAAAAAATATTGACCCTATTGTT 1434 36 100.0 30 .................................... TACCCTCAGCTAAACCAGAAGCGGCACCAG 1368 36 100.0 30 .................................... GTCCTCAAAATTCTTGTCAAGTATTCTATA 1302 36 100.0 30 .................................... CGGCTATTCAAAAAACTGCGCTTGAAACTG 1236 36 100.0 30 .................................... CGCGGGCAGAGGCATTCTTCTCACCAAGCT 1170 36 100.0 30 .................................... CCGTGTAACTCATAATACTCCTTCTCGTCT 1104 36 100.0 30 .................................... AAGGTTGATACAGCTCCGCGCTGTCTGTAA 1038 36 100.0 30 .................................... GAAAACTTCTAAGACAGAAGAGACAGACAG 972 36 100.0 29 .................................... TTTTGCTCTGAAAAAAAGATTGAATTTCA 907 36 100.0 30 .................................... AAACGTTCAAATCGAATGCTGCGACGCCTT 841 36 100.0 30 .................................... GTTTAAGTTTGGAAACCGATTATCTTTATG 775 36 100.0 30 .................................... TCTCAAAAGAAGAATACAATTTATACATTG 709 36 100.0 30 .................................... TAATAGCTCAATATCTTTTTGAGTGCATAA 643 36 100.0 30 .................................... AGAGCGTGCCGTTCCCTGTGTATGCGCTTG 577 36 100.0 30 .................................... CACCCGACACAAAAGCCCATCGGAGTGATT 511 36 100.0 30 .................................... ATAATACAATTTATTATACATTATAAATAA 445 36 100.0 30 .................................... ACCTCACACATAAGATGGTGAAGGGGTAAT 379 36 100.0 36 .................................... CTTGACAAAAAAGGGCTAAACACCTTTGAGGGTTGT 307 36 100.0 30 .................................... AAATTGATAATGAACTTATAGCCGGTATCT 241 36 100.0 30 .................................... TTTGCCTTAAACGGTTAAATCAACGTCTTA 175 36 100.0 30 .................................... ACTCCTTTAAGCATTTATATAATGCTTATT 109 36 100.0 30 .................................... CATCGGCCCCGAGTTTTAAAATTGTTCCTG 43 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 51 36 99.9 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : | # Right flank : TATAATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [10.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 14-2952 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTR01000821.1 Treponema pedis isoM1224 segment829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 .................................... AGCGGGGCATTTGATTATGACGCCGCCATG 80 36 100.0 30 .................................... TTCAGCAAGGCAGGTGCGTCTGCGACCTCA 146 36 100.0 30 .................................... TTGTCTCCAAACTTTCCTTTGCGATATTTA 212 36 100.0 30 .................................... TAGAGCGTGATTTAACTTTAAAGCAAAATG 278 36 100.0 30 .................................... CAATCCGTTTGTCTGAACATTCGTTGGTGA 344 36 100.0 30 .................................... AGATTTAGGCGAGTTGTCGGTTTGTGTAGA 410 36 100.0 30 .................................... GATGTTGCAGCCGTTACAGAGTTTAACGCT 476 36 100.0 30 .................................... CTATTATTGAAAATAAAACTCAAGTAGACT 542 36 100.0 30 .................................... CGAGAAGAATTAAGGCAGCTTAAAGAATTA 608 36 100.0 30 .................................... TTATTGTTGCTTCAGGCAATCTTTCTTCTG 674 36 100.0 30 .................................... GAAGAGGCAGTAAGAATAAAGGCACATATA 740 36 100.0 30 .................................... ATGCAAATTAACAACGCCATCTTTATAGCC 806 36 100.0 29 .................................... TGATTATGTTGAAAAGCATCGTGAGCAGC 871 36 100.0 30 .................................... ATGCAAATTAACAACGCCATCTTTATAGCC 937 36 100.0 30 .................................... ACCATCAAATACGCCACCAAGTGTATCAGT 1003 36 100.0 30 .................................... CGGCTGTAATTTAAACAGCGCCACAAGTAA 1069 36 100.0 30 .................................... CGTAATAGGCAACAACTTACCTAATTGTGT 1135 36 100.0 30 .................................... CTTCTAAGAAGCTATCTGAGAGCTTATGGT 1201 36 100.0 30 .................................... GACTATGATGAAATATCTTTTTATTTTTCA 1267 36 100.0 30 .................................... CTATCTGATTAACGTGTTCTTCCATAGTTC 1333 36 100.0 29 .................................... TCTTCACCTTAATACCCCATTCCTTGTTA 1398 36 100.0 30 .................................... TTAAGGAGTGAAATTATGTTAAACGAAATA 1464 36 100.0 30 .................................... TTTTAAATTAAACTTCCTGCCCTTCCCTAT 1530 36 100.0 30 .................................... AGAATACCGGGGGCAAGAGAGACAGCTACA 1596 36 100.0 30 .................................... TGCAGGAGATAAAAAAGCGCACTTCTGACG 1662 36 100.0 30 .................................... CAAAAATGACAGCAATGATACGGTATTCCG 1728 36 100.0 30 .................................... CGGCTTGCCGTTGTTGTCTTCATCAATTGC 1794 36 100.0 30 .................................... GATGTTATTCGATTTTTGTCCAATTCTTTG 1860 36 100.0 31 .................................... TGGCGCGGCGTGCTTTTTAGGAAGACTTATA 1927 36 100.0 30 .................................... GTTATCGCTTATGACGGTTGGGACGGCGAG 1993 36 100.0 30 .................................... CGTCAAATACGCCACCTAAAGTGTCGGTTG 2059 36 100.0 30 .................................... GAAGGTCGAAAACGTGTTGTGTATAATAAT 2125 36 100.0 30 .................................... TCCAGTATTTTGCGATTCGTCCGAAACGCT 2191 36 100.0 30 .................................... CTCTTTCCAAGTTTTGGAATTTGAGCATCA 2257 36 100.0 30 .................................... GCGGCAAGATTTATATCAATGCTGCCGACG 2323 36 100.0 30 .................................... CAGGCTCGCACAAATTGAACTGACCTGTAT 2389 36 100.0 30 .................................... GGAGCTTGCCGCAAAAGGAGCAACGGCGGG 2455 36 100.0 30 .................................... TTTACGATTTATTGCGACCTTATACCTACT 2521 36 100.0 30 .................................... TCTTGCTTATAAGCCCGATGTTGAGTATTG 2587 36 100.0 30 .................................... GGCGTTTTACAGCCAATGAAAGCCGGCATA 2653 36 100.0 30 .................................... GAAAATAAAAATGACAGAAGCAGAATATAT 2719 36 100.0 30 .................................... GCTAGGAAGCGCAATACTTCACGACATCGA 2785 36 100.0 30 .................................... ATACAACAAATACTTAAAACTGTCAAGATA 2851 36 100.0 30 .................................... TTTTTTCCATTTAAAACTCCTTGTATTTTA 2917 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 45 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : ATTTTAATCAGTGG # Right flank : AGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [16.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 36-270 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTR01000847.1 Treponema pedis isoM1224 segment858, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 36 36 100.0 30 .................................... CCAATGTTCCCTGGTATGATGTAATACCTA 102 36 100.0 30 .................................... TGTTGACTGTTGTTTTTACGGAGCTTGTCA 168 36 100.0 31 .................................... CCATAGTTTTTTTGTTATAACTTAAGTCAAA 235 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 100.0 31 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : ATAATGGTGAAGAGAAATTTAAAACTTGGCCTTTGG # Right flank : CCAACTCTATCTGATATGTATCTTGTGCCGTGTTGTGATTTGATTTCTTTTTAAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1630-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTR01000829.1 Treponema pedis isoM1224 segment839, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1629 36 100.0 30 .................................... TTGATGAAAATATGAGTGAAGAGGATTTAC 1563 36 100.0 30 .................................... AAGTACGATGAGGCAATGATTTTTGCAACG 1497 36 100.0 30 .................................... GTATTTGCTTTATAAGCTCATTATAACCCA 1431 36 100.0 30 .................................... AAAAAATCATAGCGAGTCCCGTCTTGTTTT 1365 36 100.0 30 .................................... AATGGTGGTTCTGGTTCACAACTTGGCGAG 1299 36 100.0 30 .................................... GCAAAGTACACTTTAAAATCAAAAGAAGAG 1233 36 100.0 30 .................................... CACCATTAGCATCTGGTGCGGTATAACCGG 1167 36 100.0 30 .................................... TTTCGGCGGCGTTTTGCAACCTACAAAAGC 1101 36 100.0 30 .................................... ACATTCGATGAACAGGAGAGTTTGAAGAAG 1035 36 100.0 30 .................................... GTCATTGACCTTACGTCTGTATTGTAATTT 969 36 100.0 30 .................................... AATAATAGTACACATCACACATGACGTCAT 903 36 100.0 30 .................................... TAAATAATATGAGAATGTATGAAGTACTTG 837 36 100.0 30 .................................... GGCTATAGGAATGACACGGATAGTCTTACC 771 36 100.0 30 .................................... GGTACTATTGCTGAATTAGCTAGAGATGTT 705 36 100.0 30 .................................... TTTCCTTCGAGAATTTAGAATTGTTGTTCT 639 36 100.0 30 .................................... ACGGCTTTAATGTTATTCTGATACTCGATA 573 36 100.0 30 .................................... ATATCTCATACATTTATCTGTGTTCCACCA 507 36 100.0 30 .................................... TTCGTTATCGGGAATTTCTTCGTTCGCACC 441 36 100.0 30 .................................... TTTAGGCGTTACCGAAGCGGTGCCTACGAC 375 36 100.0 30 .................................... GTAGGTTCAAATAATACAATCATTGTTTCA 309 36 100.0 30 .................................... TCTTACTGAAGATGATATTGCTAAATATGA 243 36 100.0 30 .................................... ACGACAGGAATTCAAACACGCAGGGTTGCA 177 36 100.0 30 .................................... ATTTTTTTGCCAAAAATGTCAGTCAAGCCG 111 36 100.0 30 .................................... CTCCTTACAACTAATATATCGTTTCCACCT 45 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : GTCACACATAACGTCATGTTTAACAA # Right flank : TGACCATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 38-471 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTR01000861.1 Treponema pedis isoM1224 segment872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38 36 100.0 31 .................................... AAAGATAAAAAATTATACGATGTAACTCAAA 105 36 100.0 30 .................................... AGAATTGAAAGCACCCCCGCGCCTGATGAA 171 36 100.0 31 .................................... CGATGGTTGGGCGAAGCTTCGCTAGAAAGGT 238 36 100.0 30 .................................... TTATTAAGACCGAGAGCTTCCATTTCTTTA 304 36 100.0 30 .................................... CAAGTAAATCTTAACTTGACGAAAATATGT 370 36 100.0 30 .................................... CCATAGTTTTCTTATTATAAGACAAGTCGA 436 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : ATATAATAGGCGGCACAATCATATAACTCTTACCCTCG # Right flank : ATACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //