Array 1 4057371-4057760 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034276.1 Pectobacterium versatile strain 14A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4057371 28 100.0 32 ............................ TGGCTGCAAAACTGGATCTGAACGCTGGCATC 4057431 28 100.0 32 ............................ TCCGGGCAAAAATAAGGCCCGCGATTATTAGC 4057491 28 100.0 33 ............................ CTGTAGACATCACTAATACGGTAAAGGCCATCG 4057552 28 100.0 32 ............................ AATTAGTCGTTGGGTGATAGTCGTCCCATAGA 4057612 28 100.0 32 ............................ TTCCGGCACTGAACCATCCGGAGTTACCGGAG 4057672 28 100.0 33 ............................ ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 4057733 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGTCTGGGAGAGAATGATGAGCGGATTATTGTGGAGTGATGGATTTACTGCCGTGTAGGCAGCTTAACAAGTATCAGGACTTTCACTTCACCAGACATAATCCGCGATTATTTAACCCAATCTTCCAACGTCAACCCCGGTACTCGCTCAAATTCTCTCAGATTATTGGTGACCAATATGGCCTTAGCACTGATGGCATGACCCGCGATGGCCGTATCATTCGGGCCAATAGGCGTGCCTGCTGCGGCTAGCGCGATTTTAATTTTCGTCGTAGCGTCTACTGCGGCGCTATCCCAAGGTAACACCGCATCGAGCGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATAGTCGTAGCTCATTGATTTTTAATTTTGATTATCAGCCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCAGTCGGGTTGGAATGCCTAGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4065451-4063742 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034276.1 Pectobacterium versatile strain 14A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4065450 28 100.0 32 ............................ GATAATTAAATAGGCTTTGTCAAACAGGCCAT 4065390 28 100.0 32 ............................ CCAGCGTAAAGACGGAGAGCGCTTATCGATGA 4065330 28 100.0 32 ............................ CGAAGGCAGCCTGATATCATTTACTTTGATTG 4065270 28 100.0 32 ............................ CCGCACCACTGCGGCACATGGGGATTGAGGAT 4065210 28 100.0 32 ............................ TCTGACAGCGCAGCAGAAAACGAGTGTAAAAA 4065150 28 100.0 32 ............................ TACGCAGATCAGCAAGAGAAGCGCAAGGCTGA 4065090 28 100.0 32 ............................ TGAGCAGGAACAACGGGAAGATTCATGCGCTC 4065030 28 100.0 32 ............................ ATTACATCAATCTCCTGTTATCAAATTCATCC 4064970 28 100.0 32 ............................ GAGAATGCGTACTCTGCTGCCTACGCCATTGC 4064910 28 100.0 32 ............................ AGCATGATTATTGAAAATGTTGAACCTTAAAT 4064850 28 100.0 32 ............................ TTGAAGCTCAGCCATCGCACCGCGCGACAACT 4064790 28 100.0 32 ............................ GCGAACTGACGGCGGAAGAAATCGACCTGATG 4064730 28 100.0 32 ............................ TGAAACCCGTTCTGCAATGTGTCGGGCCTGGG 4064670 28 100.0 32 ............................ CGATACGGCCAGCGTTCCCAGCTCAGCACCGC 4064610 28 100.0 32 ............................ AGCAAAAAGTCAGACGCTGCCCGCTGCGGTGC 4064550 28 100.0 32 ............................ GCGTCTGTTTGTTGGCCGCATGATTTTGGGAT 4064490 28 100.0 32 ............................ AGACCGTATCCATGCCCTCAGCGGGCACGTCC 4064430 28 100.0 32 ............................ TGAGTATTACGGACAATACCGCCGCCGCACAG 4064370 28 100.0 32 ............................ CGGAAGATGAATATAAGCAACACACGGAACTC 4064310 28 100.0 32 ............................ TCATCAGAAAATCTCAATGTTAGATCCGCGCC 4064250 28 100.0 32 ............................ GCCATCGTTAAATCTGGATTCCCACTGCTGAC 4064190 28 100.0 32 ............................ ATCGCACCGCGCAGTAGAGGGTGTGACCACAC 4064130 28 100.0 33 ............................ CTCCAGCAGCAAGGCAGGGGGCAAGGCCGGATT 4064069 28 100.0 32 ............................ CAGATCACAGACCAACAATTTAGGCGCAGATA 4064009 28 100.0 32 ............................ AGCTGGCATATCATACGGGATCGTAACTCAAG 4063949 28 100.0 32 ............................ CGTATGTTGTGGGGCAAAAAACGCATTTAGTA 4063889 28 100.0 32 ............................ TTACCGACCGACGATGCTGATAGACCGGATGT 4063829 28 100.0 32 ............................ AGACAGTAAGGGATGGTAAAAATATAACAATT 4063769 28 78.6 0 ...........C........T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGGTTCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAGCGGTGACGCCAGCGGAATAAATCGCAGGCTAACTATTTGATAAAGAAAAATATAATCGTCAAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCCATTTCACAGGTTTAATAATCAATGAGTTACGGCTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCAACG # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAAGTAGTACTGCGCCAGCGCTCACCCTCGTTAAATGACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGAGTTTATTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAACGAAATAAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGATGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCCTGGAAAACGGCAATATTTGGTTGTACCGACCCCATCTCATCGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4074027-4074773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034276.1 Pectobacterium versatile strain 14A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4074027 28 100.0 32 ............................ AAAGGGCAATCGATTCTGGGAGGCCCGTAGCA 4074087 28 100.0 32 ............................ GATGCAATTTTTCTGACATTACATCAGAGCAG 4074147 28 100.0 32 ............................ AACGTGATTCCGTGTTCATCAAACCACATATA 4074207 28 100.0 32 ............................ GTCAGTTACACCGCCAGAGGGCTGGCTGGAGT 4074267 28 100.0 32 ............................ ACTCGATACCACGATCAAAGATAACGCGATCA 4074327 28 100.0 32 ............................ GCAGCTAAAACGCCAGCCTCTGGGGTTGGAAA 4074387 28 100.0 32 ............................ AGATTACCAGCAGATTGAGGCGGATATAGAGG 4074447 28 100.0 32 ............................ AGAGAAACGCATTTCTCCCGCGCCAGCCGCGA 4074507 28 96.4 32 ...........T................ TTGATTTCGCCGCCGCTTGGCTACCGTCGAGG 4074567 28 96.4 32 .............C.............. TGTAACCAGCTTCGCTGGGCTTCCGGCGGGAT 4074627 28 96.4 32 ...........T................ AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 4074687 28 96.4 32 .............C.............. GCAATTGCTGAAATCGATGCACAAGCGGCTGT 4074747 27 82.1 0 ...........T.C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGTTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCCGTCGCAGGCCGCTTCTCTTCTTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCACCCTAATAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGTGTAAAAACTTAACG # Right flank : GCTTATCGGGATGCGTCGCTGGCGCGACACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCCAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCAGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTCAGCGCTGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //