Array 1 4165-3673 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPA01000027.1 Clostridium botulinum strain CDC KA-95B 20536_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4164 30 93.3 36 ................AT............ GTGGCAACTCTTCCTCAATATTTGTTTTTGCTTCGA 4098 30 93.3 36 ................AT............ TGTTGATTGATTTAGCGGACGAGTTGGGGGACGATA 4032 30 100.0 36 .............................. AAATCTTACCTATATCTTCTTGTTTAAGTCCTTTAT 3966 30 100.0 36 .............................. GTAATAGTTATTCCTGTAATACTAACTCTTTCCGAT 3900 30 100.0 36 .............................. AGTTTTTTCCTTATTAGAGAGTAATAAGTTTTTATA 3834 30 100.0 36 .............................. ACAAATTCAACAATATCAGTACCCACTATTGAACAT 3768 30 100.0 36 .............................. TCAAACACTTGGAGTTTTTACAGATACTATAATAAT 3702 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 98.3 36 GATTAACATTAACATGGGATGTATTTAAAT # Left flank : AGACAGTGCAGAAGAGATATTTAATAAAGTTAATGATTATATTTTAGACGGAATGCCATGCGATAGAGTAAATGAAATTATAAATAGCAATGAAAATTGTGTGAAATGGACTAGAAGAATTTGTGTACATAAAGAAATTTGGGATAAAGAAAGTGGAGATGTAGAGTACTTTTATTTCCTAAGGAGTTTATGGATTAAAGCTTTTGTAAATGAAATAAATACTGAATTTGATTATTTAGAAGACAGTAAAGGGGTAAAATCTATAAGAAGAAAATAAAGATTTTTATAAAAATATACATTTGTAATTTAAGACAAGCTTTATTATTTTACCAGGCAATTATTTTAATGAAATCCTATTAAACCTAGATAAATACAAGGATTATATATAATAGAATAGGTTGTTATCAATATTATAAAATCACTTGGTAAAATAGTAATAATATGTTACTATTACTGTATTAGAGCGATTTTATTATTTTAAGAATGGCTTATTTTCAATG # Right flank : TCATAATATACTGGTGTTGTTATGAAGAATAAGCCTAACCTAAATTTTAGATTGGGCTAAATATTACTAAATAGAATAAAACATTAATTAAAAATATTTTTATCAAACATTTCTATAAAATTACATGAAATATTTGATAGAGGTTTATTTTTAGGCCATATTAATCTTAGATATGACTCAATTGATGGTTCTATTATCTTTTTTATCTTTAAATTAACATTGGGTAAGATATTAGAAGCAGTAAGTGGTAAAATAGAAATTCCAATTCCAGCTTCAGCCCAACTTAAAGAGGTAATAATATCATCATTCTTACATATTATATGTGGTTCAAAGCCTGCCTTATTACAAGCATTTTTTATAACATCATCGTATCTTCTATTAATTATTAATGGCTTATCTTTTAATTCGTTAATGAGAATAGTGTTACTTTCTATAGAATTATAGAATTTAGATTTTGCAATTGTAACAAAATAGTCATTTAAATTATTTTCAAGGTTATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGGGATGTATTTAAAT # Alternate repeat : GATTAACATTAACATGATATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 37648-36538 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPA01000146.1 Clostridium botulinum strain CDC KA-95B 20536_147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 37647 30 90.0 34 T..........C...........G...... AATTAACCACGAAACTAGGACTAACGCCCTGCCG 37583 30 100.0 34 .............................. CTGCAGGAAATACACCTTGTCCTACCCCACTAAA 37519 30 100.0 36 .............................. GAACACATATTGGACATATAATAGTATCCATGTTTT 37453 30 100.0 36 .............................. TAAATTAACATCATTGAAAACAGAAGGAATTAAGGC 37387 30 100.0 34 .............................. CTAAAGCTGGTAGTAATGATGATATTATAGATAC 37323 30 100.0 36 .............................. AAGCCTTTGTTCTGCTCAAACAAATCATCTGGAACA 37257 30 100.0 36 .............................. AATTAATTCAATAAGGTATTTTAGACCTAAATATAT 37191 30 100.0 37 .............................. TATTTTCATCTATAGTTGCTTTTAATTCTTTGACTTC 37124 30 100.0 36 .............................. TTCTCCATTATGGAATGTTCCACCAAGACCTATTCT 37058 30 100.0 36 .............................. TCTCTCAAAATCGCAACAGAGAGAAGGAATAAATAG 36992 30 100.0 36 .............................. TATGGCTAGGAATACAACTATTGATGGCTATTATGT 36926 30 100.0 36 .............................. TATAGAAGGGAGTTGTAAAAAAATGTCATTAAAAAA 36860 30 100.0 36 .............................. AATACTTACATTGGCTAGTATGGTTCAGCCAAGTGA 36794 30 100.0 34 .............................. AAAATCCCCCTAAATAAAACTTTATAATAAAAAA 36730 30 100.0 35 .............................. GAACTTAAGAAAAACACAGATATATACTTTGATTT 36665 30 100.0 36 .............................. TAAATTTAGGTTGTGTTATTTCCTCATTTTTCTTTA 36599 30 100.0 1 .............................. C Deletion [36569] 36568 30 76.7 0 T......A...G...T.C...A.....G.. | T [36540] ========== ====== ====== ====== ============================== ===================================== ================== 18 30 98.2 34 ATTTAAATACATCTACTGTTATTATTCAAT # Left flank : CTCCCCATTTTAATGATTGACCACCTCAGTCATGTAAAGTCTATCAAATAAGAAGTTTTTCATGAGTGTACAACTAAAACCTATCTCTATATTTATATAAACAATCTAAATAGATTGAATATAGCAACTAATTTTTCTTAAAATAAAAAAATCCCTAAGAACATTAATTATTAATTTCTTAGAGATTAAATCACTCTTATTATTAATTATCACTCATATAAATATGAGTTAAAATTTATTTTTTACTTATTTAGTATATCATAATAATTAAATTCTTACAATATGATACTTACACTCCTCATAACTTACCATTATTATAATATATCTTTATATATAAAGCTAAAAACTGTTCATACTTCCGATTTGGTAATGTGTTAATAAACTACCAAATAAAAATTAAATATGAATTACTAATATAGCTTGTACTTATTAAATCTTTAAAGCACATAATACTTATTTTAGGACATATTAAAGTTATATAGTTTTAGTATTTGTAAAAA # Right flank : TTTTCTATAAACAACTTAATTACTAGCTTTACTAAATATTTTACCAAGTAAACTTAAATAATCTTTATTATGTAAATATCATTTAATAAAGATAGAATTATCAACGTATCACATAAAATTTATTTAAAATCACTTGGTAAAATAGTATTGAATTTTGAGTTTTAAGTTATATAAATACGAATATTAGTAGTTCTAAATTATTAAATTCCCTTGAAATCTATCAAATATTTCCTTATTGAATTTATATTCTGAATTTATAATTGTAGAAATCTCATCTTCTGTTAACATTAAGCAATATATTCCTGTAATACATTCATAGCAAATATCTTTACTAATTAGCATATCTTCAAATTGCTCTATACTTCCTTTAAAACTATATTTATAGCAAAAATAACTTAAATCACACATGGAATTTTTAATATCAATTTTCTTTTTAGCATAATTATTTCCCTTAAAACTATCTTTGAATTTATTCCAAATATTTTTACCTTTCATATTTA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTACTGTTATTATTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //