Array 1 53109-58958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJIVB010000127.1 Xanthomonas campestris strain DC06T4A Contig_134_247.861, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53109 28 100.0 32 ............................ AGGCCGACAAACGAAAGCGGCGACAGCGAGCC 53169 28 100.0 32 ............................ TTGACGCTGCGATCGACCATGCGGTGCAGTTT 53229 28 100.0 32 ............................ GAATTGGCCTTGAGGCCGATTTCATCGACCAG 53289 28 100.0 32 ............................ TCGCTGAACTTCCATTCAAGTTGCACGGGCTC 53349 28 100.0 32 ............................ TTGCGGCCGAGGAGAGCATTCCGGGGTGGGAG 53409 28 100.0 32 ............................ ATCAGCATGTCATTCAGGTCTGCGGCCTGCAC 53469 28 100.0 32 ............................ GCCAAGGCCGCTGCTGCCAGCTTCCGCGGCCC 53529 28 100.0 32 ............................ CAGGGTTTTTTGAATCAAAACCTGGCGCCTCG 53589 28 100.0 32 ............................ ACAGCCGACGCAAAGTTTCGGCCGATCACCAT 53649 28 100.0 32 ............................ CCCGCCGCCGTTTCCTGGCCCGCGTTCTGCAC 53709 28 100.0 32 ............................ AGCACAGCAAGCCTTACACCGTGGCCGCGATC 53769 28 100.0 32 ............................ AGGAAATGCATAGCGCTCGCGGCGCACATACC 53829 28 100.0 32 ............................ TATACGAAGAAGCCGGTGGGCTGCCTTGCAGC 53889 28 100.0 32 ............................ TACACCACGAAACAGGAATGCCCGATGCCGCA 53949 28 100.0 32 ............................ CCAGAGTGGAAGCGGATGCGCATGCCATTGGT 54009 28 100.0 32 ............................ ATCAGCCTTCTCACGCACGACGTAGGTCAACA 54069 28 100.0 32 ............................ GACACGGTAGCCGTTGTGCTGGTGGTGCTGGC 54129 28 100.0 32 ............................ GCACAGCAGTACGTGCATGCGTTCGTGACGGC 54189 28 100.0 32 ............................ ATTCGCCGGCCACCCACTGGCGCAAGTTTTCA 54249 28 100.0 32 ............................ TAGGCCGCCTCGACGATAACGGCGATGAGATT 54309 28 100.0 32 ............................ ACTGGCGAACGTGTGACGCACAGGGCCGTGCC 54369 28 100.0 32 ............................ ATCGGCCAATGCGGTTTTACATGCGTCGGCGT 54429 28 100.0 32 ............................ CGCAGCGCGACGAGCTGCCGCAGGCGTCAGGC 54489 28 100.0 32 ............................ ATGAGCAGCACGATGCCAATGGCCGCGAACAG 54549 28 100.0 32 ............................ CCAGGCGACAGAGGATGCCTGTGCGCTGGTTA 54609 28 100.0 32 ............................ GAGAAGGACGGTGGCGGCTATGCGAGGCACTC 54669 28 100.0 32 ............................ ATTCGCCGTAGCGCAGGTCCGGGCCGGCATAC 54729 28 100.0 32 ............................ TGACGTGGCAGCAACGTGCGTCATGGCGCTGA 54789 28 100.0 32 ............................ AACTTCGTCCTCGCATGGGCGGATACTTCCAT 54849 28 100.0 32 ............................ AGCAACCATGCCAGGTCTTGCCAACGTTTCAG 54909 28 100.0 32 ............................ TGGATCCGTCAGGCTTCCGGAACCCGAAAAGC 54969 28 100.0 32 ............................ AGCGCAACGCCGAACAGCTCGACCTCCTGGAA 55029 28 100.0 32 ............................ GGCGAGGGCATCGGCCGCGAGGCGCATGCCGC 55089 28 100.0 32 ............................ TGCAGCACCTCGTCGTGCGTGCGCTCCTCGAT 55149 28 100.0 32 ............................ TCCCGCCGCTGCCGGCTCTGTTGTGCCGGCAA 55209 28 100.0 32 ............................ GATCGGCTGATGTGGCCACGGCTACACGCAAC 55269 28 100.0 32 ............................ TGCGGCGCAATGCCAACGATGTAAAGCCAAGT 55329 28 100.0 32 ............................ TCATCTCATCGAAGCGGTTGCGCAGGTTGATG 55389 28 100.0 32 ............................ ATTATTGGCTGGAGTAGCTTGGGGGGATGCGA 55449 28 100.0 32 ............................ GCTGGGAGGGCGCCGAGACAGCCGAGCAGCGG 55509 28 100.0 32 ............................ GCGAAGGCGGCATCCAGCCGGTCCAGTTCATC 55569 28 100.0 32 ............................ AGCGAGGCGGCCATTGTCGTGCCCGAGGAAAC 55629 28 100.0 32 ............................ TGGCCGAGGCGGCGCGAAACCCGGACATCTGC 55689 28 100.0 32 ............................ ACCAGCTCGTCCAGAATGCGAACCGCCATAGC 55749 28 100.0 32 ............................ ACAGGCACTCCGCGACGGCGTGTCCATACCAG 55809 28 100.0 32 ............................ TGATTGACCGGAGAGAAGTCGGGCAACTTCAG 55869 28 100.0 32 ............................ TTAACCCGTCGCATGTCGGCCTGGATGAGATC 55929 28 100.0 32 ............................ AACACGTGGCTGGCGCCCATCGTTCGTGGAGC 55989 28 100.0 32 ............................ ATATAGGTCCGGGTCGATCACCTTGATGATGG 56049 28 100.0 32 ............................ TGCAGATCAATCGGATCCTCGGCCACGAGGGC 56109 28 100.0 33 ............................ AGGTCGTAACGCGTTTGCGCAGACATCCATTCC 56170 28 100.0 32 ............................ AACCCGACACGCAACCTGAGGCGGTGAGCACC 56230 28 100.0 32 ............................ AGTAGCGTGCGTGGCCGGCCGAAGTGCTCGAG 56290 28 100.0 32 ............................ AGGTCGTCCTGCAGAGCATCGCCCGCAGGGAA 56350 28 100.0 32 ............................ TAGCATGTCCAGCAGCTGCGCGTGCATGCGCT 56410 28 100.0 32 ............................ ACTGCAAAACAGGCAGCCTGACGCATCGCTGC 56470 28 96.4 32 ............A............... TTACGCGCCTTGCGCTTCTCCCGCTCGGTCTC 56530 28 100.0 32 ............................ ATGTAGGCCTTGTGCAGCGGGTTCTTTGCCTC 56590 28 100.0 32 ............................ ATGGCTCAGACCCCCAGACCAGCGTGGAACAC 56650 28 100.0 32 ............................ AGCCGCGGGAAGGCGCCCACTGGCACGAAGGG 56710 28 100.0 32 ............................ ATCCCGCTCGACGAGATGCCAGAGCCGGACGG 56770 28 100.0 32 ............................ CGGAATATCTCCGTGCGCTTATTGAGCAGTTC 56830 28 100.0 32 ............................ TGCCGCCGAACGCGCGCAGCAGCTCTATTGCG 56890 28 100.0 32 ............................ GTTGCGCCACACGGGAATCGGCGATGCGATGT 56950 28 100.0 32 ............................ GGCGACATCCTCGCGGTCATGCAGCACGCCTA 57010 28 100.0 32 ............................ ACGATTCCCGGCGCAATCTCGCCGGACTTGAT 57070 28 100.0 32 ............................ TACGCAGAATGGCTTAGCGACTTGCGTAGCGA 57130 28 100.0 32 ............................ TACCGGACTGGCGAAATGTGCATTGCGCTCGC 57190 28 100.0 32 ............................ AGCCGGTGCGTTGATGCTGATCTGAAACCTCT 57250 28 100.0 32 ............................ TTAGTGAAAACGTGCACGTACGTGCCATCGGC 57310 28 100.0 32 ............................ GACCTGACGCCGATTCCAAACCAGAAGGGCAC 57370 28 96.4 32 ..........C................. TGCTGGCGGGAGTCATGCCGAACTCGGACATC 57430 28 100.0 32 ............................ TAGCTGTGTAACTGCTGCATCGGTGAGACCTG 57490 28 100.0 32 ............................ AGGTTGCCAAGCGGGTGAGGTTCTGTGCGATC 57550 28 100.0 32 ............................ ACCGGCCCAGGTCGTTTGCCCCATGCCGGCGA 57610 28 100.0 32 ............................ TGGCGGATCTCCTCGGTGGTCTGGTCGATCGC 57670 28 100.0 32 ............................ AACGACGGGCCGGTCGAGTTCCACCTCGAGCA 57730 28 100.0 32 ............................ TCATTGCGCCAGACCGCCGCCTCATGCACCGC 57790 28 100.0 33 ............................ GGCCTCCATCATCTGCGCAACGGACTGCAGCAT 57851 28 100.0 32 ............................ TAGTCATGTTCCAAAGCGACAACCCAGAGGGG 57911 28 100.0 32 ............................ GCCTACAGCCGCGCATTGTCGGGTAGCGTCAA 57971 28 100.0 32 ............................ ACTACGGCCGCACCTTCGGTAGCGCTGTTCTC 58031 28 100.0 32 ............................ TTGGCGCAGAACACCGCCGCGGTGCAGGTAGA 58091 28 100.0 32 ............................ GCCTAAGTGCATGGCCATTGATCGCTACGATC 58151 28 100.0 32 ............................ CCGCGCCAACAGGCTGCGGGGCAGGATGGTAG 58211 28 100.0 32 ............................ GACATGATCCGCCAGAAGCTCTCCGGAGCCAT 58271 28 100.0 32 ............................ TACGCCAAGTGCTACTTGGCAGGCCTGCGCCC 58331 28 100.0 32 ............................ TAGGTCGTCGGCGACCAGGCCACCGTTGAACA 58391 28 100.0 32 ............................ GCGAAGCGGATGCGCACCGACTGGAAGGCTTG 58451 28 100.0 32 ............................ TGGCGTGGCTGTGCAAGCAGCTGTACTGGTAC 58511 28 100.0 32 ............................ AAACGCCAAGTCCGCACATAGTCACCTTCCAG 58571 28 100.0 32 ............................ CACGACCGGATTCGCGGCCCACGCTCCCACTC 58631 28 100.0 32 ............................ ATACAGCACAGAGTGCCTCCGTGCGCCTTGTC 58691 28 92.9 33 ....G.C..................... AATTGGACCAGGCACAAGCACGCATTTCTGCGC 58752 28 100.0 32 ............................ AGGAGCGCAAGGGTGTCGAGCTCACTGGCGCA 58812 28 100.0 32 ............................ AGGGCATTGAACAGGTCGCCGAACCCATCGAT 58872 28 92.9 31 ......................G...G. ATCGTTCCGCACGGGTACCGCATGCATCGCA 58931 28 82.1 0 ....G.......AC......T..T.... | ========== ====== ====== ====== ============================ ================================= ================== 98 28 99.6 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCGTTGCAGGCATTGATGGCAAGCGGGTGGCTGCAAGGCATGCACGATCACCTGACCGCATCGGACATCCTTTCGGCGCCTGCCGGCGCCCAGCACCGGCAGGTCACGCGGGTGCAGGCCAAGAGCAGCCCGTCGCGCCTGCGTCGTCGGGCCATACGCCGCCATGGGATCGACGCCGACACAGCCACCCAGCGCATCCCGGACACAGCAGCCGAACATTTGCAGCTGCCGTTCGTGGTCCTGGGTAGCCGCAGCACTGGACAAGCCTCCTTCCCATTGTTCATCCGCCACGGGTCCCTGTTGTCCGAACCAAGAGCCGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCCACCGTCCCCTGGTTCTGACCCTTTTTCCCAAGCAGGAAAGGGCCGCTTTGAAATCAATCACTTGGCAGGCACCCTGTGCGAAGGGTGCCTGCCTTTATTTCTTGGCTTTTCTTTAGATATCAATGGATTGGATGAATTCTGATCTT # Right flank : AAAGCAAAGTCCTGCCGCTCGGCGCCTCTGAAAAATTCACTGTCGTATGGACAGGAAAAATGGCGGCCATCCTCGGCCACTTGTGATCGATCTATGCATTACTGGACCACTCACTGCTGTGGAGGCTGTCCAGATAGAAGCCGCGCCTCCACCTACTGCTATCGCCAACGCCTGCCATCGACGCCTGCATCGCATCGTCGCGTGGCGGGCTTATCTGCGGATTCAGCTGCGCCGAGCGCATTCAACGCAGCCTGGCGCCGCGAACGCGGCCGATTGAAGCGTCATGGATTACAGGCGCTGCCACTCCAGCCCTTCGCCTCGCCGGTAATACACCGCCACCGCCTTACCGTAGACCGCAGGTGCATCGACCAGTCCGAAATAGCGCCCATCCAGGCTGTTGCCGCGATGATCGCCCAGCATCAGCAGCTTGCCGGGCGGTACTGTCAGCCCGGCGATGTTCGGGCCGCCGCCATTGCCGAGATTCAATGGCGCCAGAGGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //